BioC 3.5: BUILD BIN report for signeR on oaxaca

Package: signeR

Version: 1.1.5

Command: rm -rf signeR.buildbin-libdir && mkdir signeR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh signeR_1.1.5.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R signeR.buildbin-libdir

StartedAt: 2017-03-04 12:23:46 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 12:24:32 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 45.6 seconds

RetCode: 0

Status:  OK

PackageFile: signeR_1.1.5.tgz

PackageFileSize: 272 KiB

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### Running command:
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###   rm -rf signeR.buildbin-libdir && mkdir signeR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh signeR_1.1.5.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R signeR.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=signeR.buildbin-libdir signeR_1.1.5.tar.gz'
>>>>>>> 

* installing *source* package ‘signeR’ ...
** libs
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2 -c gibbs_2.cpp -o gibbs_2.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c signeR_init.c -o signeR_init.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o signeR.so RcppExports.o gibbs_2.o signeR_init.o -Wl,-S -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/signeR.buildbin-libdir/signeR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (signeR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR signeR.buildbin-libdir/signeR/libs//signeR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "signeR.buildbin-libdir/signeR/libs//signeR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "signeR.buildbin-libdir/signeR/libs//signeR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "signeR.buildbin-libdir/signeR/libs//signeR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "signeR.buildbin-libdir/signeR/libs//signeR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "signeR.buildbin-libdir/signeR/libs//signeR.so"