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BioC 3.5: BUILD BIN report for FitHiC on veracruz2

This page was generated on 2017-10-18 14:35:00 -0400 (Wed, 18 Oct 2017).

Package 442/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FitHiC 1.2.0
Ruyu Tan
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/FitHiC
Branch: RELEASE_3_5
Last Commit: f517560
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: FitHiC
Version: 1.2.0
Command: rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FitHiC_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FitHiC.buildbin-libdir
StartedAt: 2017-10-18 10:52:49 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:53:03 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 14.4 seconds
RetCode: 0
Status:  OK 
PackageFile: FitHiC_1.2.0.tgz
PackageFileSize: 27.95 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FitHiC_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FitHiC.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FitHiC.buildbin-libdir FitHiC_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package ‘FitHiC’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c FitHiC_init.c -o FitHiC_init.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c helper.cpp -o helper.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FitHiC.so FitHiC_init.o RcppExports.o helper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/FitHiC.buildbin-libdir/FitHiC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FitHiC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"