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BioC 3.5: INSTALL report for Starr on malbec2

This page was generated on 2017-10-18 14:13:32 -0400 (Wed, 18 Oct 2017).

Package 1277/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Starr 1.32.0
Benedikt Zacher
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/Starr
Branch: RELEASE_3_5
Last Commit: f644a83
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Starr
Version: 1.32.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL Starr
StartedAt: 2017-10-17 18:03:20 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:03:36 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 15.6 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL Starr
###
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘Starr’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1   -I/usr/local/include   -fpic  -g -O2  -Wall -c ahocorasick.c -o ahocorasick.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1   -I/usr/local/include   -fpic  -g -O2  -Wall -c collect.c -o collect.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1   -I/usr/local/include   -fpic  -g -O2  -Wall -c rm_small_peak.c -o rm_small_peak.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1   -I/usr/local/include   -fpic  -g -O2  -Wall -c sort_by_genomic.c -o sort_by_genomic.o
gcc -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/Starr/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Starr)