BioC 3.5: CHECK report for HilbertCurve on malbec2

Package: HilbertCurve

Version: 1.6.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.6.0.tar.gz

StartedAt: 2017-10-17 23:59:33 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-18 00:01:39 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 125.5 seconds

RetCode: 0

Status:  OK

CheckDir: HilbertCurve.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        12.120  0.136  12.262
hc_layer-GenomicHilbertCurve-method  9.536  0.056   9.595
GenomicHilbertCurve                  7.812  0.028   8.230
HilbertCurve                         2.352  0.024   7.100
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-bioc/meat/HilbertCurve.Rcheck/00check.log’
for details.

* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertCurve)

name	user	system	elapsed
GenomicHilbertCurve-class	0	0	0
GenomicHilbertCurve	7.812	0.028	8.230
HilbertCurve-class	0	0	0
HilbertCurve	2.352	0.024	7.100
default_overlay	0	0	0
hc_centered_text-HilbertCurve-method	0.152	0.000	0.155
hc_layer-GenomicHilbertCurve-method	9.536	0.056	9.595
hc_layer-HilbertCurve-method	12.120	0.136	12.262
hc_layer-dispatch	0.000	0.000	0.001
hc_level-HilbertCurve-method	0.028	0.000	0.027
hc_map-GenomicHilbertCurve-method	2.788	0.000	2.789
hc_normal_points-HilbertCurve-method	0.000	0.000	0.001
hc_offset-HilbertCurve-method	0.024	0.004	0.028
hc_png-HilbertCurve-method	3.816	0.032	3.848
hc_points-GenomicHilbertCurve-method	0.244	0.004	0.247
hc_points-HilbertCurve-method	0.532	0.004	0.535
hc_points-dispatch	0	0	0
hc_polygon-GenomicHilbertCurve-method	0.404	0.000	0.405
hc_polygon-HilbertCurve-method	0.036	0.000	0.038
hc_polygon-dispatch	0.000	0.000	0.001
hc_rect-GenomicHilbertCurve-method	0.240	0.000	0.241
hc_rect-HilbertCurve-method	0.028	0.004	0.030
hc_rect-dispatch	0.000	0.000	0.001
hc_segmented_points-HilbertCurve-method	0	0	0
hc_segments-GenomicHilbertCurve-method	0.552	0.000	0.553
hc_segments-HilbertCurve-method	0.056	0.000	0.055
hc_segments-dispatch	0	0	0
hc_text-GenomicHilbertCurve-method	0.108	0.000	0.108
hc_text-HilbertCurve-method	0.06	0.00	0.06
hc_text-dispatch	0	0	0
show-HilbertCurve-method	0.008	0.000	0.007
unzoom-HilbertCurve-method	0.008	0.000	0.006
zoom-HilbertCurve-method	0.008	0.000	0.006