BioC 3.5: CHECK report for GEOmetadb on tokay2

Package: GEOmetadb

Version: 1.36.0

Command: rm -rf GEOmetadb.buildbin-libdir GEOmetadb.Rcheck && mkdir GEOmetadb.buildbin-libdir GEOmetadb.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GEOmetadb.buildbin-libdir GEOmetadb_1.36.0.tar.gz >GEOmetadb.Rcheck\00install.out 2>&1 && cp GEOmetadb.Rcheck\00install.out GEOmetadb-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=GEOmetadb.buildbin-libdir --install="check:GEOmetadb-install.out" --force-multiarch --no-vignettes --timings GEOmetadb_1.36.0.tar.gz

StartedAt: 2017-10-18 00:07:44 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 00:24:44 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 1020.3 seconds

RetCode: 0

Status:  OK

CheckDir: GEOmetadb.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf GEOmetadb.buildbin-libdir GEOmetadb.Rcheck && mkdir GEOmetadb.buildbin-libdir GEOmetadb.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GEOmetadb.buildbin-libdir GEOmetadb_1.36.0.tar.gz >GEOmetadb.Rcheck\00install.out 2>&1 && cp GEOmetadb.Rcheck\00install.out GEOmetadb-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=GEOmetadb.buildbin-libdir --install="check:GEOmetadb-install.out" --force-multiarch --no-vignettes --timings GEOmetadb_1.36.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/GEOmetadb.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GEOmetadb/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOmetadb' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'GEOmetadb' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getSQLiteFile: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file
Consider adding
  importFrom("utils", "download.file")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/GEOmetadb.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GEOmetadb' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GEOmetadb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GEOmetadb' as GEOmetadb_1.36.0.zip
* DONE (GEOmetadb)

name	user	system	elapsed
GEOmetadb-package	0	0	0
columnDescriptions	0	0	0
geoConvert	0	0	0
getBiocPlatformMap	0	0	0
getSQLiteFile	0	0	0

name	user	system	elapsed
GEOmetadb-package	0	0	0
columnDescriptions	0	0	0
geoConvert	0	0	0
getBiocPlatformMap	0	0	0
getSQLiteFile	0	0	0