BioC 3.5: CHECK report for MoonlightR on oaxaca
This page was generated on 2017-03-04 16:53:24 -0500 (Sat, 04 Mar 2017).
MoonlightR 1.1.0 Antonio Colaprico
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MoonlightR | Last Changed Rev: 122712 / Revision: 127142 | Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
toluca2 | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: MoonlightR |
Version: 1.1.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MoonlightR_1.1.0.tar.gz |
StartedAt: 2017-03-04 06:02:27 -0800 (Sat, 04 Mar 2017) |
EndedAt: 2017-03-04 06:09:52 -0800 (Sat, 04 Mar 2017) |
EllapsedTime: 445.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MoonlightR.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MoonlightR_1.1.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/MoonlightR.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MoonlightR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MoonlightR’ version ‘1.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MoonlightR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
data 3.1Mb
doc 3.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
URA 17.105 0.437 17.592
FEA 5.863 0.285 6.161
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.5-bioc/meat/MoonlightR.Rcheck/00check.log’
for details.
MoonlightR.Rcheck/00install.out:
* installing *source* package ‘MoonlightR’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MoonlightR)
MoonlightR.Rcheck/MoonlightR-Ex.timings:
name | user | system | elapsed
|
DPA | 4.269 | 0.226 | 4.499 |
|
FEA | 5.863 | 0.285 | 6.161 |
|
GRN | 3.487 | 0.014 | 3.524 |
|
GSEA | 0.001 | 0.001 | 0.000 |
|
LPA | 0.448 | 0.006 | 2.524 |
|
PRA | 0.004 | 0.001 | 0.005 |
|
URA | 17.105 | 0.437 | 17.592 |
|
getDataGEO | 0 | 0 | 0 |
|
getDataTCGA | 0.001 | 0.000 | 0.000 |
|
moonlight | 4.295 | 0.215 | 4.516 |
|
plotCircos | 3.013 | 0.014 | 3.034 |
|
plotFEA | 1.235 | 0.021 | 1.256 |
|
plotNetworkHive | 0.138 | 0.005 | 0.145 |
|
plotURA | 0.141 | 0.004 | 0.146 |
|