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BioC 3.5: BUILD BIN report for PureCN on tokay2

This page was generated on 2017-10-18 14:26:00 -0400 (Wed, 18 Oct 2017).

Package 1029/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PureCN 1.6.3
Markus Riester
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/PureCN
Branch: RELEASE_3_5
Last Commit: 3e65d37
Last Changed Date: 2017-05-26 22:47:22 -0400 (Fri, 26 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PureCN
Version: 1.6.3
Command: cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.6.3.zip . & cd ../..
StartedAt: 2017-10-18 04:53:37 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 04:54:11 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 33.4 seconds
RetCode: 0
Status:  OK  
PackageFile: PureCN_1.6.3.zip
PackageFileSize: 7.34 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.6.3.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (264 bytes security) (deflated 58%)
  adding: data/ (304 bytes security) (stored 0%)
  adding: data/centromeres.rda (264 bytes security) (stored 0%)
  adding: data/purecn.example.output.rda (264 bytes security) (deflated 0%)
  adding: DESCRIPTION (264 bytes security) (deflated 44%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/index.html (264 bytes security) (deflated 66%)
  adding: doc/PureCN.pdf (264 bytes security) (deflated 9%)
  adding: doc/PureCN.R (264 bytes security) (deflated 72%)
  adding: doc/PureCN.Rnw (264 bytes security) (deflated 69%)
  adding: doc/Quick.pdf (264 bytes security) (deflated 8%)
  adding: doc/Quick.R (264 bytes security) (deflated 53%)
  adding: doc/Quick.Rnw (264 bytes security) (deflated 61%)
  adding: extdata/ (304 bytes security) (stored 0%)
  adding: extdata/Coverage.R (264 bytes security) (deflated 68%)
  adding: extdata/downloadCentromeres.R (264 bytes security) (deflated 55%)
  adding: extdata/ex1.bam (264 bytes security) (deflated 0%)
  adding: extdata/ex1.bam.bai (264 bytes security) (deflated 63%)
  adding: extdata/ex1_gcgene.txt (264 bytes security) (deflated 31%)
  adding: extdata/ex1_intervals.txt (264 bytes security) (deflated 35%)
  adding: extdata/ex2_intervals.bed (264 bytes security) (deflated 46%)
  adding: extdata/ex2_intervals.txt (264 bytes security) (deflated 34%)
  adding: extdata/ex2_reference.fa (264 bytes security) (deflated 63%)
  adding: extdata/ex2_reference.fa.fai (264 bytes security) (deflated 22%)
  adding: extdata/example_cosmic.vcf.gz (264 bytes security) (stored 0%)
  adding: extdata/example_cosmic.vcf.gz.tbi (264 bytes security) (deflated 39%)
  adding: extdata/example_gc.gene.file.txt (264 bytes security) (deflated 70%)
  adding: extdata/example_normal.list (264 bytes security) (deflated 31%)
  adding: extdata/example_normal.txt (264 bytes security) (deflated 59%)
  adding: extdata/example_normal2.txt (264 bytes security) (deflated 59%)
  adding: extdata/example_seg.txt (264 bytes security) (deflated 57%)
  adding: extdata/example_tumor.txt (264 bytes security) (deflated 59%)
  adding: extdata/example_vcf.vcf (264 bytes security) (deflated 74%)
  adding: extdata/IntervalFile.R (264 bytes security) (deflated 57%)
  adding: extdata/NormalDB.R (264 bytes security) (deflated 65%)
  adding: extdata/PureCN.R (264 bytes security) (deflated 74%)
  adding: extdata/test_coverage_overlapping_intervals.txt (264 bytes security) (deflated 55%)
  adding: help/ (304 bytes security) (stored 0%)
  adding: help/aliases.rds (264 bytes security) (stored 0%)
  adding: help/AnIndex (264 bytes security) (deflated 68%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: help/PureCN.rdb (264 bytes security) (deflated 1%)
  adding: help/PureCN.rdx (264 bytes security) (stored 0%)
  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 75%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: INDEX (264 bytes security) (deflated 64%)
  adding: MD5 (264 bytes security) (deflated 49%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/data.rds (264 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
  adding: Meta/package.rds (264 bytes security) (stored 0%)
  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 72%)
  adding: NEWS (264 bytes security) (deflated 55%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/PureCN (264 bytes security) (deflated 41%)
  adding: R/PureCN.rdb (264 bytes security) (deflated 0%)
  adding: R/PureCN.rdx (264 bytes security) (stored 0%)
  adding: unitTests/ (304 bytes security) (stored 0%)
  adding: unitTests/test_autoCurateResults.R (264 bytes security) (deflated 56%)
  adding: unitTests/test_bootstrapResults.R (264 bytes security) (deflated 66%)
  adding: unitTests/test_calculateBamCoverageByInterval.R (264 bytes security) (deflated 60%)
  adding: unitTests/test_calculateGCContentByInterval.R (264 bytes security) (deflated 66%)
  adding: unitTests/test_calculatePowerDetectSomatic.R (264 bytes security) (deflated 73%)
  adding: unitTests/test_callAlterations.R (264 bytes security) (deflated 54%)
  adding: unitTests/test_callAlterationsFromSegmentation.R (264 bytes security) (deflated 54%)
  adding: unitTests/test_callLOH.R (264 bytes security) (deflated 34%)
  adding: unitTests/test_correctCoverageBias.R (264 bytes security) (deflated 72%)
  adding: unitTests/test_createCurationFile.R (264 bytes security) (deflated 80%)
  adding: unitTests/test_createNormalDatabase.R (264 bytes security) (deflated 73%)
  adding: unitTests/test_filterVcf.R (264 bytes security) (deflated 66%)
  adding: unitTests/test_findFocal.R (264 bytes security) (deflated 48%)
  adding: unitTests/test_getDiploid.R (264 bytes security) (deflated 52%)
  adding: unitTests/test_getSexFromCoverage.R (264 bytes security) (deflated 71%)
  adding: unitTests/test_getSexFromVcf.R (264 bytes security) (deflated 37%)
  adding: unitTests/test_poolCoverage.R (264 bytes security) (deflated 65%)
  adding: unitTests/test_predictSomatic.R (264 bytes security) (deflated 62%)
  adding: unitTests/test_readCoverageFile.R (264 bytes security) (deflated 55%)
  adding: unitTests/test_runAbsoluteCN.R (264 bytes security) (deflated 81%)
  adding: unitTests/test_setMappingBiasVcf.R (264 bytes security) (deflated 52%)
  adding: unitTests/test_setPriorVcf.R (264 bytes security) (deflated 44%)