BioC 3.5: CHECK report for consensusSeekeR on tokay2

Package: consensusSeekeR

Version: 1.4.0

Command: rm -rf consensusSeekeR.buildbin-libdir consensusSeekeR.Rcheck && mkdir consensusSeekeR.buildbin-libdir consensusSeekeR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=consensusSeekeR.buildbin-libdir consensusSeekeR_1.4.0.tar.gz >consensusSeekeR.Rcheck\00install.out 2>&1 && cp consensusSeekeR.Rcheck\00install.out consensusSeekeR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=consensusSeekeR.buildbin-libdir --install="check:consensusSeekeR-install.out" --force-multiarch --no-vignettes --timings consensusSeekeR_1.4.0.tar.gz

StartedAt: 2017-10-17 22:58:44 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 23:04:41 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 356.6 seconds

RetCode: 0

Status:  OK

CheckDir: consensusSeekeR.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf consensusSeekeR.buildbin-libdir consensusSeekeR.Rcheck && mkdir consensusSeekeR.buildbin-libdir consensusSeekeR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=consensusSeekeR.buildbin-libdir consensusSeekeR_1.4.0.tar.gz >consensusSeekeR.Rcheck\00install.out 2>&1 && cp consensusSeekeR.Rcheck\00install.out consensusSeekeR-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=consensusSeekeR.buildbin-libdir --install="check:consensusSeekeR-install.out" --force-multiarch --no-vignettes --timings consensusSeekeR_1.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/consensusSeekeR.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'consensusSeekeR/DESCRIPTION' ... OK
* this is package 'consensusSeekeR' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'consensusSeekeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'consensusSeekeR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'consensusSeekeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'consensusSeekeR' as consensusSeekeR_1.4.0.zip
* DONE (consensusSeekeR)

name	user	system	elapsed
A549_CTCF_MYJ_NarrowPeaks_partial	1.20	0.06	1.27
A549_CTCF_MYJ_Peaks_partial	0.56	0.01	0.57
A549_CTCF_MYN_NarrowPeaks_partial	0.25	0.02	0.26
A549_CTCF_MYN_Peaks_partial	0.32	0.01	0.35
A549_FOSL2_01_NarrowPeaks_partial	0.25	0.00	0.25
A549_FOSL2_01_Peaks_partial	0.30	0.02	0.31
A549_FOXA1_01_NarrowPeaks_partial	0.28	0.02	0.30
A549_FOXA1_01_Peaks_partial	0.41	0.01	0.42
A549_NR3C1_CFQ_NarrowPeaks_partial	0.23	0.02	0.25
A549_NR3C1_CFQ_Peaks_partial	0.32	0.03	0.34
A549_NR3C1_CFR_NarrowPeaks_partial	0.21	0.01	0.24
A549_NR3C1_CFR_Peaks_partial	0.24	0.02	0.25
A549_NR3C1_CFS_NarrowPeaks_partial	0.72	0.00	0.72
A549_NR3C1_CFS_Peaks_partial	0.67	0.03	0.70
NOrMAL_nucleosome_positions	0.53	0.00	0.53
NOrMAL_nucleosome_ranges	0.70	0.05	0.75
NucPosSimulator_nucleosome_positions	0.57	0.03	0.59
NucPosSimulator_nucleosome_ranges	0.53	0.03	0.58
PING_nucleosome_positions	0.33	0.05	0.38
PING_nucleosome_ranges	0.31	0.01	0.33
findConsensusPeakRegions	0.76	0.03	0.79
findConsensusPeakRegionsValidation	0.07	0.02	0.08
readNarrowPeakFile	0.22	0.00	0.22

name	user	system	elapsed
A549_CTCF_MYJ_NarrowPeaks_partial	1.83	0.05	1.88
A549_CTCF_MYJ_Peaks_partial	0.79	0.02	0.81
A549_CTCF_MYN_NarrowPeaks_partial	0.33	0.01	0.35
A549_CTCF_MYN_Peaks_partial	0.40	0.03	0.44
A549_FOSL2_01_NarrowPeaks_partial	0.24	0.02	0.25
A549_FOSL2_01_Peaks_partial	0.34	0.01	0.36
A549_FOXA1_01_NarrowPeaks_partial	0.35	0.02	0.35
A549_FOXA1_01_Peaks_partial	0.50	0.03	0.54
A549_NR3C1_CFQ_NarrowPeaks_partial	0.29	0.00	0.29
A549_NR3C1_CFQ_Peaks_partial	0.39	0.02	0.41
A549_NR3C1_CFR_NarrowPeaks_partial	0.28	0.00	0.29
A549_NR3C1_CFR_Peaks_partial	0.28	0.03	0.31
A549_NR3C1_CFS_NarrowPeaks_partial	1.50	0.01	1.51
A549_NR3C1_CFS_Peaks_partial	0.86	0.02	0.87
NOrMAL_nucleosome_positions	0.62	0.01	0.65
NOrMAL_nucleosome_ranges	0.69	0.00	0.68
NucPosSimulator_nucleosome_positions	0.62	0.02	0.64
NucPosSimulator_nucleosome_ranges	0.75	0.03	0.78
PING_nucleosome_positions	0.43	0.02	0.44
PING_nucleosome_ranges	0.43	0.03	0.47
findConsensusPeakRegions	0.88	0.01	0.89
findConsensusPeakRegionsValidation	0.05	0.02	0.06
readNarrowPeakFile	0.14	0.00	0.14