Mike Jiang
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) |
| URL: https://git.bioconductor.org/packages/CytoML |
| Branch: RELEASE_3_5 |
| Last Commit: d92743e |
| Last Changed Date: 2017-07-24 15:15:28 -0400 (Mon, 24 Jul 2017) |
| Back to the "Multiple platform build/check report" | A B [C] D E F G H I J K L M N O P Q R S T U V W X Y Z |
This page was generated on 2017-10-18 14:26:13 -0400 (Wed, 18 Oct 2017).
| Package 310/1381 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CytoML 1.2.1 Mike Jiang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ ERROR ] | OK | |||||||
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| Package: CytoML |
| Version: 1.2.1 |
| Command: rm -rf CytoML.buildbin-libdir CytoML.Rcheck && mkdir CytoML.buildbin-libdir CytoML.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CytoML.buildbin-libdir CytoML_1.2.1.tar.gz >CytoML.Rcheck\00install.out 2>&1 && cp CytoML.Rcheck\00install.out CytoML-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=CytoML.buildbin-libdir --install="check:CytoML-install.out" --force-multiarch --no-vignettes --timings CytoML_1.2.1.tar.gz |
| StartedAt: 2017-10-17 23:08:50 -0400 (Tue, 17 Oct 2017) |
| EndedAt: 2017-10-17 23:18:03 -0400 (Tue, 17 Oct 2017) |
| EllapsedTime: 553.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: CytoML.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf CytoML.buildbin-libdir CytoML.Rcheck && mkdir CytoML.buildbin-libdir CytoML.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CytoML.buildbin-libdir CytoML_1.2.1.tar.gz >CytoML.Rcheck\00install.out 2>&1 && cp CytoML.Rcheck\00install.out CytoML-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=CytoML.buildbin-libdir --install="check:CytoML-install.out" --force-multiarch --no-vignettes --timings CytoML_1.2.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/CytoML.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CytoML/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CytoML' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CytoML' can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.6Mb
sub-directories of 1Mb or more:
doc 2.6Mb
libs 6.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Versioned 'LinkingTo' value for 'BH' is only usable in R >= 3.0.2
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
'flowUtils:::.fuEnv' 'flowUtils:::smartTreeParse'
'flowWorkspace:::.cpp_getCompensation'
'flowWorkspace:::.fix_channel_slash' 'flowWorkspace:::.groupByTree'
'flowWorkspace:::compute.timestep' 'flowWorkspace:::isHidden'
'flowWorkspace:::isNegated'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.preprocessorDiva: no visible global function definition for 'menu'
.preprocessorDiva: no visible binding for global variable 'specimen'
.preprocessorDiva: no visible binding for global variable
'sampleSelected'
GatingSet2flowJo: no visible global function definition for 'pData<-'
addCustomInfo : <anonymous>: no visible global function definition for
'is'
addGate: no visible binding for global variable 'id'
addGate: no visible binding for global variable 'gate_id'
addGate: no visible binding for global variable 'fcs'
addGate: no visible binding for global variable 'gate_def'
addGate: no visible binding for global variable 'name'
compare.counts: no visible binding for global variable 'population'
compare.counts: no visible binding for global variable 'parent'
compare.counts: no visible binding for global variable 'count'
compare.counts: no visible binding for global variable 'parent_count'
compare.counts: no visible global function definition for '.'
compare.counts: no visible binding for global variable 'fcs_filename'
constructTree : <anonymous>: no visible binding for global variable
'slot'
constructTree: no visible binding for global variable 'id'
constructTree: no visible binding for global variable 'name'
extend.ellipsoidGate: no visible global function definition for 'as'
extend.polygonGate : <anonymous>: no visible binding for global
variable 'y'
extend.polygonGate : <anonymous>: no visible binding for global
variable 'x'
extend.polygonGate: no visible binding for global variable 'id'
extend.polygonGate: no visible binding for global variable 'x'
extend.polygonGate: no visible binding for global variable 'y'
extend.polygonGate: no visible binding for global variable 'is.smaller'
extend.polygonGate: no visible global function definition for 'rgb'
extend.rectangleGate: no visible global function definition for 'as'
gateNode.ellipsoidGate: no visible global function definition for 'as'
inverse.ellipsoidGate: no visible global function definition for 'as'
inverse.rectangleGate: no visible global function definition for 'as'
openDiva: no visible global function definition for 'new'
read.gatingML.cytobank: no visible global function definition for 'is'
read.gatingML.cytobank: no visible binding for global variable 'id'
read.gatingML.cytobank: no visible binding for global variable
'comp_ref'
read.gatingML.cytobank : <anonymous>: no visible global function
definition for 'is'
read.gatingML.cytobank: no visible global function definition for 'as'
subPopulationNode : <anonymous>: no visible global function definition
for 'is'
subPopulationNode : <anonymous> : <anonymous>: no visible global
function definition for 'is'
xmlTag: no visible global function definition for 'is'
compensate,GatingSet-graphGML: no visible global function definition
for 'is'
getSamples,divaWorkspace: no visible global function definition for
'selectMethod'
getTransformations,graphGML : <anonymous>: no visible global function
definition for 'extends'
transform,ellipsoidGate: no visible global function definition for 'as'
Undefined global functions or variables:
. as comp_ref count extends fcs fcs_filename gate_def gate_id id is
is.smaller menu name new pData<- parent parent_count population rgb
sampleSelected selectMethod slot specimen x y
Consider adding
importFrom("grDevices", "rgb")
importFrom("methods", "as", "extends", "is", "new", "selectMethod",
"slot")
importFrom("utils", "menu")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'divaWorkspace-class'
'x' 'object' 'obj' '...'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.5-bioc/meat/CytoML.buildbin-libdir/CytoML/libs/i386/CytoML.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Found 'puts', possibly from 'printf' (C), 'puts' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compare.counts 7.25 0.47 8.17
cytobank2GatingSet 5.52 0.39 5.91
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compare.counts 6.64 0.24 7.05
cytobank2GatingSet 5.14 0.23 5.37
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
Warning message:
running command '"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386/R" CMD BATCH --vanilla "testthat.R" "testthat.Rout"' had status 5
ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(CytoML)
>
>
> test_check("CytoML")
Loading required package: flowCore
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: ggplot2
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 6 NOTEs
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/CytoML.Rcheck/00check.log'
for details.
testthat.Rout.fail:
R version 3.4.2 Patched (2017-10-07 r73498) -- "Short Summer"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(CytoML)
>
>
> test_check("CytoML")
Loading required package: flowCore
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: ggplot2
CytoML.Rcheck/00install.out:
install for i386
* installing *source* package 'CytoML' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/POPINDICES.hpp:15:0,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingHierarchy.hpp:13,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingSet.hpp:12,
from CytoML_types.h:1,
from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp: In constructor 'CurlyGuadGate::CurlyGuadGate(paramPoly, QUAD)':
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:438:7: warning: 'CurlyGuadGate::quadrant' will be initialized after [-Wreorder]
QUAD quadrant;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:437:7: warning: 'bool CurlyGuadGate::interpolated' [-Wreorder]
bool interpolated;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:440:2: warning: when initialized here [-Wreorder]
CurlyGuadGate(paramPoly _inter, QUAD _quad):polygonGate(),quadrant(_quad),interpolated(false){
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c setCounts.cpp -o setCounts.o
In file included from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/POPINDICES.hpp:15:0,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingHierarchy.hpp:13,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingSet.hpp:12,
from setCounts.cpp:2:
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp: In constructor 'CurlyGuadGate::CurlyGuadGate(paramPoly, QUAD)':
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:438:7: warning: 'CurlyGuadGate::quadrant' will be initialized after [-Wreorder]
QUAD quadrant;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:437:7: warning: 'bool CurlyGuadGate::interpolated' [-Wreorder]
bool interpolated;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:440:2: warning: when initialized here [-Wreorder]
CurlyGuadGate(paramPoly _inter, QUAD _quad):polygonGate(),quadrant(_quad),interpolated(false){
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o CytoML.dll tmp.def RcppExports.o setCounts.o C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/lib/i386/libflowWorkspace.a C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowCore/lib/i386/libboost_regex.a c:/protobuf//i386/lib/libprotobuf.a c:/libxml2//i386/lib/libxml2.a -lws2_32 -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/CytoML.buildbin-libdir/CytoML/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'CytoML' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/POPINDICES.hpp:15:0,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingHierarchy.hpp:13,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingSet.hpp:12,
from CytoML_types.h:1,
from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp: In constructor 'CurlyGuadGate::CurlyGuadGate(paramPoly, QUAD)':
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:438:7: warning: 'CurlyGuadGate::quadrant' will be initialized after [-Wreorder]
QUAD quadrant;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:437:7: warning: 'bool CurlyGuadGate::interpolated' [-Wreorder]
bool interpolated;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:440:2: warning: when initialized here [-Wreorder]
CurlyGuadGate(paramPoly _inter, QUAD _quad):polygonGate(),quadrant(_quad),interpolated(false){
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c setCounts.cpp -o setCounts.o
In file included from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/POPINDICES.hpp:15:0,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingHierarchy.hpp:13,
from C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/GatingSet.hpp:12,
from setCounts.cpp:2:
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp: In constructor 'CurlyGuadGate::CurlyGuadGate(paramPoly, QUAD)':
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:438:7: warning: 'CurlyGuadGate::quadrant' will be initialized after [-Wreorder]
QUAD quadrant;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:437:7: warning: 'bool CurlyGuadGate::interpolated' [-Wreorder]
bool interpolated;
^
C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/include/flowWorkspace/gate.hpp:440:2: warning: when initialized here [-Wreorder]
CurlyGuadGate(paramPoly _inter, QUAD _quad):polygonGate(),quadrant(_quad),interpolated(false){
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o CytoML.dll tmp.def RcppExports.o setCounts.o C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowWorkspace/lib/x64/libflowWorkspace.a C:/Users/biocbuild/bbs-3.5-bioc/R/library/flowCore/lib/x64/libboost_regex.a c:/protobuf//x64/lib/libprotobuf.a c:/libxml2//x64/lib/libxml2.a -lws2_32 -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/CytoML.buildbin-libdir/CytoML/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CytoML' as CytoML_1.2.1.zip
* DONE (CytoML)
CytoML.Rcheck/examples_i386/CytoML-Ex.timings:
| name | user | system | elapsed | |
| GatingSet2cytobank | 2.20 | 0.09 | 2.40 | |
| GatingSet2flowJo | 1.69 | 0.06 | 1.81 | |
| compare.counts | 7.25 | 0.47 | 8.17 | |
| cytobank2GatingSet | 5.52 | 0.39 | 5.91 | |
| extend | 0.06 | 0.00 | 0.06 | |
| getChildren-graphGML-character-method | 0.61 | 0.00 | 0.60 | |
| getNodes-graphGML-method | 0.61 | 0.00 | 0.61 | |
| openDiva | 0 | 0 | 0 | |
| plot-graphGML-missing-method | 0.75 | 0.02 | 0.77 | |
| read.gatingML.cytobank | 0.64 | 0.03 | 0.67 | |
| set.count.xml | 0 | 0 | 0 | |
CytoML.Rcheck/examples_x64/CytoML-Ex.timings:
| name | user | system | elapsed | |
| GatingSet2cytobank | 3.14 | 0.05 | 3.24 | |
| GatingSet2flowJo | 1.75 | 0.06 | 1.82 | |
| compare.counts | 6.64 | 0.24 | 7.05 | |
| cytobank2GatingSet | 5.14 | 0.23 | 5.37 | |
| extend | 0.11 | 0.00 | 0.11 | |
| getChildren-graphGML-character-method | 0.78 | 0.00 | 0.78 | |
| getNodes-graphGML-method | 0.96 | 0.02 | 0.97 | |
| openDiva | 0 | 0 | 0 | |
| plot-graphGML-missing-method | 1.57 | 0.04 | 1.63 | |
| read.gatingML.cytobank | 1.04 | 0.02 | 1.04 | |
| set.count.xml | 0 | 0 | 0 | |