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BioC 3.5: CHECK report for ropls on tokay2

This page was generated on 2017-10-18 14:24:59 -0400 (Wed, 18 Oct 2017).

Package 1141/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ropls 1.8.0
Etienne A. Thevenot
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/ropls
Branch: RELEASE_3_5
Last Commit: ddf1ba2
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ropls
Version: 1.8.0
Command: rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.8.0.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.8.0.tar.gz
StartedAt: 2017-10-18 02:42:40 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:45:00 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 140.5 seconds
RetCode: 0
Status:  OK  
CheckDir: ropls.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.8.0.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/ropls.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ropls/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ropls' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ropls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ropls.Rcheck/00install.out:


install for i386

* installing *source* package 'ropls' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ropls' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ropls' as ropls_1.8.0.zip
* DONE (ropls)

ropls.Rcheck/examples_i386/ropls-Ex.timings:

nameusersystemelapsed
checkW4M0.360.000.36
coef2.220.002.22
fitted1.360.031.39
fromW4M0.330.000.33
getLoadingMN0.870.081.00
getPcaVarVn0.190.010.20
getScoreMN0.970.020.99
getSubsetVi0.080.000.10
getSummaryDF0.780.020.80
getVipVn0.720.030.80
getWeightMN0.980.000.98
opls-class2.410.072.52
opls2.510.072.70
plot1.440.232.03
predict0.110.020.14
print0.870.040.93
residuals0.540.000.53
ropls-package1.810.041.99
show0.910.000.91
strF0.140.000.14
tested0.060.010.08
toW4M0.20.00.2

ropls.Rcheck/examples_x64/ropls-Ex.timings:

nameusersystemelapsed
checkW4M0.380.020.39
coef2.450.032.55
fitted1.40.01.4
fromW4M0.210.000.21
getLoadingMN0.960.031.01
getPcaVarVn0.150.050.21
getScoreMN1.10.01.1
getSubsetVi0.080.010.10
getSummaryDF0.970.000.98
getVipVn1.000.021.03
getWeightMN1.190.011.32
opls-class3.280.143.56
opls2.830.113.01
plot1.280.221.55
predict0.140.020.19
print1.140.011.16
residuals0.610.020.71
ropls-package2.400.112.67
show1.100.041.17
strF0.260.000.26
tested0.090.030.13
toW4M0.240.000.28