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BioC 3.5: CHECK report for cellHTS2 on oaxaca

This page was generated on 2017-03-04 16:35:20 -0500 (Sat, 04 Mar 2017).

Package 172/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cellHTS2 2.39.0
Joseph Barry
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS2
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR  OK 
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  ERROR  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK [ ERROR ] OK 

Summary

Package: cellHTS2
Version: 2.39.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings cellHTS2_2.39.0.tar.gz
StartedAt: 2017-03-04 00:09:47 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 00:14:12 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 265.2 seconds
RetCode: 1
Status:  ERROR 
CheckDir: cellHTS2.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings cellHTS2_2.39.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/cellHTS2.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.39.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  ‘RColorBrewer’ ‘Biobase’ ‘genefilter’ ‘splots’ ‘vsn’ ‘hwriter’
  ‘locfit’ ‘grid’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.9Mb
  sub-directories of 1Mb or more:
    KcViab   2.0Mb
    doc      1.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from ‘cellHTS2’ for: ‘coerce’, ‘initialize’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘RColorBrewer’ ‘genefilter’ ‘hwriter’ ‘locfit’ ‘splots’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: ‘Biobase:::.showAnnotatedDataFrame’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.onAttach: no visible global function definition for ‘addVigs2WinMenu’
Bscore: no visible global function definition for ‘medpolish’
Bscore: no visible global function definition for ‘validObject’
OPIScore : <anonymous>: no visible global function definition for
  ‘phyper’
QMexperiment : <anonymous>: no visible global function definition for
  ‘par’
adjustVariancebyBatch: no visible global function definition for ‘mad’
adjustVariancebyExperiment : <anonymous>: no visible global function
  definition for ‘mad’
adjustVariancebyPlate : <anonymous>: no visible global function
  definition for ‘mad’
barplotWithImageMap: no visible global function definition for
  ‘barplot’
barplotWithImageMap: no visible global function definition for ‘par’
barplotWithImageMap: no visible global function definition for
  ‘dev.size’
boxplotwithNA: no visible global function definition for ‘boxplot’
boxplotwithNA: no visible global function definition for ‘IQR’
boxplotwithNA: no visible global function definition for ‘axis’
boxplotwithNA: no visible global function definition for ‘abline’
boxplotwithNA: no visible global function definition for ‘box’
buildCellHTS2: no visible global function definition for ‘channelNames’
buildCellHTS2: no visible global function definition for
  ‘channelNames<-’
cellHTSlistVerification: no visible global function definition for ‘is’
cellHTSlistVerification: no visible binding for global variable ‘is’
chanCorrFun : <anonymous>: no visible global function definition for
  ‘par’
chanCorrFun : <anonymous>: no visible global function definition for
  ‘abline’
checkClass : <anonymous>: no visible global function definition for
  ‘is’
checkColumns: no visible global function definition for ‘listLen’
checkControls: no visible global function definition for ‘is’
checkMandatoryColumns: no visible global function definition for ‘slot’
checkMandatoryColumns: no visible global function definition for
  ‘varLabels’
checkPosControls: no visible global function definition for ‘is’
chtsImage: no visible global function definition for ‘new’
chtsImageStack: no visible binding for global variable ‘is’
chtsImageStack: no visible global function definition for ‘new’
chtsModule: no visible global function definition for ‘new’
chtsSetSetting: no visible global function definition for ‘modifyList’
colors4Controls: no visible global function definition for
  ‘colorRampPalette’
configurationAsScreenPlot: no visible global function definition for
  ‘is’
configurationAsScreenPlot: no visible global function definition for
  ‘brewer.pal’
configurationAsScreenPlot: no visible global function definition for
  ‘colorRampPalette’
configurationAsScreenPlot: no visible global function definition for
  ‘rainbow’
configurationAsScreenPlot: no visible global function definition for
  ‘plotScreen’
controlsplot: no visible global function definition for ‘legend’
controlsplot: no visible global function definition for ‘segments’
controlsplot: no visible global function definition for ‘points’
controlsplot: no visible global function definition for ‘axis’
controlsplot: no visible global function definition for ‘abline’
convertOldCellHTS: no visible global function definition for
  ‘assayDataNew’
convertOldCellHTS: no visible global function definition for
  ‘storageMode<-’
convertOldCellHTS: no visible global function definition for ‘new’
convertOldCellHTS: no visible global function definition for ‘pData<-’
convertOldCellHTS: no visible global function definition for
  ‘varMetadata’
convertOldCellHTS: no visible global function definition for
  ‘varMetadata<-’
convertOldCellHTS: no visible global function definition for ‘notes<-’
convertOldCellHTS: no visible global function definition for
  ‘description<-’
convertOldCellHTS: no visible global function definition for ‘fData’
convertOldCellHTS: no visible global function definition for ‘fData<-’
convertOldCellHTS: no visible global function definition for
  ‘fvarMetadata’
convertOldCellHTS: no visible global function definition for
  ‘fvarMetadata<-’
convertOldCellHTS: no visible global function definition for
  ‘assayData<-’
convertOldCellHTS: no visible global function definition for
  ‘featureNames’
convertOldCellHTS: no visible binding for global variable ‘validObject’
convertOldCellHTS: no visible global function definition for
  ‘validObject’
corrFun : <anonymous>: no visible global function definition for ‘par’
corrFun : <anonymous>: no visible global function definition for
  ‘abline’
corrFun: no visible global function definition for ‘cor’
corrFun: no visible global function definition for ‘colorRampPalette’
corrFun : <anonymous>: no visible global function definition for
  ‘layout’
corrFun : <anonymous>: no visible global function definition for
  ‘image’
corrFun : <anonymous>: no visible global function definition for ‘box’
corrFun : <anonymous>: no visible global function definition for ‘axis’
densityplot: no visible global function definition for ‘density’
densityplot: no visible global function definition for ‘legend’
envisionPlateReader: no visible global function definition for
  ‘listLen’
envisionPlateReader: no visible global function definition for
  ‘write.table’
getConfiguration: no visible global function definition for ‘listLen’
getConfiguration: no visible global function definition for
  ‘read.table’
getMeasureRepAgreement: no visible binding for global variable ‘sd’
getMeasureRepAgreement: no visible global function definition for
  ‘combn’
getMeasureRepAgreement: no visible global function definition for ‘cor’
getPlist: no visible global function definition for ‘read.table’
getScreenlog: no visible global function definition for ‘read.table’
getTopTable: no visible binding for global variable ‘median’
getTopTable : <anonymous>: no visible global function definition for
  ‘median’
getTopTable: no visible global function definition for ‘fData’
getZfactor: no visible binding for global variable ‘median’
getZfactor: no visible binding for global variable ‘mad’
getZfactor: no visible binding for global variable ‘sd’
gseaModule: no visible global function definition for ‘new’
gseaModule: no visible global function definition for ‘validObject’
guid: no visible global function definition for ‘runif’
histFun : histfun: no visible global function definition for ‘par’
histFun : histfun: no visible global function definition for ‘hist’
histFun : histfun: no visible global function definition for ‘gray’
histFun : histfun: no visible global function definition for ‘rug’
histFun : densfun: no visible global function definition for ‘par’
histFun : densfun: no visible global function definition for ‘density’
histFun : densfun: no visible global function definition for ‘axis’
histFun : densfun: no visible global function definition for ‘abline’
histFun : densfun: no visible global function definition for ‘points’
imageScreen: no visible global function definition for ‘brewer.pal’
imageScreen: no visible global function definition for ‘fData’
imageScreen: no visible global function definition for
  ‘colorRampPalette’
imageScreen: no visible global function definition for ‘par’
imageScreen: no visible global function definition for ‘image’
imageScreen: no visible global function definition for ‘text’
isUpToDate: no visible global function definition for ‘getObjectSlots’
isUpToDate: no visible global function definition for ‘slotNames’
maFun : <anonymous>: no visible global function definition for ‘par’
maFun : <anonymous>: no visible global function definition for ‘abline’
makePlot: no visible global function definition for ‘pdf’
makePlot: no visible global function definition for ‘dev.off’
makePlot: no visible global function definition for ‘png’
normalizePlates: no visible global function definition for ‘is’
normalizePlates: no visible global function definition for ‘assayData’
normalizePlates: no visible global function definition for
  ‘validObject’
parseGlossaryXML: no visible global function definition for ‘tail’
perCatPage: no visible global function definition for ‘hwrite’
perPlateScaling: no visible binding for global variable ‘median’
plotSpatialEffects: no visible global function definition for ‘is’
plotSpatialEffects: no visible global function definition for
  ‘brewer.pal’
readHTAnalystData: no visible global function definition for ‘listLen’
readHTAnalystData: no visible global function definition for
  ‘assayDataNew’
readHTAnalystData: no visible global function definition for
  ‘storageMode<-’
readHTAnalystData: no visible global function definition for ‘new’
readHTAnalystData: no visible global function definition for ‘pData<-’
readHTAnalystData: no visible global function definition for
  ‘varMetadata’
readHTAnalystData: no visible global function definition for
  ‘varMetadata<-’
readHTAnalystOneReplicate: no visible global function definition for
  ‘listLen’
readPlateList: no visible global function definition for ‘is’
readPlateList: no visible binding for global variable ‘assayDataNew’
readPlateList: no visible global function definition for ‘new’
rsa: no visible global function definition for ‘is’
rsa: no visible global function definition for ‘channelNames’
saveHtmlGlossary: no visible global function definition for ‘hwrite’
scoreReplicates: no visible global function definition for
  ‘validObject’
scoreReplicatesByNPI: no visible binding for global variable ‘channel’
scoreReplicatesByzscore : <anonymous>: no visible global function
  definition for ‘median’
scoreReplicatesByzscore : <anonymous>: no visible global function
  definition for ‘mad’
scores2calls: no visible global function definition for ‘assayData<-’
scores2calls: no visible global function definition for ‘assayDataNew’
scores2calls: no visible global function definition for ‘featureNames’
sdFun : statWithNA: no visible binding for global variable ‘sd’
spatialNormalization: no visible global function definition for
  ‘locfit’
spatialNormalization: no visible binding for global variable
  ‘locfit.robust’
spatialNormalization: no visible global function definition for
  ‘predict’
spatialNormalization: no visible global function definition for ‘new’
spatialNormalization: no visible global function definition for
  ‘validObject’
summarizeChannels: no visible global function definition for
  ‘channelNames’
summarizeChannels: no visible global function definition for
  ‘assayDataElementNames’
summarizeChannels: no visible global function definition for
  ‘assayDataElement<-’
summarizeChannels: no visible global function definition for
  ‘channelNames<-’
summarizeChannels: no visible global function definition for
  ‘validObject’
summarizeReplicates: no visible global function definition for
  ‘rowMedians’
summarizeReplicates: no visible binding for global variable ‘median’
summarizeReplicates: no visible global function definition for
  ‘featureNames’
summarizeReplicates: no visible global function definition for
  ‘channelNames’
summarizeReplicates : <anonymous>: no visible global function
  definition for ‘featureNames’
summarizeReplicates: no visible global function definition for
  ‘assayData<-’
summarizeReplicates: no visible binding for global variable
  ‘assayDataNew’
summarizeReplicates: no visible global function definition for
  ‘validObject’
tableOutput: no visible global function definition for ‘read.table’
tableOutputWithHeaderRows: no visible global function definition for
  ‘read.table’
updateCellHTS: no visible global function definition for
  ‘getObjectSlots’
updateCellHTS: no visible global function definition for ‘slotNames’
updateCellHTS: no visible global function definition for ‘new’
updateCellHTS: no visible global function definition for ‘slot<-’
validityCellHTS: no visible global function definition for ‘is’
validityCellHTS: no visible global function definition for ‘assayData’
validityCellHTS: no visible global function definition for
  ‘assayDataElementNames’
write.tabdel: no visible global function definition for ‘write.table’
writeHtml.gseaModule: no visible global function definition for
  ‘hwrite’
writeHtml.gseaModule: no visible global function definition for
  ‘write.table’
writeHtml.mainpage: no visible global function definition for
  ‘package.version’
writeHtml.plateConf: no visible global function definition for ‘hwrite’
writeHtml.plateList: no visible global function definition for
  ‘channelNames’
writeHtml.screenResults: no visible global function definition for
  ‘hwrite’
writeHtml.screenSummary : <anonymous>: no visible global function
  definition for ‘par’
writeHtml.screenSummary : <anonymous>: no visible global function
  definition for ‘qqnorm’
writeHtml.screenSummary : <anonymous>: no visible global function
  definition for ‘qqline’
writeHtml.screenSummary : <anonymous>: no visible global function
  definition for ‘density’
writeHtml.screenSummary : <anonymous>: no visible global function
  definition for ‘points’
writeImgRef: no visible global function definition for ‘hwrite’
writeImgRef: no visible global function definition for ‘hwriteImage’
writeQCTable: no visible global function definition for ‘hwrite’
writeReport: no visible global function definition for ‘fData’
Data,cellHTS: no visible global function definition for ‘channelNames’
Data,cellHTS: no visible global function definition for ‘featureNames’
Data,cellHTS: no visible global function definition for ‘sampleNames’
Data,cellHTS : <anonymous>: no visible global function definition for
  ‘assayDataElement’
Data<-,cellHTS-array: no visible global function definition for
  ‘channelNames’
Data<-,cellHTS-array: no visible global function definition for
  ‘featureNames’
Data<-,cellHTS-array: no visible global function definition for
  ‘sampleNames’
Data<-,cellHTS-array: no visible global function definition for
  ‘assayDataElement<-’
Data<-,cellHTS-array: no visible global function definition for
  ‘phenoData’
Data<-,cellHTS-array: no visible global function definition for
  ‘sampleNames<-’
Data<-,cellHTS-array: no visible global function definition for
  ‘phenoData<-’
Data<-,cellHTS-array: no visible global function definition for
  ‘featureNames<-’
Data<-,cellHTS-array: no visible global function definition for
  ‘validObject’
ROC,cellHTS: no visible global function definition for ‘is’
ROC,cellHTS: no visible global function definition for ‘quantile’
ROC,cellHTS: no visible global function definition for ‘new’
annotate,cellHTS: no visible global function definition for
  ‘read.table’
annotate,cellHTS: no visible global function definition for ‘fData’
annotate,cellHTS: no visible global function definition for ‘fData<-’
annotate,cellHTS: no visible global function definition for
  ‘fvarMetadata’
annotate,cellHTS: no visible global function definition for
  ‘fvarMetadata<-’
annotate,cellHTS: no visible global function definition for
  ‘validObject’
batch,cellHTS: no visible global function definition for ‘slot’
batch<-,cellHTS-data.frame: no visible global function definition for
  ‘slot’
batch<-,cellHTS-data.frame: no visible global function definition for
  ‘slot<-’
batch<-,cellHTS-data.frame: no visible global function definition for
  ‘validObject’
coerce,chtsImage-data.frame: no visible global function definition for
  ‘slotNames’
coerce,chtsImage-data.frame : <anonymous>: no visible global function
  definition for ‘slot’
compare2cellHTS,cellHTS-cellHTS: no visible global function definition
  for ‘experimentData’
configure,cellHTS: no visible global function definition for
  ‘channelNames’
configure,cellHTS: no visible global function definition for ‘notes<-’
configure,cellHTS: no visible global function definition for ‘fData’
configure,cellHTS: no visible global function definition for ‘fData<-’
configure,cellHTS: no visible global function definition for
  ‘description<-’
configure,cellHTS: no visible global function definition for
  ‘validObject’
geneAnno,cellHTS: no visible global function definition for ‘fData’
initialize,cellHTS: no visible global function definition for
  ‘slotNames’
initialize,cellHTS: no visible binding for global variable
  ‘assayDataNew’
initialize,cellHTS: no visible global function definition for
  ‘annotatedDataFrameFrom’
initialize,cellHTS: no visible global function definition for ‘pData<-’
initialize,cellHTS: no visible global function definition for
  ‘varMetadata<-’
initialize,cellHTS: no visible global function definition for
  ‘varMetadata’
initialize,cellHTS: no visible global function definition for
  ‘assayDataElementNames’
initialize,cellHTS: no visible global function definition for
  ‘storageMode’
initialize,cellHTS : <anonymous>: no visible global function definition
  for ‘sampleNames’
initialize,cellHTS: no visible global function definition for
  ‘sampleNames<-’
initialize,cellHTS: no visible global function definition for
  ‘sampleNames’
initialize,cellHTS: no visible binding for global variable
  ‘callNextMethod’
meanSdPlot,cellHTS: no visible global function definition for ‘par’
name,cellHTS: no visible global function definition for ‘pData’
name<-,cellHTS-character: no visible global function definition for
  ‘pData’
name<-,cellHTS-character: no visible global function definition for
  ‘pData<-’
name<-,cellHTS-character: no visible global function definition for
  ‘validObject’
plate,cellHTS: no visible global function definition for ‘fData’
plateEffects,cellHTS: no visible global function definition for ‘slot’
plot,ROC-missing: no visible global function definition for ‘mtext’
show,cellHTS: no visible global function definition for ‘storageMode’
show,cellHTS: no visible global function definition for
  ‘assayDataElementNames’
show,cellHTS: no visible global function definition for ‘phenoData’
show,cellHTS: no visible global function definition for ‘featureData’
show,cellHTS: no visible global function definition for ‘pubMedIds’
show,cellHTS: no visible global function definition for ‘annotation’
well,cellHTS: no visible global function definition for ‘fData’
wellAnno,cellHTS: no visible global function definition for ‘fData’
writeHtml,chtsImage: no visible global function definition for ‘as’
writeHtml,chtsModule: no visible global function definition for ‘is’
writeTab,cellHTS: no visible global function definition for
  ‘write.table’
Undefined global functions or variables:
  IQR abline addVigs2WinMenu annotatedDataFrameFrom annotation as
  assayData assayData<- assayDataElement assayDataElement<-
  assayDataElementNames assayDataNew axis barplot box boxplot
  brewer.pal callNextMethod channel channelNames channelNames<-
  colorRampPalette combn cor density description<- dev.off dev.size
  experimentData fData fData<- featureData featureNames featureNames<-
  fvarMetadata fvarMetadata<- getObjectSlots gray hist hwrite
  hwriteImage image is layout legend listLen locfit locfit.robust mad
  median medpolish modifyList mtext new notes<- pData pData<-
  package.version par pdf phenoData phenoData<- phyper plotScreen png
  points predict pubMedIds qqline qqnorm quantile rainbow read.table
  rowMedians rug runif sampleNames sampleNames<- sd segments slot
  slot<- slotNames storageMode storageMode<- tail text validObject
  varLabels varMetadata varMetadata<- write.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.off", "dev.size",
             "gray", "pdf", "png", "rainbow")
  importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
             "hist", "image", "layout", "legend", "mtext", "par",
             "points", "rug", "segments", "text")
  importFrom("methods", "as", "callNextMethod", "is", "new", "slot",
             "slot<-", "slotNames", "validObject")
  importFrom("stats", "IQR", "cor", "density", "mad", "median",
             "medpolish", "phyper", "predict", "qqline", "qqnorm",
             "quantile", "runif", "sd")
  importFrom("utils", "combn", "modifyList", "read.table", "tail",
             "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package ‘cellHTS’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘cellHTS2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spatialNormalization
> ### Title: Spatial normalization
> ### Aliases: spatialNormalization
> ### Keywords: manip
> 
> ### ** Examples
> 
>     data(KcViabSmall)
>     x <- KcViabSmall
>     xs <- spatialNormalization(x, save.model = TRUE, h=3)
> 
>     ## Calling spatialNormalization function from "normalizePlates":
>     xopt <- normalizePlates(x, varianceAdjust="none", save.model = TRUE)
>     all(xs@rowcol.effects == xopt@rowcol.effects, na.rm=TRUE)
Error in xs@rowcol.effects == xopt@rowcol.effects : 
  non-conformable arrays
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  ‘GO.db’ ‘KEGG.db’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 6 NOTEs
See
  ‘/Users/biocbuild/bbs-3.5-bioc/meat/cellHTS2.Rcheck/00check.log’
for details.

cellHTS2.Rcheck/00install.out:

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.8270.0322.860
ROC-class0.2020.0060.209
ROC1.1380.0071.158
annotate0.9460.0040.951
bdgpbiomart0.1550.0060.161
buildCellHTS20.5270.0030.530
cellHTS-class1.4970.0291.526
configurationAsScreenPlot2.6670.0182.686
configure0.8420.0220.864
convertOldCellHTS0.5960.0070.603
convertWellCoordinates0.0000.0000.001
data-KcViab0.1710.0050.176
data-KcViabSmall0.0140.0060.019
data-dualCh0.0140.0050.020
data-oldKcViabSmall0.0130.0060.019
getDynamicRange0.7680.0080.777
getEnVisionRawData0.1080.0020.111
getMeasureRepAgreement0.6630.0090.673
getTopTable1.3820.0111.393
getZfactor0.4500.0070.457
imageScreen1.1460.0111.232
normalizePlates1.3580.0081.367
oneRowPerId0.0040.0000.005
plotSpatialEffects2.2610.0142.278
readHTAnalystData0.8910.0040.894
readPlateList0.5400.0040.543
rsa1.1270.0071.154
scoreReplicates1.0170.0071.025
scores2calls1.1610.0121.174
setSettings0.0070.0020.010