BioC 3.5: INSTALL report for HMMcopy on malbec2

Package: HMMcopy

Version: 1.18.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL HMMcopy

StartedAt: 2017-10-17 18:00:52 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 18:01:00 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 8.3 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL HMMcopy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘HMMcopy’ ...
** libs
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c forward_backward.c -o forward_backward.o
forward_backward.c: In function ‘forward_backward’:
forward_backward.c:28:13: warning: unused variable ‘tmp’ [-Wunused-variable]
   int K, T, tmp;
             ^
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c register.c -o register.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c viterbi.c -o viterbi.o
viterbi.c: In function ‘viterbi’:
viterbi.c:21:13: warning: unused variable ‘tmp’ [-Wunused-variable]
   int K, T, tmp;
             ^
gcc -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o HMMcopy.so forward_backward.o register.o viterbi.o -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/HMMcopy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HMMcopy)