monocle 2.4.0
Cole Trapnell
| Snapshot Date: 2017-05-17 17:17:30 -0400 (Wed, 17 May 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/monocle | | Last Changed Rev: 129126 / Revision: 129665 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf monocle.buildbin-libdir monocle.Rcheck && mkdir monocle.buildbin-libdir monocle.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=monocle.buildbin-libdir monocle_2.4.0.tar.gz >monocle.Rcheck\00install.out 2>&1 && cp monocle.Rcheck\00install.out monocle-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=monocle.buildbin-libdir --install="check:monocle-install.out" --force-multiarch --no-vignettes --timings monocle_2.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/monocle.Rcheck'
* using R version 3.4.0 (2017-04-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'monocle/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'monocle' version '2.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'monocle' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
assign_cell_lineage: no visible global function definition for 'nei'
buildBranchCellDataSet: no visible global function definition for 'nei'
clusterCells: no visible binding for global variable 'rho'
clusterCells: no visible binding for global variable 'delta'
count_leaf_descendents: no visible global function definition for 'nei'
cth_classifier_cds: no visible global function definition for 'nei'
cth_classifier_cell: no visible global function definition for 'nei'
diff_test_helper: no visible binding for global variable 'Size_Factor'
extract_good_ordering: no visible global function definition for 'nei'
fit_model_helper: no visible binding for global variable 'Size_Factor'
get_next_node_id: no visible binding for '<<-' assignment to
'next_node'
get_next_node_id: no visible binding for global variable 'next_node'
make_canonical: no visible global function definition for 'nei'
measure_diameter_path: no visible global function definition for 'nei'
orderCells: no visible binding for '<<-' assignment to 'next_node'
project2MST: no visible global function definition for 'nei'
Undefined global functions or variables:
Size_Factor delta nei next_node rho
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/monocle.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'monocle' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'monocle' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'monocle' as monocle_2.4.0.zip
* DONE (monocle)