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BioC 3.5: BUILD BIN report for proteoQC on oaxaca

This page was generated on 2017-02-15 16:14:52 -0500 (Wed, 15 Feb 2017).

Package 982/1333HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
proteoQC 1.11.0
Bo Wen
Snapshot Date: 2017-02-14 17:15:56 -0500 (Tue, 14 Feb 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/proteoQC
Last Changed Rev: 122712 / Revision: 126756
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: proteoQC
Version: 1.11.0
Command: rm -rf proteoQC.buildbin-libdir && mkdir proteoQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh proteoQC_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R proteoQC.buildbin-libdir
StartedAt: 2017-02-15 10:47:26 -0800 (Wed, 15 Feb 2017)
EndedAt: 2017-02-15 10:47:52 -0800 (Wed, 15 Feb 2017)
EllapsedTime: 25.5 seconds
RetCode: 0
Status:  OK 
PackageFile: proteoQC_1.11.0.tgz
PackageFileSize: 4.641 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf proteoQC.buildbin-libdir && mkdir proteoQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh proteoQC_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R proteoQC.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=proteoQC.buildbin-libdir proteoQC_1.11.0.tar.gz'
>>>>>>> 

* installing *source* package ‘proteoQC’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c utilities.cpp -o utilities.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o proteoQC.so utilities.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/proteoQC.buildbin-libdir/proteoQC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (proteoQC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR proteoQC.buildbin-libdir/proteoQC/libs//proteoQC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "proteoQC.buildbin-libdir/proteoQC/libs//proteoQC.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "proteoQC.buildbin-libdir/proteoQC/libs//proteoQC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "proteoQC.buildbin-libdir/proteoQC/libs//proteoQC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "proteoQC.buildbin-libdir/proteoQC/libs//proteoQC.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "proteoQC.buildbin-libdir/proteoQC/libs//proteoQC.so"