BioC 3.5: CHECK report for multiClust on tokay2

Package: multiClust

Version: 1.6.0

Command: rm -rf multiClust.buildbin-libdir multiClust.Rcheck && mkdir multiClust.buildbin-libdir multiClust.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=multiClust.buildbin-libdir multiClust_1.6.0.tar.gz >multiClust.Rcheck\00install.out 2>&1 && cp multiClust.Rcheck\00install.out multiClust-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=multiClust.buildbin-libdir --install="check:multiClust-install.out" --force-multiarch --no-vignettes --timings multiClust_1.6.0.tar.gz

StartedAt: 2017-10-18 01:35:04 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 01:37:57 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 172.8 seconds

RetCode: 0

Status:  OK

CheckDir: multiClust.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf multiClust.buildbin-libdir multiClust.Rcheck && mkdir multiClust.buildbin-libdir multiClust.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=multiClust.buildbin-libdir multiClust_1.6.0.tar.gz >multiClust.Rcheck\00install.out 2>&1 && cp multiClust.Rcheck\00install.out multiClust-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=multiClust.buildbin-libdir --install="check:multiClust-install.out" --force-multiarch --no-vignettes --timings multiClust_1.6.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/multiClust.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'multiClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'multiClust' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'multiClust' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
cluster_analysis 6.97   0.07   12.56
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
cluster_analysis  7.79   0.03    8.03
WriteMatrixToFile 0.03   0.00    7.38
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'multiClust' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'multiClust' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'multiClust' as multiClust_1.6.0.zip
* DONE (multiClust)

name	user	system	elapsed
WriteMatrixToFile	0.03	0.00	0.05
avg_probe_exp	1.18	0.08	1.27
cluster_analysis	6.97	0.07	12.56
input_file	0.14	0.00	0.14
nor.min.max	0	0	0
number_clusters	0.14	0.00	0.14
number_probes	0.22	0.00	0.22
probe_ranking	0.61	0.00	0.61
surv_analysis	0.85	0.00	0.84

name	user	system	elapsed
WriteMatrixToFile	0.03	0.00	7.38
avg_probe_exp	1.37	0.06	1.43
cluster_analysis	7.79	0.03	8.03
input_file	0.10	0.00	0.09
nor.min.max	0.01	0.00	0.02
number_clusters	0.08	0.02	0.09
number_probes	0.14	0.01	0.16
probe_ranking	0.31	0.03	0.34
surv_analysis	0.85	0.00	0.85