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BioC 3.5: BUILD BIN report for flowFP on oaxaca

This page was generated on 2017-03-04 16:38:06 -0500 (Sat, 04 Mar 2017).

Package 441/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowFP 1.33.0
Herb Holyst
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowFP
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]

Summary

Package: flowFP
Version: 1.33.0
Command: rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowFP_1.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowFP.buildbin-libdir
StartedAt: 2017-03-04 11:23:08 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:23:23 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 14.4 seconds
RetCode: 0
Status:  OK 
PackageFile: flowFP_1.33.0.tgz
PackageFileSize: 5.035 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowFP_1.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowFP.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowFP.buildbin-libdir flowFP_1.33.0.tar.gz'
>>>>>>> 

* installing *source* package ‘flowFP’ ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c flowFP.c -o flowFP.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c split_utils.c -o split_utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowFP.so flowFP.o init.o split_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/flowFP.buildbin-libdir/flowFP/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘append’ from package ‘base’ in package ‘flowFP’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowFP)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowFP.buildbin-libdir/flowFP/libs//flowFP.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"