CINdex 1.4.0
Yuriy Gusev
| Snapshot Date: 2017-10-05 23:41:59 -0400 (Thu, 05 Oct 2017) | | URL: https://git.bioconductor.org/packages/CINdex | | Last Commit: 4ed3640 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf CINdex.buildbin-libdir CINdex.Rcheck && mkdir CINdex.buildbin-libdir CINdex.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CINdex.buildbin-libdir CINdex_1.4.0.tar.gz >CINdex.Rcheck\00install.out 2>&1 && cp CINdex.Rcheck\00install.out CINdex-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=CINdex.buildbin-libdir --install="check:CINdex-install.out" --force-multiarch --no-vignettes --timings CINdex_1.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/CINdex.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CINdex/DESCRIPTION' ... OK
* this is package 'CINdex' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CINdex' can be installed ... WARNING
Found the following significant warnings:
Warning: package 'GenomicRanges' was built under R version 3.4.2
See 'C:/Users/biocbuild/bbs-3.5-bioc/meat/CINdex.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 18.4Mb
sub-directories of 1Mb or more:
data 17.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
comp.heatmap: no visible binding for global variable 'dataMatrix'
process.probe.anno: no visible binding for global variable 'ID'
process.probe.anno: no visible binding for global variable 'midpoint'
process.reference.genome: no visible binding for global variable
'chrom'
process.reference.genome: no visible binding for global variable 'name'
process.reference.genome: no visible binding for global variable
'stain'
Undefined global functions or variables:
ID chrom dataMatrix midpoint name stain
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
run.cin.cyto 15.55 0.53 16.08
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
run.cin.cyto 15.42 0.56 15.98
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'RunTests.R'
OK
** running tests for arch 'x64' ...
Running 'RunTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/CINdex.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'CINdex' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Warning: package 'GenomicRanges' was built under R version 3.4.2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: package 'GenomicRanges' was built under R version 3.4.2
install for x64
* installing *source* package 'CINdex' ...
** testing if installed package can be loaded
Warning: package 'GenomicRanges' was built under R version 3.4.2
* MD5 sums
packaged installation of 'CINdex' as CINdex_1.4.0.zip
* DONE (CINdex)