BioC 3.5: INSTALL report for RBGL on tokay2

Package: RBGL

Version: 1.52.0

Command: rm -rf RBGL.buildbin-libdir && mkdir RBGL.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/RBGL_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=RBGL.buildbin-libdir --merge-multiarch RBGL_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL RBGL_1.52.0.zip && rm RBGL_1.52.0.tar.gz RBGL_1.52.0.zip

StartedAt: 2017-10-17 18:11:44 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 18:20:31 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 526.6 seconds

RetCode: 0

Status:  OK

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### Running command:
###
###   rm -rf RBGL.buildbin-libdir && mkdir RBGL.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/RBGL_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=RBGL.buildbin-libdir --merge-multiarch RBGL_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL RBGL_1.52.0.zip  && rm RBGL_1.52.0.tar.gz RBGL_1.52.0.zip
###
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install for i386

* installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c bbc.cpp -o bbc.o
In file included from bbc.cpp:3:0:
rbgl_trimmed_boost_1_61_0/boost/graph/bc_clustering.hpp: In function 'void boost::betweenness_centrality_clustering(MutableGraph&, Done, EdgeCentralityMap, VertexIndexMap)':
rbgl_trimmed_boost_1_61_0/boost/graph/bc_clustering.hpp:118:5: warning: typedef 'vertices_size_type' locally defined but not used [-Wunused-local-typedefs]
     vertices_size_type;
     ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c cliques.cpp -o cliques.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c clusteringCoef.cpp -o clusteringCoef.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c dominatorTree.cpp -o dominatorTree.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from edmonds_optimum_branching.hpp:93:0,
                 from edmonds_optimum_branching.cpp:3:
edmonds_optimum_branching_impl.hpp: In function 'void edmonds_optimum_branching(TEdgeListGraph&, TVertexIndexMap, TWeightMap, TInputIterator, TInputIterator, TOutputIterator)':
edmonds_optimum_branching_impl.hpp:522:71: warning: typedef 'EdgeIter' locally defined but not used [-Wunused-local-typedefs]
     typedef typename graph_traits<TEdgeListGraph>::edge_iterator      EdgeIter;
                                                                       ^
edmonds_optimum_branching_impl.hpp:523:71: warning: typedef 'weight_t' locally defined but not used [-Wunused-local-typedefs]
     typedef typename property_traits<TWeightMap>::value_type          weight_t;
                                                                       ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c hcs.cpp -o hcs.o
In file included from mincut.hpp:4:0,
                 from hcs.cpp:2:
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<unsigned int> >; typename boost::graph_traits<G>::edges_size_type = unsigned int]':
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp:32:42: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
       typename Traits::vertex_descriptor p;
                                          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c incrConnComp.cpp -o incrConnComp.o
In file included from incrConnComp.cpp:2:0:
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXP, SEXP, SEXP, E_IC_METHOD)':
incrConnComp.cpp:74:32: warning: unused variable 'child_index' [-Wunused-variable]
      BOOST_FOREACH(VertexIndex child_index, components[current_index]) {
                                ^
rbgl_trimmed_boost_1_61_0/boost/foreach.hpp:1107:14: note: in definition of macro 'BOOST_FOREACH'
         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
              ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c interfaces.cpp -o interfaces.o
interfaces.cpp: In function 'SEXPREC* BGL_tsort_D(SEXP, SEXP, SEXP)':
interfaces.cpp:57:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:61:62: warning: typedef 'Color' locally defined but not used [-Wunused-local-typedefs]
         typedef property_map<Graph_dd, vertex_color_t>::type Color;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_bfs_D(SEXP, SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:98:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:99:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_dfs_D(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:142:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:143:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_connected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:198:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:199:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_strong_components_D(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:225:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:226:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:252:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:253:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_articulation_points_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:295:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp: In function 'SEXPREC* BGL_edge_connectivity_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:320:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_sequential_vertex_coloring(SEXP, SEXP, SEXP)':
interfaces.cpp:360:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:361:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
In file included from interfaces.cpp:7:0:
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >; typename boost::graph_traits<G>::degree_size_type = unsigned int]':
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp:32:42: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
       typename Traits::vertex_descriptor p;
                                          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c minST.cpp -o minST.o
minST.cpp: In function 'SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)':
minST.cpp:14:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
minST.cpp: In function 'SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)':
minST.cpp:48:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
minST.cpp: In function 'SEXPREC* BGL_PRIM_U(SEXP, SEXP, SEXP, SEXP)':
minST.cpp:81:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from minST.cpp:2:0:
rbgl_trimmed_boost_1_61_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)& ei +24)' was declared here
       typename graph_traits<Graph>::edge_iterator ei, eiend;
                                                   ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:41:0,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/edge.hpp:25:34: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
         : m_source(s), m_target(d) { }
                                  ^
In file included from minST.cpp:2:0:
rbgl_trimmed_boost_1_61_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
       typename graph_traits<Graph>::edge_iterator ei, eiend;
                                                   ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
mincut.cpp:99:19: note: '*((void*)& ei +24)' was declared here
     edge_iterator ei, e_end;
                   ^
mincut.cpp:103:54: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
             INTEGER(eList)[i++] = source(*ei, flow_g);
                                                      ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246:0,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:152:62: warning: '*((void*)(& ei)+16).__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > > > > >::_M_current' may be used uninitialized in this function [-Wmaybe-uninitialized]
                               &(*this->base()).get_property());
                                                              ^
mincut.cpp:99:19: note: '*((void*)(& ei)+16).__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > > > > >::_M_current' was declared here
     edge_iterator ei, e_end;
                   ^
In file included from mincut.hpp:4:0,
                 from mincut.cpp:2:
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<unsigned int> >; typename boost::graph_traits<G>::edges_size_type = unsigned int]':
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp:32:42: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
       typename Traits::vertex_descriptor p;
                                          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ordering.cpp -o ordering.o
ordering.cpp: In function 'SEXPREC* BGL_min_degree_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:131:53: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
   typedef graph_traits<Graph_dd>::vertex_descriptor Vertex;
                                                     ^
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:180:48: warning: variable 'id' set but not used [-Wunused-but-set-variable]
   property_map<Graph_dd, vertex_index_t>::type id = get(vertex_index, g);
                                                ^
ordering.cpp:174:53: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
   typedef graph_traits<Graph_dd>::vertex_descriptor Vertex;
                                                     ^
ordering.cpp: In function 'SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:230:47: warning: typedef 'Pair' locally defined but not used [-Wunused-local-typedefs]
   typedef std::pair<std::size_t, std::size_t> Pair;
                                               ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c planar.cpp -o planar.o
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)':
planar.cpp:161:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
            for ( int i = 0; i < v_vis.f_vis.size(); i++ )
                               ^
planar.cpp:165:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for ( int j = 0; j < v_vis.f_vis[i].size(); j++ )
                                    ^
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)':
planar.cpp:256:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for ( int i = 0; i < ordering.size(); i++ )
                        ^
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)':
planar.cpp:369:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for ( int i = 0, j = 0; i < num_vertices(g); i++ )
                            ^
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)':
planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable]
  int i, j = 0;
      ^
In file included from planar.cpp:5:0:
rbgl_trimmed_boost_1_61_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int> >; OutputIterator = std::back_insert_iterator<std::vector<unsigned int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int>]':
rbgl_trimmed_boost_1_61_0/boost/graph/planar_canonical_ordering.hpp:152:22: warning: 'second_vertex' may be used uninitialized in this function [-Wmaybe-uninitialized]
                      !(first_vertex == x && second_vertex == u)
                      ^
In file included from planar.cpp:6:0:
rbgl_trimmed_boost_1_61_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int> >; ForwardIterator = __gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >; GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<coord_t*, std::vector<coord_t> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int>]':
rbgl_trimmed_boost_1_61_0/boost/graph/chrobak_payne_drawing.hpp:217:22: warning: 'next_to_rightmost' may be used uninitialized in this function [-Wmaybe-uninitialized]
             vertex_t next_to_rightmost;
                      ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/boyer_myrvold_planar_test.hpp:12:0,
                 from planar.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >; EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, int&, unsigned int, boost::property<boost::edge_index_t, int>, boost::edge_index_t>; Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int>; StoreOldHandlesPolicy = boost::graph::detail::store_old_handles; StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237:16: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       vertex_t z; 
                ^
rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1437:11: warning: 'bicomp_root' may be used uninitialized in this function [-Wmaybe-uninitialized]
           z = kuratowski_walkup(v,
           ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/depth_first_search.hpp:21:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:19,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/boyer_myrvold_planar_test.hpp:12,
                 from planar.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/graph/named_function_params.hpp: In static member function 'static bool boost::maximum_cardinality_matching_verifier<Graph, MateMap, VertexIndexMap>::verify_matching(const Graph&, MateMap, VertexIndexMap) [with Graph = R_adjacency_list<boost::undirectedS, int>; MateMap = unsigned int*; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>]':
rbgl_trimmed_boost_1_61_0/boost/graph/named_function_params.hpp:124:64: warning: '*((void*)& occ +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
     bgl_named_params(T v, const Base& b) : m_value(v), m_base(b) { }
                                                                ^
In file included from planar.cpp:11:0:
rbgl_trimmed_boost_1_61_0/boost/graph/max_cardinality_matching.hpp:820:48: note: '*((void*)& occ +8)' was declared here
       detail::odd_components_counter<v_size_t> occ(num_odd_components);
                                                ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c shortestPath.cpp -o shortestPath.o
shortestPath.cpp: In function 'SEXPREC* BGL_dijkstra_shortest_paths_D(SEXP, SEXP, SEXP, SEXP, SEXP)':
shortestPath.cpp:17:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
shortestPath.cpp: In function 'SEXPREC* BGL_dag_shortest_paths(SEXP, SEXP, SEXP, SEXP, SEXP)':
shortestPath.cpp:136:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
shortestPath.cpp: In function 'SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)':
shortestPath.cpp:177:81: warning: typedef 'Graph' locally defined but not used [-Wunused-local-typedefs]
         property< edge_weight_t, double, property< edge_weight2_t, double > > > Graph;
                                                                                 ^
shortestPath.cpp:180:39: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef std::pair < int, int >Edge;
                                       ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& i +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from shortestPath.cpp:4:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)& i +24)' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property> >; Size = int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; PredecessorMap = unsigned int*; DistanceMap = double*; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& i +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from shortestPath.cpp:4:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)& i +24)' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from RBGL.hpp:16:0,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/property_map/property_map.hpp:127:65: warning: '*((void*)(& i)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
   inline const T& get(const T* pa, std::ptrdiff_t k) { return pa[k]; }
                                                                 ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from shortestPath.cpp:4:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)(& i)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::floyd_warshall_all_pairs_shortest_paths(const VertexAndEdgeListGraph&, DistanceMatrix&, const WeightMap&, const BinaryPredicate&, const BinaryFunction&, const Infinity&, const Zero&) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; Zero = double]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& first +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from shortestPath.cpp:7:0:
rbgl_trimmed_boost_1_61_0/boost/graph/floyd_warshall_shortest.hpp:111:66: note: '*((void*)& first +24)' was declared here
     typename graph_traits<VertexAndEdgeListGraph>::edge_iterator first, last;
                                                                  ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_bellman_ford_shortest_paths(SEXP, SEXP, SEXP, SEXP, SEXP)':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
shortestPath.cpp:101:50: note: '*((void*)& ei +24)' was declared here
         graph_traits< EdgeGraph >::edge_iterator ei, ei_end;
                                                  ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& e +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)& e +24)' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/shared_array.hpp:17:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/detail/d_ary_heap.hpp:20,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/named_function_params.hpp:24,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/dijkstra_shortest_paths.hpp:20,
                 from shortestPath.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/smart_ptr/shared_array.hpp:200:18: warning: '*((void*)(& e)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
         return px[i];
                  ^
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)(& e)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& e +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:84:39: note: '*((void*)& e +24)' was declared here
       typename Traits1::edge_iterator e, e_end;
                                       ^
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:88:70: warning: '*((void*)(& e)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
                                      get(id1, target(*e, g1)) + 1, g2);
                                                                      ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c sna.cpp -o sna.o
sna.cpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
sna.cpp:161:9: warning: variable 'res_cap' set but not used [-Wunused-but-set-variable]
         res_cap = get(edge_residual_capacity, flow_g);
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>; Size = unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& i +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from sna.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)& i +24)' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& e +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from sna.cpp:3:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)& e +24)' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/property_map/shared_array_property_map.hpp:13:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:27,
                 from sna.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/smart_ptr/shared_array.hpp:200:18: warning: '*((void*)(& e)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
         return px[i];
                  ^
In file included from sna.cpp:3:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)(& e)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/transitive_closure.hpp:21,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +24)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
transitive_closure.cpp:43:33: note: '*((void*)& ei +24)' was declared here
         Graph_dd::edge_iterator ei, e_end;
                                 ^
transitive_closure.cpp:46:50: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
             INTEGER(eList)[i++] = source(*ei, TC);
                                                  ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c wavefront.cpp -o wavefront.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c bbc.cpp -o bbc.o
In file included from bbc.cpp:3:0:
rbgl_trimmed_boost_1_61_0/boost/graph/bc_clustering.hpp: In function 'void boost::betweenness_centrality_clustering(MutableGraph&, Done, EdgeCentralityMap, VertexIndexMap)':
rbgl_trimmed_boost_1_61_0/boost/graph/bc_clustering.hpp:118:5: warning: typedef 'vertices_size_type' locally defined but not used [-Wunused-local-typedefs]
     vertices_size_type;
     ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c cliques.cpp -o cliques.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c clusteringCoef.cpp -o clusteringCoef.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c dominatorTree.cpp -o dominatorTree.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from edmonds_optimum_branching.hpp:93:0,
                 from edmonds_optimum_branching.cpp:3:
edmonds_optimum_branching_impl.hpp: In function 'void edmonds_optimum_branching(TEdgeListGraph&, TVertexIndexMap, TWeightMap, TInputIterator, TInputIterator, TOutputIterator)':
edmonds_optimum_branching_impl.hpp:522:71: warning: typedef 'EdgeIter' locally defined but not used [-Wunused-local-typedefs]
     typedef typename graph_traits<TEdgeListGraph>::edge_iterator      EdgeIter;
                                                                       ^
edmonds_optimum_branching_impl.hpp:523:71: warning: typedef 'weight_t' locally defined but not used [-Wunused-local-typedefs]
     typedef typename property_traits<TWeightMap>::value_type          weight_t;
                                                                       ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c hcs.cpp -o hcs.o
In file included from mincut.hpp:4:0,
                 from hcs.cpp:2:
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<long long unsigned int> >; typename boost::graph_traits<G>::edges_size_type = long long unsigned int]':
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp:32:42: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
       typename Traits::vertex_descriptor p;
                                          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c incrConnComp.cpp -o incrConnComp.o
In file included from incrConnComp.cpp:2:0:
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXP, SEXP, SEXP, E_IC_METHOD)':
incrConnComp.cpp:74:32: warning: unused variable 'child_index' [-Wunused-variable]
      BOOST_FOREACH(VertexIndex child_index, components[current_index]) {
                                ^
rbgl_trimmed_boost_1_61_0/boost/foreach.hpp:1107:14: note: in definition of macro 'BOOST_FOREACH'
         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
              ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c interfaces.cpp -o interfaces.o
interfaces.cpp: In function 'SEXPREC* BGL_tsort_D(SEXP, SEXP, SEXP)':
interfaces.cpp:57:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:61:62: warning: typedef 'Color' locally defined but not used [-Wunused-local-typedefs]
         typedef property_map<Graph_dd, vertex_color_t>::type Color;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_bfs_D(SEXP, SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:98:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:99:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_dfs_D(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:142:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:143:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_connected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:198:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:199:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_strong_components_D(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:225:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:226:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:252:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:253:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_articulation_points_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:295:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp: In function 'SEXPREC* BGL_edge_connectivity_U(SEXP, SEXP, SEXP, SEXP)':
interfaces.cpp:320:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
interfaces.cpp: In function 'SEXPREC* BGL_sequential_vertex_coloring(SEXP, SEXP, SEXP)':
interfaces.cpp:360:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
interfaces.cpp:361:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
In file included from interfaces.cpp:7:0:
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >; typename boost::graph_traits<G>::degree_size_type = long long unsigned int]':
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp:32:42: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
       typename Traits::vertex_descriptor p;
                                          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c minST.cpp -o minST.o
minST.cpp: In function 'SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)':
minST.cpp:14:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
                                                              ^
minST.cpp: In function 'SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)':
minST.cpp:48:62: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
                                                              ^
minST.cpp: In function 'SEXPREC* BGL_PRIM_U(SEXP, SEXP, SEXP, SEXP)':
minST.cpp:81:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_ud >::edge_descriptor Edge;
                                                            ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>; OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > >; Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>, long long unsigned int, long long unsigned int&>; Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>, long long unsigned int, long long unsigned int&>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long long unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from minST.cpp:2:0:
rbgl_trimmed_boost_1_61_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)& ei +48)' was declared here
       typename graph_traits<Graph>::edge_iterator ei, eiend;
                                                   ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:41:0,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/edge.hpp:25:34: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
         : m_source(s), m_target(d) { }
                                  ^
In file included from minST.cpp:2:0:
rbgl_trimmed_boost_1_61_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' was declared here
       typename graph_traits<Graph>::edge_iterator ei, eiend;
                                                   ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
mincut.cpp:99:19: note: '*((void*)& ei +48)' was declared here
     edge_iterator ei, e_end;
                   ^
mincut.cpp:103:54: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
             INTEGER(eList)[i++] = source(*ei, flow_g);
                                                      ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246:0,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:152:62: warning: '*((void*)(& ei)+32).__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > > > > >::_M_current' may be used uninitialized in this function [-Wmaybe-uninitialized]
                               &(*this->base()).get_property());
                                                              ^
mincut.cpp:99:19: note: '*((void*)(& ei)+32).__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > > > > >::_M_current' was declared here
     edge_iterator ei, e_end;
                   ^
In file included from mincut.hpp:4:0,
                 from mincut.cpp:2:
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = R_adjacency_list<boost::undirectedS, double>; OutputIterator = std::back_insert_iterator<std::vector<long long unsigned int> >; typename boost::graph_traits<G>::edges_size_type = long long unsigned int]':
rbgl_trimmed_boost_1_61_0/boost/graph/edge_connectivity.hpp:32:42: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
       typename Traits::vertex_descriptor p;
                                          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ordering.cpp -o ordering.o
ordering.cpp: In function 'SEXPREC* BGL_min_degree_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:131:53: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
   typedef graph_traits<Graph_dd>::vertex_descriptor Vertex;
                                                     ^
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:180:48: warning: variable 'id' set but not used [-Wunused-but-set-variable]
   property_map<Graph_dd, vertex_index_t>::type id = get(vertex_index, g);
                                                ^
ordering.cpp:174:53: warning: typedef 'Vertex' locally defined but not used [-Wunused-local-typedefs]
   typedef graph_traits<Graph_dd>::vertex_descriptor Vertex;
                                                     ^
ordering.cpp: In function 'SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:230:47: warning: typedef 'Pair' locally defined but not used [-Wunused-local-typedefs]
   typedef std::pair<std::size_t, std::size_t> Pair;
                                               ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c planar.cpp -o planar.o
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)':
planar.cpp:161:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
            for ( int i = 0; i < v_vis.f_vis.size(); i++ )
                               ^
planar.cpp:165:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for ( int j = 0; j < v_vis.f_vis[i].size(); j++ )
                                    ^
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)':
planar.cpp:256:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for ( int i = 0; i < ordering.size(); i++ )
                        ^
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)':
planar.cpp:369:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for ( int i = 0, j = 0; i < num_vertices(g); i++ )
                            ^
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)':
planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable]
  int i, j = 0;
      ^
In file included from planar.cpp:5:0:
rbgl_trimmed_boost_1_61_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int> >; OutputIterator = std::back_insert_iterator<std::vector<long long unsigned int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int>]':
rbgl_trimmed_boost_1_61_0/boost/graph/planar_canonical_ordering.hpp:152:22: warning: 'second_vertex' may be used uninitialized in this function [-Wmaybe-uninitialized]
                      !(first_vertex == x && second_vertex == u)
                      ^
In file included from planar.cpp:6:0:
rbgl_trimmed_boost_1_61_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int> >; ForwardIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<coord_t*, std::vector<coord_t> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int>]':
rbgl_trimmed_boost_1_61_0/boost/graph/chrobak_payne_drawing.hpp:217:22: warning: 'next_to_rightmost' may be used uninitialized in this function [-Wmaybe-uninitialized]
             vertex_t next_to_rightmost;
                      ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/boyer_myrvold_planar_test.hpp:12:0,
                 from planar.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >; EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, int&, long long unsigned int, boost::property<boost::edge_index_t, int>, boost::edge_index_t>; Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int>; StoreOldHandlesPolicy = boost::graph::detail::store_old_handles; StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237:16: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       vertex_t z; 
                ^
rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1437:11: warning: 'bicomp_root' may be used uninitialized in this function [-Wmaybe-uninitialized]
           z = kuratowski_walkup(v,
           ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/depth_first_search.hpp:21:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:19,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/boyer_myrvold_planar_test.hpp:12,
                 from planar.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/graph/named_function_params.hpp: In static member function 'static bool boost::maximum_cardinality_matching_verifier<Graph, MateMap, VertexIndexMap>::verify_matching(const Graph&, MateMap, VertexIndexMap) [with Graph = R_adjacency_list<boost::undirectedS, int>; MateMap = long long unsigned int*; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>]':
rbgl_trimmed_boost_1_61_0/boost/graph/named_function_params.hpp:124:64: warning: '*((void*)& occ +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
     bgl_named_params(T v, const Base& b) : m_value(v), m_base(b) { }
                                                                ^
In file included from planar.cpp:11:0:
rbgl_trimmed_boost_1_61_0/boost/graph/max_cardinality_matching.hpp:820:48: note: '*((void*)& occ +16)' was declared here
       detail::odd_components_counter<v_size_t> occ(num_odd_components);
                                                ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c shortestPath.cpp -o shortestPath.o
shortestPath.cpp: In function 'SEXPREC* BGL_dijkstra_shortest_paths_D(SEXP, SEXP, SEXP, SEXP, SEXP)':
shortestPath.cpp:17:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
shortestPath.cpp: In function 'SEXPREC* BGL_dag_shortest_paths(SEXP, SEXP, SEXP, SEXP, SEXP)':
shortestPath.cpp:136:60: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef graph_traits < Graph_dd >::edge_descriptor Edge;
                                                            ^
shortestPath.cpp: In function 'SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)':
shortestPath.cpp:177:81: warning: typedef 'Graph' locally defined but not used [-Wunused-local-typedefs]
         property< edge_weight_t, double, property< edge_weight2_t, double > > > Graph;
                                                                                 ^
shortestPath.cpp:180:39: warning: typedef 'Edge' locally defined but not used [-Wunused-local-typedefs]
         typedef std::pair < int, int >Edge;
                                       ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>; Size = long long unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& i +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from shortestPath.cpp:4:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)& i +48)' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property> >; Size = int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; PredecessorMap = long long unsigned int*; DistanceMap = double*; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& i +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from shortestPath.cpp:4:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)& i +48)' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from RBGL.hpp:16:0,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/property_map/property_map.hpp:127:65: warning: '*((void*)(& i)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
   inline const T& get(const T* pa, std::ptrdiff_t k) { return pa[k]; }
                                                                 ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from shortestPath.cpp:4:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)(& i)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::floyd_warshall_all_pairs_shortest_paths(const VertexAndEdgeListGraph&, DistanceMatrix&, const WeightMap&, const BinaryPredicate&, const BinaryFunction&, const Infinity&, const Zero&) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long long unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; Zero = double]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& first +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from shortestPath.cpp:7:0:
rbgl_trimmed_boost_1_61_0/boost/graph/floyd_warshall_shortest.hpp:111:66: note: '*((void*)& first +48)' was declared here
     typename graph_traits<VertexAndEdgeListGraph>::edge_iterator first, last;
                                                                  ^
rbgl_trimmed_boost_1_61_0/boost/graph/floyd_warshall_shortest.hpp:125:12: warning: '*((void*)(& first)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if (d[source(*first, g)][target(*first, g)] != inf) {
            ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_bellman_ford_shortest_paths(SEXP, SEXP, SEXP, SEXP, SEXP)':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
shortestPath.cpp:101:50: note: '*((void*)& ei +48)' was declared here
         graph_traits< EdgeGraph >::edge_iterator ei, ei_end;
                                                  ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& e +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)& e +48)' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/shared_array.hpp:17:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/detail/d_ary_heap.hpp:20,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/named_function_params.hpp:24,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/dijkstra_shortest_paths.hpp:20,
                 from shortestPath.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/smart_ptr/shared_array.hpp:200:18: warning: '*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
         return px[i];
                  ^
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& e +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:84:39: note: '*((void*)& e +48)' was declared here
       typename Traits1::edge_iterator e, e_end;
                                       ^
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:88:70: warning: '*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
                                      get(id1, target(*e, g1)) + 1, g2);
                                                                      ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c sna.cpp -o sna.o
sna.cpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
sna.cpp:161:9: warning: variable 'res_cap' set but not used [-Wunused-but-set-variable]
         res_cap = get(edge_residual_capacity, flow_g);
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>; Size = long long unsigned int; WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>; PredecessorMap = boost::dummy_property_map; DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>; BinaryFunction = boost::closed_plus<double>; BinaryPredicate = std::less<double>; BellmanFordVisitor = boost::bellman_visitor<>]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& i +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:28:0,
                 from sna.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/graph/bellman_ford_shortest_paths.hpp:106:37: note: '*((void*)& i +48)' was declared here
     typename GTraits::edge_iterator i, end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>; Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& e +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
In file included from sna.cpp:3:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)& e +48)' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
In file included from rbgl_trimmed_boost_1_61_0/boost/property_map/shared_array_property_map.hpp:13:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:27,
                 from sna.cpp:3:
rbgl_trimmed_boost_1_61_0/boost/smart_ptr/shared_array.hpp:200:18: warning: '*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
         return px[i];
                  ^
In file included from sna.cpp:3:0:
rbgl_trimmed_boost_1_61_0/boost/graph/johnson_all_pairs_shortest.hpp:98:37: note: '*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' was declared here
     typename Traits2::edge_iterator e, e_end;
                                     ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_61_0/boost/graph/detail/adjacency_list.hpp:34:0,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/adjacency_list.hpp:246,
                 from rbgl_trimmed_boost_1_61_0/boost/graph/transitive_closure.hpp:21,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)':
rbgl_trimmed_boost_1_61_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)& ei +48)' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if (edges BOOST_GRAPH_MEMBER first == edges BOOST_GRAPH_MEMBER second) 
         ^
transitive_closure.cpp:43:33: note: '*((void*)& ei +48)' was declared here
         Graph_dd::edge_iterator ei, e_end;
                                 ^
transitive_closure.cpp:46:50: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wmaybe-uninitialized]
             INTEGER(eList)[i++] = source(*ei, TC);
                                                  ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_61_0    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c wavefront.cpp -o wavefront.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RBGL' as RBGL_1.52.0.zip
* DONE (RBGL)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'RBGL' successfully unpacked and MD5 sums checked