BioC 3.5: CHECK report for MBttest on oaxaca
This page was generated on 2017-03-04 16:51:47 -0500 (Sat, 04 Mar 2017).
MBttest 1.3.0 Yuan-De Tan
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MBttest | Last Changed Rev: 122712 / Revision: 127142 | Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
toluca2 | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: MBttest |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MBttest_1.3.0.tar.gz |
StartedAt: 2017-03-04 05:20:07 -0800 (Sat, 04 Mar 2017) |
EndedAt: 2017-03-04 05:20:41 -0800 (Sat, 04 Mar 2017) |
EllapsedTime: 34.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MBttest.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MBttest_1.3.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/MBttest.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MBttest/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MBttest’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MBttest’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MBttest.Rcheck/00install.out:
* installing *source* package ‘MBttest’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MBttest)
MBttest.Rcheck/MBttest-Ex.timings:
name | user | system | elapsed
|
MBttest-package | 1.734 | 0.051 | 1.785 |
|
betaparametVP | 0.164 | 0.009 | 0.172 |
|
betaparametab | 0.000 | 0.000 | 0.001 |
|
betaparametw | 0 | 0 | 0 |
|
betattest | 0.531 | 0.022 | 0.553 |
|
dat | 0.050 | 0.003 | 0.054 |
|
jkttcell | 0.032 | 0.003 | 0.034 |
|
maplot | 0.444 | 0.006 | 0.452 |
|
mbetattest | 2.410 | 0.020 | 2.432 |
|
mtprocedure | 0.025 | 0.001 | 0.026 |
|
mtpvadjust | 0.004 | 0.000 | 0.004 |
|
myheatmap | 4.834 | 0.068 | 4.910 |
|
oddratio | 0.001 | 0.000 | 0.001 |
|
pratio | 0.001 | 0.000 | 0.001 |
|
simulat | 0.247 | 0.004 | 0.251 |
|
skjt | 0.047 | 0.003 | 0.050 |
|
smbetattest | 0.807 | 0.018 | 0.827 |
|