DNAcopy 1.50.1
Venkatraman E. Seshan
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/DNAcopy | | Branch: RELEASE_3_5 | | Last Commit: a201530 | | Last Changed Date: 2017-05-05 15:32:27 -0400 (Fri, 05 May 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL DNAcopy
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘DNAcopy’ ...
** libs
f95 -fpic -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:283:0:
iseg(2) = tmaxj
^
Warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cbsWtstats.f:282:0:
iseg(1) = tmaxi
^
Warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
f95 -fpic -g -O2 -Wall -c cbststats.f -o cbststats.o
cbststats.f:258:0:
tmaxj = sxmxi + i2j
^
Warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
f95 -fpic -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
f95 -fpic -g -O2 -Wall -c changepoints.f -o changepoints.o
f95 -fpic -g -O2 -Wall -c esegment.f -o esegment.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fpnorm.c -o fpnorm.o
f95 -fpic -g -O2 -Wall -c getbdry.f -o getbdry.o
f95 -fpic -g -O2 -Wall -c prune.f -o prune.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c rshared.c -o rshared.o
f95 -fpic -g -O2 -Wall -c segmentp.f -o segmentp.o
f95 -fpic -g -O2 -Wall -c smoothCNA.f -o smoothCNA.o
f95 -fpic -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DNAcopy)