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BioC 3.5: BUILD report for GGtools on oaxaca

This page was generated on 2017-03-04 16:34:50 -0500 (Sat, 04 Mar 2017).

Package 540/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GGtools 5.11.0
VJ Carey
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GGtools
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: GGtools
Version: 5.11.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GGtools
StartedAt: 2017-03-03 15:59:49 -0800 (Fri, 03 Mar 2017)
EndedAt: 2017-03-03 16:01:07 -0800 (Fri, 03 Mar 2017)
EllapsedTime: 78.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GGtools
###
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* checking for file ‘GGtools/DESCRIPTION’ ... OK
* preparing ‘GGtools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: replacing previous import ‘IRanges::which’ by ‘Matrix::which’ when loading ‘GGBase’
Loading required package: illuminaHumanv1.db

NOTE: some SNP in rsid were not found in location db SNPlocs.Hsapiens.dbSNP144.GRCh37

Error: processing vignette 'GGtools.Rnw' failed with diagnostics:
 chunk 9 (label = dopl) 
Error in .local(x, y, ...) : no locations found for tested SNP
Execution halted