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BioC 3.5: BUILD BIN report for BufferedMatrixMethods on toluca2

This page was generated on 2017-04-23 14:34:01 -0400 (Sun, 23 Apr 2017).

Package 157/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.39.0
B. M. Bolstad
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 122712 / Revision: 129046
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BufferedMatrixMethods
Version: 1.39.0
Command: rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.39.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
StartedAt: 2017-04-23 11:43:48 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 11:43:57 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 8.7 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrixMethods_1.39.0.tgz
PackageFileSize: 36.87 KiB

Command output

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###
### Running command:
###
###   rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.39.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.39.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BufferedMatrixMethods’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BufferedMatrix/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c init_package.c -o init_package.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BufferedMatrix/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
  int i,j;
      ^
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:453:12: warning: unused function 'min' [-Wunused-function]
static int min(int x1,int x2){
           ^
5 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (BufferedMatrixMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"