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BioC 3.5: BUILD BIN report for mosaics on oaxaca

This page was generated on 2017-03-04 16:40:30 -0500 (Sat, 04 Mar 2017).

Package 817/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mosaics 2.13.0
Dongjun Chung
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mosaics
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: mosaics
Version: 2.13.0
Command: rm -rf mosaics.buildbin-libdir && mkdir mosaics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mosaics_2.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mosaics.buildbin-libdir
StartedAt: 2017-03-04 11:52:17 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:52:51 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 34.4 seconds
RetCode: 0
Status:  OK 
PackageFile: mosaics_2.13.0.tgz
PackageFileSize: 1.238 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf mosaics.buildbin-libdir && mkdir mosaics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mosaics_2.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mosaics.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mosaics.buildbin-libdir mosaics_2.13.0.tar.gz'
>>>>>>> 

* installing *source* package ‘mosaics’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c convolution_1S.cpp -o convolution_1S.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c convolution_2S.cpp -o convolution_2S.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c emHMM.cpp -o emHMM.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c stack.cpp -o stack.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c updatePiMat.cpp -o updatePiMat.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c viterbi.cpp -o viterbi.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mosaics.so convolution_1S.o convolution_2S.o emHMM.o stack.o updatePiMat.o viterbi.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/mosaics.buildbin-libdir/mosaics/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mosaics)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mosaics.buildbin-libdir/mosaics/libs//mosaics.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "mosaics.buildbin-libdir/mosaics/libs//mosaics.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "mosaics.buildbin-libdir/mosaics/libs//mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "mosaics.buildbin-libdir/mosaics/libs//mosaics.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "mosaics.buildbin-libdir/mosaics/libs//mosaics.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "mosaics.buildbin-libdir/mosaics/libs//mosaics.so"