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### Running command:
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### cd MutationalPatterns.buildbin-libdir/MutationalPatterns && zip -r ../../MutationalPatterns_1.2.1.zip . & cd ../..
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adding: DESCRIPTION (264 bytes security) (deflated 45%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/index.html (264 bytes security) (deflated 63%)
adding: doc/Introduction_to_MutationalPatterns.pdf (264 bytes security) (deflated 28%)
adding: doc/Introduction_to_MutationalPatterns.R (264 bytes security) (deflated 83%)
adding: doc/Introduction_to_MutationalPatterns.Rnw (264 bytes security) (deflated 70%)
adding: extdata/ (304 bytes security) (stored 0%)
adding: extdata/callableloci-sample.bed (264 bytes security) (deflated 64%)
adding: extdata/colon1-sample.vcf (264 bytes security) (deflated 78%)
adding: extdata/colon2-sample.vcf (264 bytes security) (deflated 78%)
adding: extdata/colon3-sample.vcf (264 bytes security) (deflated 79%)
adding: extdata/intestine1-sample.vcf (264 bytes security) (deflated 79%)
adding: extdata/intestine2-sample.vcf (264 bytes security) (deflated 79%)
adding: extdata/intestine3-sample.vcf (264 bytes security) (deflated 79%)
adding: extdata/liver1-sample.vcf (264 bytes security) (deflated 75%)
adding: extdata/liver2-sample.vcf (264 bytes security) (deflated 79%)
adding: extdata/liver3-sample.vcf (264 bytes security) (deflated 76%)
adding: extdata/signatures_probabilities.txt (264 bytes security) (deflated 69%)
adding: help/ (304 bytes security) (stored 0%)
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adding: help/AnIndex (264 bytes security) (deflated 70%)
adding: help/MutationalPatterns.rdb (264 bytes security) (deflated 1%)
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adding: NAMESPACE (264 bytes security) (deflated 67%)
adding: NEWS (264 bytes security) (deflated 71%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/MutationalPatterns (264 bytes security) (deflated 41%)
adding: R/MutationalPatterns.rdb (264 bytes security) (deflated 2%)
adding: R/MutationalPatterns.rdx (264 bytes security) (stored 0%)
adding: states/ (304 bytes security) (stored 0%)
adding: states/CTCF_g_data.rds (264 bytes security) (deflated 0%)
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adding: states/genes_hg19.rds (264 bytes security) (deflated 1%)
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adding: states/nmf_res_data.rds (264 bytes security) (stored 0%)
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adding: states/read_vcfs_as_granges_output.rds (264 bytes security) (deflated 12%)
adding: states/regulatory_data.rds (264 bytes security) (stored 0%)
adding: states/TF_binding_g_data.rds (264 bytes security) (deflated 0%)