Harman 1.4.0
Jason Ross
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/Harman | | Branch: RELEASE_3_5 | | Last Commit: d3ad60c | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | [ OK ] | |
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### Running command:
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### rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Harman.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harman.buildbin-libdir Harman_1.4.0.tar.gz'
>>>>>>>
* installing *source* package ‘Harman’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "Rcpp:::CxxFlags()"` -I. -fPIC -Wall -g -O2 -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:
./CSelectRandom.h:392:11: warning: unused variable 'currindex' [-Wunused-variable]
size_t currindex ;
^
./CSelectRandom.h:639:18: warning: unused variable 'time2' [-Wunused-variable]
double time1, time2 ;
^
./CSelectRandom.h:638:20: warning: unused variable 'ts1' [-Wunused-variable]
struct timespec ts1, ts2 ;
^
./CSelectRandom.h:639:11: warning: unused variable 'time1' [-Wunused-variable]
double time1, time2 ;
^
./CSelectRandom.h:638:25: warning: unused variable 'ts2' [-Wunused-variable]
struct timespec ts1, ts2 ;
^
./CSelectRandom.h:1019:23: warning: unused variable 'randData2' [-Wunused-variable]
size_t randData1, randData2 ;
^
6 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Harman.so Harman.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/Harman.buildbin-libdir/Harman/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Harman)
>>>>>>>
>>>>>>> FIXING LINKS FOR Harman.buildbin-libdir/Harman/libs//Harman.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"