BioC 3.5: CHECK report for flowQB on tokay2

Package: flowQB

Version: 2.4.0

Command: rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.4.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.4.0.tar.gz

StartedAt: 2017-10-17 23:49:55 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-18 00:14:07 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 1452.1 seconds

RetCode: 0

Status:  OK

CheckDir: flowQB.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.4.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/flowQB.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQB' version '2.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowQB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
fit_beads                320.37   8.25  330.29
fit_led                   14.41   0.29   27.65
qb_from_fits              12.64   0.11   12.75
calc_mean_sd_197           7.86   0.55   17.16
calc_mean_sd_capture_all   6.43   0.29    8.89
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
fit_beads                280.82  10.92  294.94
fit_led                   11.58   0.25   11.55
qb_from_fits              11.09   0.22   11.31
calc_mean_sd_197          10.14   0.61    8.73
calc_mean_sd_capture_all   5.01   0.26    5.00
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'flowQB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowQB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowQB' as flowQB_2.4.0.zip
* DONE (flowQB)

name	user	system	elapsed
calc_mean_sd_197	7.86	0.55	17.16
calc_mean_sd_background	2.12	0.11	2.29
calc_mean_sd_capture	0.39	0.02	0.58
calc_mean_sd_capture_all	6.43	0.29	8.89
calc_mean_sd_duke	2.31	0.05	2.74
find_peak	0	0	0
fit_beads	320.37	8.25	330.29
fit_led	14.41	0.29	27.65
fitted_ellipse_gate	0.65	0.11	0.76
get_results_for_dyes	1.67	0.03	1.69
peak_gate-methods	1.04	0.08	1.11
pick_parameters-methods	0.71	0.03	0.75
qb_from_fits	12.64	0.11	12.75
split_in_two-methods	0.93	0.04	0.96

name	user	system	elapsed
calc_mean_sd_197	10.14	0.61	8.73
calc_mean_sd_background	2.77	0.11	2.00
calc_mean_sd_capture	0.29	0.02	0.30
calc_mean_sd_capture_all	5.01	0.26	5.00
calc_mean_sd_duke	2.63	0.13	2.34
find_peak	0	0	0
fit_beads	280.82	10.92	294.94
fit_led	11.58	0.25	11.55
fitted_ellipse_gate	1.00	0.08	1.08
get_results_for_dyes	2.24	0.06	2.06
peak_gate-methods	0.74	0.03	0.77
pick_parameters-methods	0.64	0.14	0.78
qb_from_fits	11.09	0.22	11.31
split_in_two-methods	0.63	0.00	0.63