BioC 3.5: CHECK report for lpsymphony on oaxaca

Package: lpsymphony

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings lpsymphony_1.3.0.tar.gz

StartedAt: 2017-03-04 05:02:11 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 05:07:40 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 329.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: lpsymphony.Rcheck

Warnings: 3

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings lpsymphony_1.3.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* this is package ‘lpsymphony’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
  src/WinLib/i386/lpsymphony.dll src/WinLib/x64/lpsymphony.dll
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lpsymphony’ can be installed ... WARNING
Found the following significant warnings:
  CoinMessageHandler.cpp:823:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
See ‘/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Rglpk’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
  src/SYMPHONY/Cgl/examples/Makefile
  src/SYMPHONY/Cgl/examples/Makefile.in
  src/SYMPHONY/Clp/examples/Makefile
  src/SYMPHONY/Clp/examples/Makefile.in
  src/SYMPHONY/Osi/examples/Makefile
  src/SYMPHONY/Osi/examples/Makefile.in
  src/SYMPHONY/SYMPHONY/Applications/CNRP/Makefile
  src/SYMPHONY/SYMPHONY/Applications/CNRP/Makefile.in
  src/SYMPHONY/SYMPHONY/Applications/VRP/Makefile
  src/SYMPHONY/SYMPHONY/Applications/VRP/Makefile.in
  src/SYMPHONY/SYMPHONY/Examples/FLOPC++/Makefile
  src/SYMPHONY/SYMPHONY/Examples/Makefile
  src/SYMPHONY/SYMPHONY/Examples/Makefile.in
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section ‘Writing portable packages’ in
the ‘Writing R Extensions’ manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... WARNING
'library' or 'require' call not declared from: ‘testthat’
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 WARNINGs, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00check.log’
for details.

* installing *source* package ‘lpsymphony’ ...
./configure: line 68: [: too many arguments
configure: loading site script /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin13.4.0
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long  
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether C++ compiler clang++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long  
configure: Trying to determine Fortran compiler name
checking for xlf_r... no
checking for fort77... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang... none
checking dependency style of clang++... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking host system type... i386-apple-darwin13.4.0
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... clang -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... clang++ -E
checking the maximum length of command line arguments... 196608
checking command to parse /usr/bin/nm output from clang object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fno-common
checking if clang PIC flag -fno-common works... yes
checking if clang static flag -static works... no
checking if clang supports -c -o file.o... yes
checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking for clang++ option to produce PIC... -fno-common
checking if clang++ PIC flag -fno-common works... yes
checking if clang++ static flag -static works... no
checking if clang++ supports -c -o file.o... yes
checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
configure: Build is "i386-apple-darwin13.4.0".
configure: Applying patches to libtool for Darwin
checking if library version is set... no
checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
checking whether source of project Sample is available and should be compiled... no
checking whether source of project miblib3 is available and should be compiled... no
checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
checking whether source of project Osi is available and should be compiled... yes, source in Osi
checking whether source of project Clp is available and should be compiled... yes, source in Clp
checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
checking whether source of project DyLP is available and should be compiled... no
checking whether source of project Vol is available and should be compiled... no
checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
checking whether Clp is required... yes
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in CoinUtils
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  'CC=clang' 'CXX=clang++' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin13.4.0
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether C++ compiler clang++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD
configure: Trying to determine Fortran compiler name
checking for xlf_r... no
checking for fort77... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm
configure: Corrected Fortran libraries:  -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2/../../.. -lgfortran -lSystem -lquadmath -lm
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang... none
checking dependency style of clang++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:6:10
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether isfinite is declared... no
checking whether finite is declared... yes
checking for cmath... (cached) yes
checking for cfloat... (cached) yes
checking for cieeefp... (cached) no
checking for ieeefp.h... (cached) no
checking whether isnan is declared... no
checking whether std::isnan(42.42) is declared... yes
checking cinttypes usability... yes
checking cinttypes presence... yes
checking for cinttypes... yes
checking cstdint usability... yes
checking cstdint presence... yes
checking for cstdint... yes
checking for int64_t... yes
checking for intptr_t... yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking endian.h usability... no
checking endian.h presence... no
checking for endian.h... no
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for BLAS in Veclib... yes: -framework Accelerate
checking whether LAPACK is already available with BLAS library... yes: -framework Accelerate
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating coinutils.pc
config.status: creating coinutils-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_coinutils.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of CoinUtils successful
configure: configuring in Osi
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  'CC=clang' 'CXX=clang++' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin13.4.0
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether C++ compiler clang++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang... none
checking dependency style of clang++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:4:12
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package SoPlex... not given: No package 'coinsoplex' found
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for Cplex... no
checking if user provides library for Mosek... no
checking if user provides library for Xpress... no
checking if user provides library for Gurobi... no
configure: WARNING: No solver available, examples will not work.
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Osi/Makefile
config.status: creating src/OsiCpx/Makefile
config.status: creating src/OsiGlpk/Makefile
config.status: creating src/OsiMsk/Makefile
config.status: creating src/OsiXpr/Makefile
config.status: creating src/OsiGrb/Makefile
config.status: creating src/OsiSpx/Makefile
config.status: creating src/OsiCommonTest/Makefile
config.status: creating test/Makefile
config.status: creating osi.pc
config.status: creating osi-uninstalled.pc
config.status: creating osi-unittests.pc
config.status: creating osi-unittests-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/Osi/config.h
config.status: creating src/Osi/config_osi.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Osi successful
configure: configuring in Clp
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  'CC=clang' 'CXX=clang++' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin13.4.0
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether C++ compiler clang++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang... none
checking dependency style of clang++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 14:6:13
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for AMD... no
checking if user provides library for CHOLMOD... no
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Mumps... not given: No package 'coinmumps' found
checking for COIN-OR package ASL... not given: No package 'coinasl' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking for doxygen doc'n for Osi ... ../Osi/doxydoc (tag)
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/OsiClp/Makefile
config.status: creating test/Makefile
config.status: creating clp.pc
config.status: creating clp-uninstalled.pc
config.status: creating osi-clp.pc
config.status: creating osi-clp-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_clp.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Clp successful
configure: configuring in Cgl
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  'CC=clang' 'CXX=clang++' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin13.4.0
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether C++ compiler clang++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang... none
checking dependency style of clang++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 10:4:9
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package OsiClp... yes: 1.16.6 
checking for COIN-OR package OsiCpx... not given: No package 'osi-cplex' found
checking for COIN-OR package OsiGlpk... not given: No package 'osi-glpk' found
checking for COIN-OR package OsiMsk... not given: No package 'osi-mosek' found
checking for COIN-OR package OsiXpr... not given: No package 'osi-xpress' found
checking for COIN-OR package OsiVol... not given: No package 'osi-vol' found
checking for COIN-OR package OsiDyLP... not given: No package 'osi-dylp' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/CglAllDifferent/Makefile
config.status: creating src/CglClique/Makefile
config.status: creating src/CglDuplicateRow/Makefile
config.status: creating src/CglFlowCover/Makefile
config.status: creating src/CglGMI/Makefile
config.status: creating src/CglGomory/Makefile
config.status: creating src/CglKnapsackCover/Makefile
config.status: creating src/CglLandP/Makefile
config.status: creating src/CglLiftAndProject/Makefile
config.status: creating src/CglMixedIntegerRounding/Makefile
config.status: creating src/CglMixedIntegerRounding2/Makefile
config.status: creating src/CglOddHole/Makefile
config.status: creating src/CglPreProcess/Makefile
config.status: creating src/CglProbing/Makefile
config.status: creating src/CglRedSplit/Makefile
config.status: creating src/CglRedSplit2/Makefile
config.status: creating src/CglResidualCapacity/Makefile
config.status: creating src/CglSimpleRounding/Makefile
config.status: creating src/CglTwomir/Makefile
config.status: creating src/CglZeroHalf/Makefile
config.status: creating test/Makefile
config.status: creating cgl.pc
config.status: creating cgl-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_cgl.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Cgl successful
configure: configuring in SYMPHONY
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  'CC=clang' 'CXX=clang++' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin13.4.0
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether C++ compiler clang++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang... none
checking dependency style of clang++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 9:10:6
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinDepend... yes: 2.10.6 0.107.4 
checking for COIN-OR package Clp... yes: 1.16.6 
checking for COIN-OR package DyLP... not given: No package 'osi-dylp' found
checking for COIN-OR package Vol... not given: No package 'osi-vol' found
checking for COIN-OR package Cgl... yes: 0.59.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking for COIN-OR package Miplib3... not given: No package 'coindatamiplib3' found
checking for COIN-OR package Cpx... not given: No package 'osi-cplex' found
checking for COIN-OR package Glpk... not given: No package 'osi-glpk' found
checking for COIN-OR package Msk... not given: No package 'osi-mosek' found
checking for COIN-OR package Xpr... not given: No package 'osi-xpress' found
checking for SYMPHONY default solver... Clp
checking whether to compile with gmpl... no
checking whether to compile application library... no
checking if user provides library for Pvm... no
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/OsiSym/Makefile
config.status: creating test/Makefile
config.status: creating Examples/Makefile
config.status: creating Applications/Makefile.Applications
config.status: creating Applications/CNRP/Makefile
config.status: creating Applications/MATCH/Makefile
config.status: creating Applications/MCKP/Makefile
config.status: creating Applications/MPP/Makefile
config.status: creating Applications/SPP/Makefile
config.status: creating Applications/SPP+CUTS/Makefile
config.status: creating Applications/USER/Makefile
config.status: creating Applications/VRP/Makefile
config.status: creating symphony.pc
config.status: creating symphony-app.pc
config.status: creating symphony-uninstalled.pc
config.status: creating osi-sym.pc
config.status: creating osi-sym-uninstalled.pc
config.status: creating include/config.h
config.status: creating include/config_sym.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of SYMPHONY successful
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Main configuration of SYMPHONY successful
./configure: line 114: --disable-cplex-libcheck: command not found
** libs
Making all in CoinUtils
Making all in src
make  all-am
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinAlloc.lo CoinAlloc.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinAlloc.cpp  -fno-common -DPIC -o CoinAlloc.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinBuild.lo CoinBuild.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinBuild.cpp  -fno-common -DPIC -o CoinBuild.o
In file included from CoinBuild.cpp:18:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinBuild.cpp:93:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memcpy(copyOfItem,item,length);
      ˜˜˜˜˜˜                 ^˜˜˜˜˜
CoinBuild.cpp:153:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memcpy(copyOfItem,item,length);
        ˜˜˜˜˜˜                 ^˜˜˜˜˜
8 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinDenseVector.lo CoinDenseVector.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinDenseVector.cpp  -fno-common -DPIC -o CoinDenseVector.o
In file included from CoinDenseVector.cpp:12:
In file included from ./CoinDenseVector.hpp:17:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinDenseVector.cpp:20:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset(elements_, 0, nElements_*sizeof(T));
                        ^˜˜˜˜˜˜˜˜˜˜
CoinDenseVector.cpp:208:16: note: in instantiation of member function 'CoinDenseVector<float>::clear' requested here
template class CoinDenseVector<float>;
               ^
CoinDenseVector.cpp:20:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset(elements_, 0, nElements_*sizeof(T));
                        ^˜˜˜˜˜˜˜˜˜˜
CoinDenseVector.cpp:209:16: note: in instantiation of member function 'CoinDenseVector<double>::clear' requested here
template class CoinDenseVector<double>;
               ^
8 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinError.lo CoinError.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinError.cpp  -fno-common -DPIC -o CoinError.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFactorization1.lo CoinFactorization1.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFactorization1.cpp  -fno-common -DPIC -o CoinFactorization1.o
In file included from CoinFactorization1.cpp:14:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinFactorization1.cpp:14:
In file included from ./CoinFactorization.hpp:22:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization1.cpp:308:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (areaFactor)
  ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization1.cpp:435:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (areaFactor)
  ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization1.cpp:494:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (areaFactor)
  ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization1.cpp:631:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if ( !areaFactor_ ) {
       ˜^˜˜˜˜˜˜˜˜˜˜
CoinFactorization1.cpp:2094:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if ( areaFactor_ ) {
    ˜˜   ^˜˜˜˜˜˜˜˜˜˜
In file included from CoinFactorization1.cpp:14:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:19:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinFactorization1.cpp:572:5: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
    CoinSort_2(indexRowU_.array()+startColumnU_.array()[i],
    ^
15 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFactorization2.lo CoinFactorization2.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFactorization2.cpp  -fno-common -DPIC -o CoinFactorization2.o
In file included from CoinFactorization2.cpp:16:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinFactorization2.cpp:16:
In file included from ./CoinFactorization.hpp:22:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization2.cpp:520:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  newSize += (numberDense_+1)/(sizeof(CoinFactorizationDouble)/sizeof(int));
              ˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinFactorization2.cpp:521:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  newSize += 2*((numberDense_+3)/(sizeof(CoinFactorizationDouble)/sizeof(short)));
                 ˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinFactorization2.cpp:522:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  newSize += ((numberRows_+3)/(sizeof(CoinFactorizationDouble)/sizeof(short)));
               ˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinFactorization2.cpp:811:26: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if (fwrite(first,last-first,1,fp)!=1)
        ˜˜˜˜˜˜       ˜˜˜˜^˜˜˜˜˜
CoinFactorization2.cpp:898:25: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if (fread(first,last-first,1,fp)!=1)
        ˜˜˜˜˜       ˜˜˜˜^˜˜˜˜˜
In file included from CoinFactorization2.cpp:16:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:916:54: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            static_cast<CoinBigIndex>(fread(array,sizeof(T),newSize,fp));
                                      ˜˜˜˜˜                 ^˜˜˜˜˜˜
CoinFactorization2.cpp:903:9: note: in instantiation of function template specialization 'CoinFromFile<double>' requested here
    if (CoinFromFile(elementU,lengthAreaU_ , fp, newSize )==1)
        ^
In file included from CoinFactorization2.cpp:16:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:916:54: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            static_cast<CoinBigIndex>(fread(array,sizeof(T),newSize,fp));
                                      ˜˜˜˜˜                 ^˜˜˜˜˜˜
CoinFactorization2.cpp:907:9: note: in instantiation of function template specialization 'CoinFromFile<int>' requested here
    if (CoinFromFile(indexRowU,lengthAreaU_ , fp, newSize )==1)
        ^
16 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFactorization3.lo CoinFactorization3.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFactorization3.cpp  -fno-common -DPIC -o CoinFactorization3.o
In file included from CoinFactorization3.cpp:16:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinFactorization3.cpp:16:
In file included from ./CoinFactorization.hpp:22:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization3.cpp:245:11: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (ftranAverageAfterL_) {
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization3.cpp:305:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (value) {
        ˜˜  ^˜˜˜˜
CoinFactorization3.cpp:732:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (ftranAverageAfterR_) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization3.cpp:975:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
    if (ftranAverageAfterR_) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization3.cpp:1071:9: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
    if (pivotValue) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization3.cpp:1140:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if ( value ) {
      ˜˜   ^˜˜˜˜
CoinFactorization3.cpp:1156:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if ( value ) {
      ˜˜   ^˜˜˜˜
CoinFactorization3.cpp:1434:8: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
          if (pivotValue) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization3.cpp:1515:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if ( value ) {
        ˜˜   ^˜˜˜˜
CoinFactorization3.cpp:1534:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if ( value ) {
            ˜˜   ^˜˜˜˜
CoinFactorization3.cpp:1554:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if ( value ) {
        ˜˜   ^˜˜˜˜
CoinFactorization3.cpp:1573:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if ( value ) {
            ˜˜   ^˜˜˜˜
CoinFactorization3.cpp:1905:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) 
      ˜˜  ^˜˜˜˜
CoinFactorization3.cpp:2146:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (value) {
        ˜˜  ^˜˜˜˜
23 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFactorization4.lo CoinFactorization4.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFactorization4.cpp  -fno-common -DPIC -o CoinFactorization4.o
In file included from CoinFactorization4.cpp:16:
In file included from ./CoinFactorization.hpp:22:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinFactorization4.cpp:16:
In file included from ./CoinFactorization.hpp:22:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1133:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
    if (btranAverageAfterU_) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1179:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (region[first]) 
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1265:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (region[first]) 
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1409:23: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if(!mark[kPivot]&&region[kPivot]) {
                    ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1473:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
    if (btranAverageAfterL_) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1511:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (region[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1708:10: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
    if ( pivotValue ) {
    ˜˜   ^˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1755:10: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
    if ( pivotValue ) {
    ˜˜   ^˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:1761:6: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
        if (oldValue) {
        ˜˜  ^˜˜˜˜˜˜˜
CoinFactorization4.cpp:1762:8: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
          if (newValue) 
          ˜˜  ^˜˜˜˜˜˜˜
CoinFactorization4.cpp:1844:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         0,maximumRowsExtra_*sizeof(char));
           ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2020:8: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
CoinFactorization4.cpp:2087:6: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
        if (value) {
        ˜˜  ^˜˜˜˜
CoinFactorization4.cpp:2360:9: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
    if (pivotValue) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2366:9: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
          if (!oldValue) {
              ˜^˜˜˜˜˜˜˜
CoinFactorization4.cpp:2381:18: warning: implicit conversion turns floating-point number into integer: 'CoinFactorizationDouble' (aka 'double') to 'bool' [-Wconversion]
      } else if (pivotValue) {
             ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2422:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!region[pivotRow])
          ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2426:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (region[pivotRow])
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2733:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (btranCountInput_&&btranCountAfterU_&&btranCountAfterR_) {
        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2733:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (btranCountInput_&&btranCountAfterU_&&btranCountAfterR_) {
                        ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinFactorization4.cpp:2733:46: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (btranCountInput_&&btranCountAfterU_&&btranCountAfterR_) {
                                           ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
30 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinSimpFactorization.lo CoinSimpFactorization.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinSimpFactorization.cpp  -fno-common -DPIC -o CoinSimpFactorization.o
In file included from CoinSimpFactorization.cpp:10:
In file included from ./CoinSimpFactorization.hpp:16:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinSimpFactorization.cpp:10:
In file included from ./CoinSimpFactorization.hpp:16:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:38:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(firstColKnonzeros, -1, (numRows+1)*sizeof(int) ); 
                                   ˜˜˜˜˜˜˜^˜ ˜
CoinSimpFactorization.cpp:381:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(pivotRow_,other.pivotRow_,(2*maximumRows_+numberPivots_)*sizeof(int));
                                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:383:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(elements_,other.elements_,(maximumRows_+numberPivots_)*maximumRows_*sizeof(CoinFactorizationDouble));
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:423:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(denseVector_,other.denseVector_,maximumRows_*sizeof(double));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:428:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(workArea2_,other.workArea2_,maximumRows_*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:433:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(workArea3_,other.workArea3_,maximumRows_*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:438:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(vecLabels_,other.vecLabels_,maximumRows_*sizeof(int));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:443:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(indVector_ ,other.indVector_ , maximumRows_ *sizeof(int ));
                                                ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:449:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(auxVector_ ,other.auxVector_ , maximumRows_ *sizeof(double ));
                                                ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:454:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(auxInd_ , other.auxInd_, maximumRows_ *sizeof(int));
                                          ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:460:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(vecKeep_ ,other.vecKeep_ , maximumRows_ *sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:465:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(indKeep_ , other.indKeep_, maximumRows_ *sizeof(int));
                                            ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:470:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(LrowStarts_ , other.LrowStarts_, maximumRows_ *sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:475:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(LrowLengths_ , other.LrowLengths_ , maximumRows_ *sizeof(int));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:480:40: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(Lrows_ , other.Lrows_, other.LrowCap_*sizeof(double));
                                        ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:485:44: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(LrowInd_, other.LrowInd_,  other.LrowCap_*sizeof(int));
                                            ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:491:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(LcolStarts_ ,other.LcolStarts_ , maximumRows_*sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:496:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(LcolLengths_ , other.LcolLengths_ , maximumRows_ *sizeof(int));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:501:46: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(Lcolumns_ ,other.Lcolumns_ , other.LcolCap_ *sizeof(double));
                                              ˜˜˜˜˜˜^˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:506:44: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(LcolInd_ , other.LcolInd_, other.LcolCap_*sizeof(int));
                                            ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:512:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(UrowStarts_ ,other.UrowStarts_ , maximumRows_ *sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:517:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(UrowLengths_ ,other.UrowLengths_ , maximumRows_ *sizeof(int));
                                                    ^˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:529:40: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(Urows_ ,other.Urows_ , other.UrowMaxCap_ *sizeof(double));
                                        ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:534:42: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(UrowInd_,other.UrowInd_, other.UrowMaxCap_*sizeof(int));
                                          ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:540:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(prevRowInU_ , other.prevRowInU_, maximumRows_*sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:545:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(nextRowInU_, other.nextRowInU_, maximumRows_*sizeof(int));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:551:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(UcolStarts_ , other.UcolStarts_, maximumRows_*sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:556:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(UcolLengths_ , other.UcolLengths_,  maximumRows_*sizeof(int));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:568:46: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(Ucolumns_ ,other.Ucolumns_ , other.UcolMaxCap_*sizeof(double));
                                              ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:573:45: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(UcolInd_ , other.UcolInd_ , other.UcolMaxCap_*sizeof(int));
                                             ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:578:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(prevColInU_ , other.prevColInU_ , maximumRows_*sizeof(int));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:583:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(nextColInU_ ,other.nextColInU_ , maximumRows_*sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:588:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(colSlack_, other.colSlack_, maximumRows_*sizeof(int));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:595:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(invOfPivots_ , other.invOfPivots_,  maximumRows_*sizeof(double));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:601:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(colOfU_ , other.colOfU_, maximumRows_*sizeof(int));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:606:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(colPosition_, other.colPosition_,  maximumRows_*sizeof(int));
                                                    ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:611:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(rowOfU_ , other.rowOfU_, maximumRows_*sizeof(int));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:616:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(rowPosition_ , other.rowPosition_,  maximumRows_*sizeof(int));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:621:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(secRowOfU_ , other.secRowOfU_,  maximumRows_*sizeof(int));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:626:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(secRowPosition_ , other.secRowPosition_, maximumRows_*sizeof(int));
                                                          ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:632:52: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(EtaPosition_ ,other.EtaPosition_ , other.maxEtaRows_ *sizeof(int));
                                                    ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:637:47: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(EtaStarts_, other.EtaStarts_, other.maxEtaRows_*sizeof(int));
                                               ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:642:49: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(EtaLengths_, other.EtaLengths_, other.maxEtaRows_*sizeof(int));
                                                 ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:647:41: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(EtaInd_, other.EtaInd_, other.EtaMaxCap_*sizeof(int));
                                         ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:652:37: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
          memcpy(Eta_ , other.Eta_,  other.EtaMaxCap_*sizeof(double));
                                     ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:769:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(LrowStarts_,-1,numberRows_ * sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:770:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(LrowLengths_,0,numberRows_ * sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:771:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(LcolStarts_,-1,numberRows_ * sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:772:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(LcolLengths_,0,numberRows_ * sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:985:18: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        memset(region,0,numberRows_*sizeof(double));
                        ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1030:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(vec2,0,numberRows_*sizeof(double));
                      ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1140:18: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        memset(region,0,numberRows_*sizeof(double));
                        ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1691:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(aux, Lcolumns_, LcolCap_ * sizeof(double));
                           ^˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:1696:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(iaux, LcolInd_, LcolCap_ * sizeof(int));
                           ^˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:1705:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(iaux, UcolInd_, UcolMaxCap_*sizeof(int) );
                           ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1711:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(aux, Ucolumns_, UcolMaxCap_*sizeof(double) );
                               ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1721:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(iaux, UrowInd_, UrowMaxCap_*sizeof(int) );
                           ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1726:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(aux, Urows_, UrowMaxCap_*sizeof(double) );
                        ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1735:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(UcolLengths_,0,numberColumns_*sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1792:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(LrowLengths_,0,numberRows_*sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1828:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(LrowLengths_,0,numberRows_*sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1901:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(denseVector_,0,numberRows_*sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:1909:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(vecLabels_,0, numberRows_*sizeof(int)); 
                         ^˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:2242:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if ( rhs[ rowOfU_[last] ] ) break;
        ˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinSimpFactorization.cpp:2386:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           sizeNewColumn * sizeof(double) );
           ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2388:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           sizeNewColumn * sizeof(int) );
           ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2495:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(&Urows_[startRow],&workArea2_[0], newEls*sizeof(double) );
                                             ^˜˜˜˜˜˜
CoinSimpFactorization.cpp:2496:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(&UrowInd_[startRow],&indVector_[0], newEls*sizeof(int) );
                                               ^˜˜˜˜˜˜
CoinSimpFactorization.cpp:2509:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(iaux, EtaPosition_, maxEtaRows_ * sizeof(int));
                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2514:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(jaux, EtaStarts_, maxEtaRows_ * sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2519:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(kaux, EtaLengths_, maxEtaRows_ * sizeof(int));
                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2529:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(iaux, EtaInd_, EtaSize_ * sizeof(int));
                              ^˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2534:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(aux, Eta_, EtaSize_ * sizeof(double));
                          ^˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2548:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           numberRows_ * sizeof(int) );
           ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinSimpFactorization.cpp:2550:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           numberRows_ * sizeof(int) );
           ^˜˜˜˜˜˜˜˜˜˜ ˜
84 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinDenseFactorization.lo CoinDenseFactorization.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinDenseFactorization.cpp  -fno-common -DPIC -o CoinDenseFactorization.o
In file included from CoinDenseFactorization.cpp:12:
In file included from ./CoinDenseFactorization.hpp:20:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinDenseFactorization.cpp:12:
In file included from ./CoinDenseFactorization.hpp:20:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinDenseFactorization.cpp:182:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(workArea_,0,numberRows_*sizeof(CoinFactorizationDouble));
                       ^˜˜˜˜˜˜˜˜˜˜˜
CoinDenseFactorization.cpp:378:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(elements,0,numberRows_*sizeof(CoinFactorizationDouble));
                    ^˜˜˜˜˜˜˜˜˜˜˜
11 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinOslFactorization.lo CoinOslFactorization.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinOslFactorization.cpp  -fno-common -DPIC -o CoinOslFactorization.o
In file included from CoinOslFactorization.cpp:10:
In file included from ./CoinOslFactorization.hpp:18:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinOslFactorization.cpp:10:
In file included from ./CoinOslFactorization.hpp:18:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:829:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  return reinterpret_cast<double *>( malloc(number_entries*sizeof(double)));
                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:844:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  return reinterpret_cast<int *>( malloc(number_entries*sizeof(int)));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:859:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  return malloc(number_entries);
         ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:1003:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tempD += ((6*nrowmx +8)*(sizeof(int))/sizeof(double));
             ˜˜˜˜˜˜˜˜˜^˜ ˜
CoinOslFactorization.cpp:1037:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  nDouble = static_cast<int>(sizeof(int)*(nInt+1)/sizeof(double));
                                        ˜ ˜˜˜˜^˜
CoinOslFactorization.cpp:1147:68: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
  memcpy(&fact->nrow,&rhsFact->nrow,((&fact->maxNNetas-&fact->nrow)+1)*
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinOslFactorization.cpp:1188:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(fact->kw1adr,rhsFact->kw1adr,length*sizeof(double));
                                          ^˜˜˜˜˜˜
CoinOslFactorization.cpp:1265:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(hcoli+istart,hcoliR+istart,hinrow[i]*sizeof(int));
                                                ^˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:1281:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(hcoli+istart,hcoliR+istart,hinrow[i]*sizeof(int));
                                                ^˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:1282:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(de2val+istart,de2valR+istart,hinrow[i]*sizeof(double));
                                                  ^˜˜˜˜˜˜˜˜˜
CoinOslFactorization.cpp:1390:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (areaFactor)
  ˜˜  ^˜˜˜˜˜˜˜˜˜
20 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinOslFactorization2.lo CoinOslFactorization2.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinOslFactorization2.cpp  -fno-common -DPIC -o CoinOslFactorization2.o
In file included from CoinOslFactorization2.cpp:15:
In file included from ./CoinOslFactorization.hpp:18:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinOslFactorization2.cpp:15:
In file included from ./CoinOslFactorization.hpp:18:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:436:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (dwork1[i]) {
    ˜˜  ^˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:486:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (dwork1[i]) {
    ˜˜  ^˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:846:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (dv) {
    ˜˜  ^˜
CoinOslFactorization2.cpp:1235:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (dpermu[ipiv])
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:1247:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (dpermu[ipiv]) {
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:1258:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!dpermu[ipiv]) {
            ˜^˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:1268:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (dpermu[ipiv])
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:2245:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (!dwork1[ipiv]) {
                ˜^˜˜˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:2558:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (dluval[kc]) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinOslFactorization2.cpp:2583:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (dluval[kc]) {
            ˜˜  ^˜˜˜˜˜˜˜˜˜
19 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinOslFactorization3.lo CoinOslFactorization3.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinOslFactorization3.cpp  -fno-common -DPIC -o CoinOslFactorization3.o
In file included from CoinOslFactorization3.cpp:8:
In file included from ./CoinOslFactorization.hpp:18:
In file included from ./CoinIndexedVector.hpp:20:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinOslFactorization3.cpp:8:
In file included from ./CoinOslFactorization.hpp:18:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CoinOslFactorization3.cpp:811:
./CoinOslC.h:366:12: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if ( (jj1 == 0)) {
              ˜˜˜˜^˜˜˜
./CoinOslC.h:366:12: note: remove extraneous parentheses around the comparison to silence this warning
        if ( (jj1 == 0)) {
             ˜    ^   ˜
./CoinOslC.h:366:12: note: use '=' to turn this equality comparison into an assignment
        if ( (jj1 == 0)) {
                  ^˜
                  =
./CoinOslC.h:375:12: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if ( (jj2 == 0)) {
              ˜˜˜˜^˜˜˜
./CoinOslC.h:375:12: note: remove extraneous parentheses around the comparison to silence this warning
        if ( (jj2 == 0)) {
             ˜    ^   ˜
./CoinOslC.h:375:12: note: use '=' to turn this equality comparison into an assignment
        if ( (jj2 == 0)) {
                  ^˜
                  =
In file included from CoinOslFactorization3.cpp:1205:
./CoinOslC.h:366:12: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if ( (jj1 == 0)) {
              ˜˜˜˜^˜˜˜
./CoinOslC.h:366:12: note: remove extraneous parentheses around the comparison to silence this warning
        if ( (jj1 == 0)) {
             ˜    ^   ˜
./CoinOslC.h:366:12: note: use '=' to turn this equality comparison into an assignment
        if ( (jj1 == 0)) {
                  ^˜
                  =
./CoinOslC.h:375:12: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if ( (jj2 == 0)) {
              ˜˜˜˜^˜˜˜
./CoinOslC.h:375:12: note: remove extraneous parentheses around the comparison to silence this warning
        if ( (jj2 == 0)) {
             ˜    ^   ˜
./CoinOslC.h:375:12: note: use '=' to turn this equality comparison into an assignment
        if ( (jj2 == 0)) {
                  ^˜
                  =
CoinOslFactorization3.cpp:1221:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
  memset(hpivro+1,0,nrow*sizeof(int));
                    ^˜˜˜˜
CoinOslFactorization3.cpp:1222:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
  memset(hpivco+1,0,nrow*sizeof(int));
                    ^˜˜˜˜
CoinOslFactorization3.cpp:1912:12: warning: implicit conversion from 'long' to 'int' changes value from -9223372036854775807 to 1 [-Wconstant-conversion]
  int last=-LONG_MAX;
      ˜˜˜˜ ^˜˜˜˜˜˜˜˜
CoinOslFactorization3.cpp:2385:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(array,0xff,nSet*sizeof(int));
                      ^˜˜˜˜
CoinOslFactorization3.cpp:2386:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(array+nSet,0,(n2-nSet)*sizeof(int));
                         ˜˜^˜˜˜˜ ˜
CoinOslFactorization3.cpp:2793:63: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
  CoinZeroN(reinterpret_cast<int *>(rlink+1),static_cast<int>(nrow*(sizeof(EKKHlink)/sizeof(int))));
                                                              ^˜˜˜˜
CoinOslFactorization3.cpp:2794:63: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
  CoinZeroN(reinterpret_cast<int *>(clink+1),static_cast<int>(nrow*(sizeof(EKKHlink)/sizeof(int))));
                                                              ^˜˜˜˜
20 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFileIO.lo CoinFileIO.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFileIO.cpp  -fno-common -DPIC -o CoinFileIO.o
In file included from CoinFileIO.cpp:14:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinFileIO.cpp:70:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    return static_cast<int>(fread (buffer, 1, size, f_));
                            ˜˜˜˜˜             ^˜˜˜
CoinFileIO.cpp:413:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    return static_cast<int>(fwrite (buffer, 1, size, f_));
                            ˜˜˜˜˜˜             ^˜˜˜
8 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFinite.lo CoinFinite.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFinite.cpp  -fno-common -DPIC -o CoinFinite.o
CoinFinite.cpp:36:12: warning: 'finite' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations]
    return COIN_C_FINITE(val)!=0;
           ^
./config.h:41:23: note: expanded from macro 'COIN_C_FINITE'
#define COIN_C_FINITE finite
                      ^
/usr/include/math.h:718:12: note: 'finite' has been explicitly marked deprecated here
extern int finite(double) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_9, __IPHONE_NA, __IPHONE_NA);
           ^
1 warning generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinIndexedVector.lo CoinIndexedVector.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinIndexedVector.cpp  -fno-common -DPIC -o CoinIndexedVector.o
In file included from CoinIndexedVector.cpp:16:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinIndexedVector.cpp:17:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:264:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (elements_[index])
  ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:282:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (elements_[index]) {
  ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:412:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (elements_[indexValue]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:743:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!oldValue) {
        ˜^˜˜˜˜˜˜˜
CoinIndexedVector.cpp:790:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!oldValue) {
        ˜^˜˜˜˜˜˜˜
CoinIndexedVector.cpp:837:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (oldValue) {
    ˜˜  ^˜˜˜˜˜˜˜
CoinIndexedVector.cpp:881:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (oldValue) {
    ˜˜  ^˜˜˜˜˜˜˜
CoinIndexedVector.cpp:882:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!value)
          ˜^˜˜˜˜
CoinIndexedVector.cpp:1071:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (elements_[indexValue]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:1227:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (elements_[indexValue]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:1413:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(celem,0,CoinMin(capacity_,tempB.capacity_)*sizeof(double));
                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:1446:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (elem[i]) {
      ˜˜  ^˜˜˜˜˜˜
CoinIndexedVector.cpp:1454:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (celem[i]) {
      ˜˜  ^˜˜˜˜˜˜˜
CoinIndexedVector.cpp:1487:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(temp,0,CoinMax(capacity_,rhs.capacity_)*sizeof(double));
                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:1574:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (elements_[i])
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:1598:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (value) {
    ˜˜  ^˜˜˜˜
CoinIndexedVector.cpp:1694:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (value) {
    ˜˜  ^˜˜˜˜
CoinIndexedVector.cpp:1802:20: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset (array_,0,size_);
  ˜˜˜˜˜˜           ^˜˜˜˜
CoinIndexedVector.cpp:1882:21: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset(array_,0,size);
    ˜˜˜˜˜˜          ^˜˜˜
CoinIndexedVector.cpp:2036:65: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
  memset(startPartition_,0,((&numberPartitions_-startPartition_)+1)*sizeof(int));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinIndexedVector.cpp:2042:83: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
  memcpy(startPartition_,rhs.startPartition_,((&numberPartitions_-startPartition_)+1)*sizeof(int));
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinIndexedVector.cpp:2048:84: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
  memcpy(startPartition_,rhs->startPartition_,((&numberPartitions_-startPartition_)+1)*sizeof(int));
                                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinIndexedVector.cpp:2055:85: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
    memcpy(startPartition_,rhs.startPartition_,((&numberPartitions_-startPartition_)+1)*sizeof(int));
                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinIndexedVector.cpp:2085:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memmove(indices_+n,indices_+start,nThis*sizeof(int));
                                        ^˜˜˜˜˜
CoinIndexedVector.cpp:2086:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memmove(elements_+n,elements_+start,nThis*sizeof(double));
                                          ^˜˜˜˜˜
CoinIndexedVector.cpp:2100:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(elements_+start,0,nThis*sizeof(double));
                                 ^˜˜˜˜˜
CoinIndexedVector.cpp:2113:65: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
  memset(startPartition_,0,((&numberPartitions_-startPartition_)+1)*sizeof(int));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CoinIndexedVector.cpp:2123:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(startPartition_,starts,(number+1)*sizeof(int));
                                   ˜˜˜˜˜˜^˜ ˜
CoinIndexedVector.cpp:2148:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(elements_+startPartition_[i],0,n*sizeof(double));
                                            ^˜
CoinIndexedVector.cpp:2152:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(elements_,0,nElements_*sizeof(double));
                       ^˜˜˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:2166:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(elements_+startPartition_[i],0,n*sizeof(double));
                                          ^˜
CoinIndexedVector.cpp:2178:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(elements_+startPartition_[partition],0,n*sizeof(double));
                                                ^˜
CoinIndexedVector.cpp:2250:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (!tolerance) {
      ˜^˜˜˜˜˜˜˜˜
CoinIndexedVector.cpp:2253:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
CoinIndexedVector.cpp:2262:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
In file included from CoinIndexedVector.cpp:17:
In file included from ./CoinIndexedVector.hpp:19:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
CoinIndexedVector.cpp:947:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstGreater_2<int, double> >' requested here
  CoinSort_2(indices_, indices_ + nElements_, elements,
  ^
In file included from CoinIndexedVector.cpp:17:
In file included from ./CoinIndexedVector.hpp:19:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
CoinIndexedVector.cpp:966:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(elements, elements + nElements_, indices_,
  ^
In file included from CoinIndexedVector.cpp:16:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinIndexedVector.cpp:2283:25: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  double * tempElements=CoinCopyOfArray(elements_,capacity_);
                        ^
In file included from CoinIndexedVector.cpp:16:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinIndexedVector.cpp:2284:21: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
  int * tempIndices=CoinCopyOfArray(indices_,capacity_);
                    ^
48 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinLpIO.lo CoinLpIO.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinLpIO.cpp  -fno-common -DPIC -o CoinLpIO.o
In file included from CoinLpIO.cpp:24:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinLpIO.cpp:26:
In file included from ./CoinLpIO.hpp:21:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinLpIO.cpp:160:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       rowlower_ = reinterpret_cast<double*> (malloc(numberRows_ * sizeof(double)));
                                                     ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:161:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       rowupper_ = reinterpret_cast<double*> (malloc(numberRows_ * sizeof(double)));
                                                     ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:162:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(rowlower_, rhs.rowlower_, numberRows_ * sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:163:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(rowupper_, rhs.rowupper_, numberRows_ * sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:164:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       rowrange_ = reinterpret_cast<double *> (malloc(numberRows_*sizeof(double)));
                                                      ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:165:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       rowsense_ = reinterpret_cast<char *> (malloc(numberRows_*sizeof(char)));
                                                    ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:166:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       rhs_ = reinterpret_cast<double *> (malloc(numberRows_*sizeof(double)));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:167:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(rowrange_,rhs.getRowRange(),numberRows_*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:168:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(rowsense_,rhs.getRowSense(),numberRows_*sizeof(char));
                                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:169:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(rhs_,rhs.getRightHandSide(),numberRows_*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:173:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       collower_ = reinterpret_cast<double*> (malloc(numberColumns_ * sizeof(double)));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:174:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       colupper_ = reinterpret_cast<double*> (malloc(numberColumns_ * sizeof(double)));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:175:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(collower_, rhs.collower_, numberColumns_ * sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:176:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(colupper_, rhs.colupper_, numberColumns_ * sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:178:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          objective_[j] = reinterpret_cast<double*> (malloc(numberColumns_ * sizeof(double)));
                                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:179:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(objective_[j], rhs.objective_[j], numberColumns_ * sizeof(double));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:184:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       integerType_ = reinterpret_cast<char*> (malloc (numberColumns_ * sizeof(char)));
                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:185:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(integerType_, rhs.integerType_, numberColumns_ * sizeof(char));
                                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:212:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          names_[section] = reinterpret_cast<char**> (malloc(maxHash_[section] *
                                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:222:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          std::memcpy(hash_[section], rhs.hash_[section], maxHash_[section]*sizeof(CoinHashLink));
                                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:426:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowsense_ = reinterpret_cast<char *> (malloc(nr*sizeof(char)));
                                                 ^˜˜
CoinLpIO.cpp:442:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rhs_ = reinterpret_cast<double *> (malloc(nr*sizeof(double)));
                                              ^˜˜
CoinLpIO.cpp:459:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowrange_ = reinterpret_cast<double *> (malloc(nr*sizeof(double)));
                                                   ^˜˜
CoinLpIO.cpp:773:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowlower_ = reinterpret_cast<double *> (malloc (numberRows_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:774:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowupper_ = reinterpret_cast<double *> (malloc (numberRows_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:775:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  collower_ = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:776:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  colupper_ = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:783:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     objective_[j] = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:788:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    integerType_ = reinterpret_cast<char *> (malloc (numberColumns_ * sizeof(char)));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:807:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  char **defaultRowNames = reinterpret_cast<char **> (malloc ((nrow+1) * sizeof(char *)));
                                                               ˜˜˜˜^˜  ˜
CoinLpIO.cpp:832:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  char **defaultColNames = reinterpret_cast<char **> (malloc (ncol * sizeof(char *)));
                                                              ^˜˜˜ ˜
CoinLpIO.cpp:1035:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     prowNames = reinterpret_cast<char **> (malloc ((nrow+1) * sizeof(char *)));
                                                     ˜˜˜˜^˜  ˜
CoinLpIO.cpp:1047:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     pcolNames = reinterpret_cast<char **> (malloc (ncol * sizeof(char *)));
                                                    ^˜˜˜ ˜
CoinLpIO.cpp:1737:74: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *colNames = reinterpret_cast<char **> (realloc ((*colNames), (*maxcoeff+1) * sizeof(char *)));
                                                                ˜˜˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1738:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *coeff = reinterpret_cast<double *> (realloc ((*coeff), (*maxcoeff+1) * sizeof(double)));
                                                           ˜˜˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1748:72: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *rowNames = reinterpret_cast<char **> (realloc ((*rowNames), (*maxrow+1) * sizeof(char *)));
                                                                ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1749:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *start = reinterpret_cast<int *> (realloc ((*start), (*maxrow+1) * sizeof(int)));
                                                        ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1750:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *rhs = reinterpret_cast<double *> (realloc ((*rhs), (*maxrow+1) * sizeof(double)));
                                                       ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1751:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *rowlow = reinterpret_cast<double *> (realloc ((*rowlow), (*maxrow+1) * sizeof(double)));
                                                             ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1752:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *rowup = reinterpret_cast<double *> (realloc ((*rowup), (*maxrow+1) * sizeof(double)));
                                                           ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1761:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *collow = reinterpret_cast<double *> (realloc ((*collow), (*maxcol+1) * sizeof(double)));
                                                             ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1762:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *colup = reinterpret_cast<double *> (realloc ((*colup), (*maxcol+1) * sizeof(double)));
                                                           ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1763:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  *is_int = reinterpret_cast<char *> (realloc ((*is_int), (*maxcol+1) * sizeof(char)));
                                                           ˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1916:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxcoeff+1) * sizeof(char *)));
               ˜˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1918:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxcoeff+1) * sizeof(double)));
               ˜˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1920:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxrow+MAX_OBJECTIVES) * sizeof(char *)));
               ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜  ˜
CoinLpIO.cpp:1922:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxrow+MAX_OBJECTIVES) * sizeof(int)));
               ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜  ˜
CoinLpIO.cpp:1924:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxrow+1) * sizeof(double)));
               ˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1926:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxrow+1) * sizeof(double)));
               ˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:1928:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (malloc ((maxrow+1) * sizeof(double)));
               ˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:2001:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double *collow = reinterpret_cast<double *> (malloc ((maxcol+1) * sizeof(double)));
                                                        ˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:2002:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double *colup = reinterpret_cast<double *> (malloc ((maxcol+1) * sizeof(double)));
                                                       ˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:2003:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  char *is_int = reinterpret_cast<char *> (malloc ((maxcol+1) * sizeof(char)));
                                                    ˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:2331:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      memcpy(tempD,weights,numberEntries*sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:2332:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      memcpy(tempI,which,numberEntries*sizeof(int));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:2388:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(temp,set,numberSets_*sizeof(CoinSet *));
                                  ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:2409:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(set_,set,numberSets_*sizeof(CoinSet *));
                          ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:2428:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int *ind = reinterpret_cast<int *> (malloc ((maxcoeff+1) * sizeof(int)));
                                               ˜˜˜˜˜˜˜˜^˜  ˜
CoinLpIO.cpp:2451:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     obj[j] = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:2452:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(obj[j], 0, numberColumns_ * sizeof(double));
                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinLpIO.cpp:2264:18: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
                    int length=strlen(buff);
                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:2316:18: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
                    int length=strlen(next+1);
                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinLpIO.cpp:2659:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  names_[section] = reinterpret_cast<char **> (malloc(maxhash * sizeof(char *)));
                                                      ^˜˜˜˜˜˜ ˜
In file included from CoinLpIO.cpp:29:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinLpIO.cpp:2376:8: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
              CoinSort_2(weights,weights+numberEntries,which);
              ^
74 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinMessage.lo CoinMessage.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinMessage.cpp  -fno-common -DPIC -o CoinMessage.o
In file included from CoinMessage.cpp:12:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinMessageHandler.lo CoinMessageHandler.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinMessageHandler.cpp  -fno-common -DPIC -o CoinMessageHandler.o
In file included from CoinMessageHandler.cpp:6:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinMessageHandler.cpp:7:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinMessageHandler.cpp:313:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memcpy(temp,&message,length);
        ˜˜˜˜˜˜               ^˜˜˜˜˜
CoinMessageHandler.cpp:422:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  g_precision_ = new_precision ;
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinMessageHandler.cpp:428:48: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    char c = static_cast<char>(new_precision / base);
                                             ˜ ^˜˜˜
CoinMessageHandler.cpp:429:37: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    new_precision = new_precision % base;
                                  ˜ ^˜˜˜
CoinMessageHandler.cpp:740:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          strncpy(messageOut_,start,numberToCopy);
          ˜˜˜˜˜˜˜                   ^˜˜˜˜˜˜˜˜˜˜˜
CoinMessageHandler.cpp:823:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
            sprintf(messageOut_,format_+2);
                                ^˜˜˜˜˜˜˜˜
In file included from CoinMessageHandler.cpp:7:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinMessageHandler.cpp:118:19: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
    char * temp = CoinCopyOfArray(reinterpret_cast<char *> (rhs.message_),lengthMessages_);
                  ^
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinModel.lo CoinModel.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinModel.cpp  -fno-common -DPIC -o CoinModel.o
In file included from CoinModel.cpp:7:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinModel.cpp:8:
In file included from ./CoinModel.hpp:9:
./CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
./CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
In file included from CoinModel.cpp:8:
In file included from ./CoinModel.hpp:10:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinModel.cpp:410:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (value&&objRow<0) {
                ^˜˜˜˜˜˜
CoinModel.cpp:429:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (value) {
              ˜˜  ^˜˜˜˜
CoinModel.cpp:1609:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(newRow,0,numberRows_*sizeof(int));
                  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:1715:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(newColumn,0,numberColumns_*sizeof(int));
                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:1872:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
CoinModel.cpp:1904:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(startPositive,0,numberColumns_*sizeof(int));
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:1905:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(startNegative,0,numberColumns_*sizeof(int));
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:1926:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
CoinModel.cpp:3513:6: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (linearRow[i])
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:3520:6: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (linearRow[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:3543:11: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (linearRow[i])
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:3561:6: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (linearRow[i])
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:3568:6: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (linearRow[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:3591:11: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (linearRow[i])
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:4095:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(rowType_,row,numberRows_*sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜˜
CoinModel.cpp:4098:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(columnType_,column,numberColumns_*sizeof(int));
                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CoinModel.cpp:7:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinModel.cpp:505:15: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  rowLower_ = CoinCopyOfArray(rowLower,numberRows_);
              ^
In file included from CoinModel.cpp:7:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinModel.cpp:541:14: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
  rowType_ = CoinCopyOfArray(rhs.rowType_,maximumRows_);
             ^
In file included from CoinModel.cpp:7:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinModel.cpp:578:15: note: in instantiation of function template specialization 'CoinCopyOfArray<CoinModelTriple>' requested here
  elements_ = CoinCopyOfArray(rhs.elements_,maximumElements_);
              ^
In file included from CoinModel.cpp:10:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinModel.cpp:751:7: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
      CoinSort_2(sortIndices_,sortIndices_+numberInRow,sortElements_);
      ^
32 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinStructuredModel.lo CoinStructuredModel.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinStructuredModel.cpp  -fno-common -DPIC -o CoinStructuredModel.o
In file included from CoinStructuredModel.cpp:8:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinStructuredModel.cpp:9:
In file included from ./CoinStructuredModel.hpp:9:
In file included from ./CoinModel.hpp:9:
./CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
./CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
In file included from CoinStructuredModel.cpp:9:
In file included from ./CoinStructuredModel.hpp:9:
In file included from ./CoinModel.hpp:10:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinStructuredModel.cpp:9:
./CoinStructuredModel.hpp:138:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return rowBlockNames_[i];}
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
./CoinStructuredModel.hpp:141:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { rowBlockNames_[i] = name;}
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
./CoinStructuredModel.hpp:148:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return columnBlockNames_[i];}
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
./CoinStructuredModel.hpp:151:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { columnBlockNames_[i] = name;}
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
CoinStructuredModel.cpp:224:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (name==rowBlockNames_[iRowBlock])
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:240:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (name==rowBlockNames_[iRowBlock])
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:253:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (name==columnBlockNames_[iColumnBlock])
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:269:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (name==columnBlockNames_[iColumnBlock])
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:418:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             nRows*sizeof(double));
             ^˜˜˜˜˜
CoinStructuredModel.cpp:420:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             nRows*sizeof(double));
             ^˜˜˜˜˜
CoinStructuredModel.cpp:429:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             nColumns*sizeof(double));
             ^˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:431:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             nColumns*sizeof(double));
             ^˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:433:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             nColumns*sizeof(double));
             ^˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:439:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             nColumns*sizeof(int));
             ^˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:696:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(temp,blocks_,numberElementBlocks_*sizeof(CoinBaseModel *));
                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:700:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(temp2,blockType_,numberElementBlocks_*sizeof(CoinModelBlockInfo));
                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinStructuredModel.cpp:706:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(temp,coinModelBlocks_,numberElementBlocks_*sizeof(CoinModel *));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CoinStructuredModel.cpp:8:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinStructuredModel.cpp:75:15: note: in instantiation of function template specialization 'CoinCopyOfArray<CoinBaseModel *>' requested here
    blocks_ = CoinCopyOfArray(rhs.blocks_,maximumElementBlocks_);
              ^
In file included from CoinStructuredModel.cpp:8:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinStructuredModel.cpp:78:18: note: in instantiation of function template specialization 'CoinCopyOfArray<CoinModelInfo2>' requested here
    blockType_ = CoinCopyOfArray(rhs.blockType_,maximumElementBlocks_);
                 ^
In file included from CoinStructuredModel.cpp:8:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinStructuredModel.cpp:80:26: note: in instantiation of function template specialization 'CoinCopyOfArray<CoinModel *>' requested here
      coinModelBlocks_ = CoinCopyOfArray(rhs.coinModelBlocks_,
                         ^
In file included from CoinStructuredModel.cpp:10:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, int, CoinFirstLess_2<int, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinStructuredModel.cpp:819:4: note: in instantiation of function template specialization 'CoinSort_2<int, int>' requested here
          CoinSort_2(rowBlock,rowBlock+numberRows,stack);
          ^
33 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinModelUseful.lo CoinModelUseful.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinModelUseful.cpp  -fno-common -DPIC -o CoinModelUseful.o
In file included from CoinModelUseful.cpp:16:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinModelUseful.cpp:18:
./CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
./CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
CoinModelUseful.cpp:724:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[0] * tempChar[0];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:725:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[1] * tempChar[1];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:726:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[2] * tempChar[2];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:727:19: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult[3] * tempChar[3];
      ˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:729:22: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[0+8] * tempChar[0];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:730:22: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[1+8] * tempChar[1];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:731:22: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[2+8] * tempChar[2];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:732:22: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n += mmult2[3+8] * tempChar[3];
      ˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:733:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    return n % (maximumItems_<<1);
    ˜˜˜˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinModelUseful.cpp:733:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    return n % (maximumItems_<<1);
             ˜  ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
CoinModelUseful.cpp:1428:17: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(mark,0,maximumElements_);
  ˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CoinModelUseful.cpp:16:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinModelUseful.cpp:119:13: note: in instantiation of function template specialization 'CoinCopyOfArray<CoinModelHashLink>' requested here
    hash_ = CoinCopyOfArray(rhs.hash_,4*maximumItems_);
            ^
In file included from CoinModelUseful.cpp:16:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinModelUseful.cpp:788:17: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    previous_ = CoinCopyOfArray(rhs.previous_,maximumElements_);
                ^
21 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinModelUseful2.lo CoinModelUseful2.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinModelUseful2.cpp  -fno-common -DPIC -o CoinModelUseful2.o
In file included from CoinModelUseful2.cpp:74:
In file included from ./CoinModel.hpp:9:
./CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
./CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
In file included from CoinModelUseful2.cpp:74:
In file included from ./CoinModel.hpp:10:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinModelUseful2.cpp:75:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinModelUseful2.cpp:857:76: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
             length = 40, symbuf = reinterpret_cast<char *>(malloc (length + 1));
                                                            ˜˜˜˜˜˜  ˜˜˜˜˜˜˜^˜˜
CoinModelUseful2.cpp:866:79: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                   symbuf = reinterpret_cast<char *> (realloc (symbuf, length + 1));
                                                      ˜˜˜˜˜˜˜          ˜˜˜˜˜˜˜^˜˜
CoinModelUseful2.cpp:997:38: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      YYSIZE_T yysize = yyssp - yyss + 1;
               ˜˜˜˜˜˜   ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
15 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinMpsIO.lo CoinMpsIO.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinMpsIO.cpp  -fno-common -DPIC -o CoinMpsIO.o
In file included from CoinMpsIO.cpp:21:
In file included from ./CoinMpsIO.hpp:19:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinMpsIO.cpp:23:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinMpsIO.cpp:24:
In file included from ./CoinModel.hpp:9:
./CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
./CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
CoinMpsIO.cpp:302:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memcpy(card_+82,card_,length);
      ˜˜˜˜˜˜                ^˜˜˜˜˜
CoinMpsIO.cpp:564:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
              if ( !strncmp ( next, mpsTypes[i], nchar ) ) {
                    ˜˜˜˜˜˜˜                      ^˜˜˜˜
CoinMpsIO.cpp:985:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            strncpy(columnName_,position_,length);
            ˜˜˜˜˜˜˜                       ^˜˜˜˜˜
CoinMpsIO.cpp:1018:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            strncpy(rowName_,position_,length);
            ˜˜˜˜˜˜˜                    ^˜˜˜˜˜
CoinMpsIO.cpp:1091:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            strncpy(rowName_,position_,length);
            ˜˜˜˜˜˜˜                    ^˜˜˜˜˜
CoinMpsIO.cpp:1117:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
              strncpy(columnName_,position_,length);
              ˜˜˜˜˜˜˜                       ^˜˜˜˜˜
CoinMpsIO.cpp:1148:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          strncpy(rowName_,position_,length);
          ˜˜˜˜˜˜˜                    ^˜˜˜˜˜
CoinMpsIO.cpp:1670:50: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
      reinterpret_cast< COINMpsType *> (malloc ( maxRows * sizeof ( COINMpsType )));
                                                 ^˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1671:58: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
    char **rowName = reinterpret_cast<char **> (malloc ( maxRows * sizeof ( char * )));
                                                         ^˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1678:43: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
      reinterpret_cast<char **> (malloc ( maxFreeRows * sizeof ( char * )));
                                          ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1693:12: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
                                              maxFreeRows * sizeof ( char * )));
                                              ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1707:14: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
                                                       maxRows * sizeof ( COINMpsType )));
                                                       ^˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1710:52: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
            reinterpret_cast<char **> (realloc ( rowName, maxRows * sizeof ( char * )));
                                                          ^˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1741:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                                   numberRows_ * sizeof ( COINMpsType )));
                                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1748:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                            ( numberRows_ + 1 +
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^
CoinMpsIO.cpp:1754:7: warning: implicit conversion changes signedness: 'COINRowIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
             numberOtherFreeRows * sizeof ( char * ) );
             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1765:17: warning: implicit conversion changes signedness: 'COINColumnIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
      (malloc ( maxColumns * sizeof ( COINMpsType )));
                ^˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1766:61: warning: implicit conversion changes signedness: 'COINColumnIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
    char **columnName = reinterpret_cast<char **> (malloc ( maxColumns * sizeof ( char * )));
                                                            ^˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1768:55: warning: implicit conversion changes signedness: 'COINColumnIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
    objective_ = reinterpret_cast<double *> (malloc ( maxColumns * sizeof ( double )));
                                                      ^˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1770:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (malloc ( ( maxColumns + 1 ) * sizeof ( CoinBigIndex )));
                  ˜˜˜˜˜˜˜˜˜˜˜^˜˜   ˜
CoinMpsIO.cpp:1772:17: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
      (malloc ( maxElements * sizeof ( COINRowIndex )));
                ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1774:44: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
      reinterpret_cast<double *> (malloc ( maxElements * sizeof ( double )));
                                           ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1818:31: warning: implicit conversion changes signedness: 'COINColumnIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
              (realloc ( columnType, maxColumns * sizeof ( COINMpsType )));
                                     ^˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1820:31: warning: implicit conversion changes signedness: 'COINColumnIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
              (realloc ( columnName, maxColumns * sizeof ( char * )));
                                     ^˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1823:31: warning: implicit conversion changes signedness: 'COINColumnIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
              (realloc ( objective_, maxColumns * sizeof ( double )));
                                     ^˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1826:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                         ( maxColumns + 1 ) * sizeof ( CoinBigIndex )));
                           ˜˜˜˜˜˜˜˜˜˜˜^˜˜   ˜
CoinMpsIO.cpp:1848:24: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
              (realloc ( row, maxElements * sizeof ( COINRowIndex )));
                              ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1850:28: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
              (realloc ( element, maxElements * sizeof ( double )));
                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1971:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                                   numberColumns_ * sizeof ( COINMpsType )));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1974:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        reinterpret_cast<char **> (realloc ( columnName, numberColumns_ * sizeof ( char * )));
                                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1976:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        (realloc ( objective_, numberColumns_ * sizeof ( double )));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1988:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (realloc ( start, ( numberColumns_ + 1 ) * sizeof ( CoinBigIndex )));
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜   ˜
CoinMpsIO.cpp:1991:18: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
        (realloc ( row, numberElements_ * sizeof ( COINRowIndex )));
                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:1993:22: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
        (realloc ( element, numberElements_ * sizeof ( double )));
                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2001:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rowlower_ = reinterpret_cast<double *> (malloc ( numberRows_ * sizeof ( double )));
                                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2002:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rowupper_ = reinterpret_cast<double *> (malloc ( numberRows_ * sizeof ( double )));
                                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2248:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      collower_ = reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2249:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      colupper_ = reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2260:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      integerType_ = reinterpret_cast<char *> (malloc (numberColumns_*sizeof(char)));
                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:2627:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(sets,setsA,numberSets*sizeof(CoinSet **));
                          ^˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:2694:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowlower_ = reinterpret_cast<double *> (malloc ( numberRows_ * sizeof ( double )));
                                                     ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2695:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowupper_ = reinterpret_cast<double *> (malloc ( numberRows_ * sizeof ( double )));
                                                     ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2706:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    collower_ = reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2707:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    colupper_ = reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2708:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    objective_= reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2709:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    start = reinterpret_cast<CoinBigIndex *> (malloc ((numberColumns_ + 1) *
                                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜  ˜
CoinMpsIO.cpp:2711:53: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
    row = reinterpret_cast<COINRowIndex *> (malloc (numberElements_ * sizeof (COINRowIndex)));
                                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:2712:51: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
    element = reinterpret_cast<double *> (malloc (numberElements_ * sizeof (double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3108:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowlower_ = reinterpret_cast<double *> (malloc ( numberRows_ * sizeof ( double )));
                                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3109:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowupper_ = reinterpret_cast<double *> (malloc ( numberRows_ * sizeof ( double )));
                                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3110:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  collower_ = reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3111:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  colupper_ = reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3112:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  objective_= reinterpret_cast<double *> (malloc ( numberColumns_ * sizeof ( double )));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3113:80: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  CoinBigIndex *start = reinterpret_cast<CoinBigIndex *> (malloc ((numberRows_ + 1) *
                                                                   ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜  ˜
CoinMpsIO.cpp:3115:72: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
  COINColumnIndex * column = reinterpret_cast<COINRowIndex *> (malloc (numberElements_ * sizeof (COINRowIndex)));
                                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3116:57: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'unsigned long' [-Wsign-conversion]
  double *element = reinterpret_cast<double *> (malloc (numberElements_ * sizeof (double)));
                                                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3118:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    reinterpret_cast<COINMpsType *> (malloc ( numberRows_ * sizeof ( COINMpsType )));
                                              ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3119:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  char **rowName = reinterpret_cast<char **> (malloc ( numberRows_ * sizeof ( char * )));
                                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3121:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (malloc ( numberColumns_ * sizeof ( COINMpsType )));
              ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3122:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  char **columnName = reinterpret_cast<char **> (malloc ( numberColumns_ * sizeof ( char * )));
                                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3158:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  integerType_ = reinterpret_cast<char *> (malloc (numberColumns_*sizeof(char)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:3159:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(integerType_,0,numberColumns_);
  ˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:3291:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value&&value!=1.0) 
              ^˜˜˜˜˜˜
CoinMpsIO.cpp:3583:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    names_[0] = reinterpret_cast<char **> (malloc(numberRows_ * sizeof(char *)));
                                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3584:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    names_[1] = reinterpret_cast<char **> (malloc (numberColumns_ * sizeof(char *)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:3589:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      rowNames[i] = rownames[i].c_str();
                    ˜˜˜˜˜˜˜˜ ^
CoinMpsIO.cpp:3592:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      columnNames[i] = colnames[i].c_str();
                       ˜˜˜˜˜˜˜˜ ^
CoinMpsIO.cpp:4003:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset(used,0,largest);
    ˜˜˜˜˜˜        ^˜˜˜˜˜˜
CoinMpsIO.cpp:4113:12: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
         length = static_cast<int>(strlen(rowNames[i]));
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4120:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
            length = static_cast<int>(strlen(columnNames[i]));
                   ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4177:35: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   memcpy( sense , getRowSense(), numberRows_);
   ˜˜˜˜˜˜                         ^˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4229:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   memset(stringRow,0,numberRows_+1);
   ˜˜˜˜˜˜             ˜˜˜˜˜˜˜˜˜˜˜^˜
CoinMpsIO.cpp:4251:10: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
     if (objective[i]||lengths[i]||i==nextColumnString) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4253:12: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
       if (columnLower[i]||columnUpper[i]<largeValue||isInteger(i))
           ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4256:12: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
       if (objective[i]) {
       ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4288:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
         if (value&&!stringRow[jRow]) {
             ^˜˜˜˜˜˜
CoinMpsIO.cpp:4346:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
   if (objectiveOffset_ ) {
   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4514:7: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
         if (objective[i]||lengths[i]) {
             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4516:10: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
            if (columnLower[i]||columnUpper[i]<largeValue||isInteger(i)) {
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4550:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (lowerValue) {
                  ˜˜  ^˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:4820:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowsense_ = reinterpret_cast<char *> (malloc(nr*sizeof(char)));
                                                 ^˜˜
CoinMpsIO.cpp:4840:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rhs_ = reinterpret_cast<double *> (malloc(nr*sizeof(double)));
                                              ^˜˜
CoinMpsIO.cpp:4862:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowrange_ = reinterpret_cast<double *> (malloc(nr*sizeof(double)));
                                                   ^˜˜
CoinMpsIO.cpp:4924:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowlower_ = reinterpret_cast<double *> (malloc (numberRows_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4925:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowupper_ = reinterpret_cast<double *> (malloc (numberRows_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4926:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  collower_ = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4927:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  colupper_ = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4928:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  objective_ = reinterpret_cast<double *> (malloc (numberColumns_ * sizeof(double)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4935:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    integerType_ = reinterpret_cast<char *> (malloc (numberColumns_ * sizeof(char)));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4957:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  names_[0] = reinterpret_cast<char **> (malloc(numberRows_ * sizeof(char *)));
                                                ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:4958:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  names_[1] = reinterpret_cast<char **> (malloc (numberColumns_ * sizeof(char *)));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5015:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  names_[0] = reinterpret_cast<char **> (malloc(numberRows_ * sizeof(char *)));
                                                ^˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5016:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  names_[1] = reinterpret_cast<char **> (malloc (numberColumns_ * sizeof(char *)));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5022:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
       rowNames[i] = CoinStrdup(rownames[i].c_str());
                                ˜˜˜˜˜˜˜˜ ^
CoinMpsIO.cpp:5032:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
       columnNames[i] = CoinStrdup(colnames[i].c_str());
                                   ˜˜˜˜˜˜˜˜ ^
CoinMpsIO.cpp:5157:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      integerType_ = reinterpret_cast<char *> (malloc (numberColumns_ * sizeof(char)));
                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5158:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memcpy(integerType_,integerType,numberColumns_);
    ˜˜˜˜˜˜                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5376:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowlower_ = reinterpret_cast<double *> (malloc(numberRows_*sizeof(double)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5377:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowupper_ = reinterpret_cast<double *> (malloc(numberRows_*sizeof(double)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5378:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(rowlower_,rhs.rowlower_,numberRows_*sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5379:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(rowupper_,rhs.rowupper_,numberRows_*sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5382:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    collower_ = reinterpret_cast<double *> (malloc(numberColumns_*sizeof(double)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5383:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    colupper_ = reinterpret_cast<double *> (malloc(numberColumns_*sizeof(double)));
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5384:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    objective_ = reinterpret_cast<double *> (malloc(numberColumns_*sizeof(double)));
                                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5385:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(collower_,rhs.collower_,numberColumns_*sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5386:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(colupper_,rhs.colupper_,numberColumns_*sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5387:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(objective_,rhs.objective_,numberColumns_*sizeof(double));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5390:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    integerType_ = reinterpret_cast<char *> (malloc (numberColumns_*sizeof(char)));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5391:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(integerType_,rhs.integerType_,numberColumns_*sizeof(char));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5415:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      names_[section] = reinterpret_cast<char **> (malloc(numberHash_[section]*
                                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5605:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int * column = reinterpret_cast<int *> (malloc(maximumNonZeros*sizeof(int)));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5606:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int * column2Temp = reinterpret_cast<int *> (malloc(maximumNonZeros*sizeof(int)));
                                                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5607:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double * elementTemp = reinterpret_cast<double *> (malloc(maximumNonZeros*sizeof(double)));
                                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5619:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (realloc ( column, maximumNonZeros * sizeof ( COINColumnIndex )));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5621:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (realloc ( column2Temp, maximumNonZeros * sizeof ( COINColumnIndex )));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5623:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (realloc ( elementTemp, maximumNonZeros * sizeof ( double )));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CoinMpsIO.cpp:5685:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count,0,numberColumns_*sizeof(int));
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:5766:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
CoinMpsIO.cpp:5949:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  char * line = reinterpret_cast<char *> (malloc(n+1));
                                          ˜˜˜˜˜˜ ˜^˜
CoinMpsIO.cpp:6051:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(which_,which,numberEntries_*sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinMpsIO.cpp:6100:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(weights_,weights,numberEntries_*sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CoinMpsIO.cpp:25:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinMpsIO.cpp:4284:8: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
       CoinSort_2(tempRow,tempRow+numberEntries,tempValue);
       ^
In file included from CoinMpsIO.cpp:23:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinMpsIO.cpp:6068:12: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
  which_ = CoinCopyOfArray(rhs.which_,numberEntries_);
           ^
In file included from CoinMpsIO.cpp:23:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinMpsIO.cpp:6069:14: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  weights_ = CoinCopyOfArray(rhs.weights_,numberEntries_);
             ^
136 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPackedMatrix.lo CoinPackedMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPackedMatrix.cpp  -fno-common -DPIC -o CoinPackedMatrix.o
In file included from CoinPackedMatrix.cpp:17:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPackedMatrix.cpp:413:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (newElement||keepZero) {
              ^˜˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:428:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (j==end&&(newElement||keepZero)) {
                   ^˜˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:432:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           memset(addedEntries, 0, majorDim_ * sizeof(int));
                                   ^˜˜˜˜˜˜˜˜ ˜
CoinPackedMatrix.cpp:538:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(index_+k,eliminatedIndex,kbad*sizeof(int));
                                      ^˜˜˜˜
CoinPackedMatrix.cpp:539:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(element_+k,eliminatedElement,kbad*sizeof(double));
                                          ^˜˜˜˜
CoinPackedMatrix.cpp:1345:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(addedEntries, 0, majorDim_ * sizeof(int));
                            ^˜˜˜˜˜˜˜˜ ˜
CoinPackedMatrix.cpp:1635:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
   if (!extraGap_&&!extraMajor_&&false) {
       ˜^˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:1635:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
   if (!extraGap_&&!extraMajor_&&false) {
                   ˜^˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:1638:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(keep,1,majorDim_);
     ˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:1718:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(length_,0,majorDim_*sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:1719:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(start_,0,(majorDim_+1)*sizeof(CoinBigIndex ));
                      ˜˜˜˜˜˜˜˜˜^˜ ˜
CoinPackedMatrix.cpp:1773:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (!extraGap_) {
      ˜^˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:1821:17: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
   memset(y, 0, minorDim_ * sizeof(double));
                ^˜˜˜˜˜˜˜˜ ˜
CoinPackedMatrix.cpp:1837:17: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
   memset(y, 0, minorDim_ * sizeof(double));
                ^˜˜˜˜˜˜˜˜ ˜
CoinPackedMatrix.cpp:1854:17: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
   memset(y, 0, majorDim_ * sizeof(double));
                ^˜˜˜˜˜˜˜˜ ˜
CoinPackedMatrix.cpp:1869:17: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
   memset(y, 0, majorDim_ * sizeof(double));
                ^˜˜˜˜˜˜˜˜ ˜
CoinPackedMatrix.cpp:2190:22: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
  if (!hasGaps&&!rhs.extraMajor_) {
                ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3004:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (diff) {
        ˜˜  ^˜˜˜
CoinPackedMatrix.cpp:3099:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!extraGap_&&!extraMajor_&&numberOther<=0&&!hasGaps()) {
        ˜^˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3099:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!extraGap_&&!extraMajor_&&numberOther<=0&&!hasGaps()) {
                    ˜^˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3155:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(which,0,numberOther);
      ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3182:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!extraGap_) {
          ˜^˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3213:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(which,0,numberOther);
      ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3242:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!extraGap_) {
          ˜^˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3311:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset(which,0,numberOther);
    ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
CoinPackedMatrix.cpp:3457:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!slack) {
        ˜^˜˜˜˜
In file included from CoinPackedMatrix.cpp:17:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPackedMatrix.cpp:728:16: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
  int * temp = CoinCopyOfArray(length_,majorDim_);
               ^
In file included from CoinPackedMatrix.cpp:17:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPackedMatrix.cpp:737:20: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  double * temp3 = CoinCopyOfArray(element_,size_);
                   ^
In file included from CoinPackedMatrix.cpp:16:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
CoinPackedMatrix.cpp:2121:7: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
      CoinSort_2(rowIndices+start,rowIndices+end,elements+start,CoinFirstLess_2<int, double>());
      ^
35 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPackedVector.lo CoinPackedVector.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPackedVector.cpp  -fno-common -DPIC -o CoinPackedVector.o
In file included from CoinPackedVector.cpp:13:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPackedVector.cpp:168:11: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (elems[i]) {
      ˜˜  ^˜˜˜˜˜˜˜
In file included from CoinPackedVector.cpp:14:
In file included from ./CoinPackedVector.hpp:13:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
./CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CoinPackedVector.cpp:14:
In file included from ./CoinPackedVector.hpp:13:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
./CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
9 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPackedVectorBase.lo CoinPackedVectorBase.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPackedVectorBase.cpp  -fno-common -DPIC -o CoinPackedVectorBase.o
In file included from CoinPackedVectorBase.cpp:10:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPackedVectorBase.cpp:166:49: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
  itmp = memcmp(getIndices(), rhs.getIndices(), size * sizeof(int));
                                                ^˜˜˜ ˜
CoinPackedVectorBase.cpp:170:51: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
  return memcmp(getElements(), rhs.getElements(), size * sizeof(double));
                                                  ^˜˜˜ ˜
8 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinParam.lo CoinParam.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinParam.cpp  -fno-common -DPIC -o CoinParam.o
CoinParam.cpp:442:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
              << definedKwds_[currentKwd_] << " to "
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
CoinParam.cpp:443:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
              << definedKwds_[value] << std::endl ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
CoinParam.cpp:455:24: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  return (definedKwds_[currentKwd_]) ;
          ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
CoinParam.cpp:475:12: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    if (it%maxAcross == 0)
          ˜^˜˜˜˜˜˜˜˜
CoinParam.cpp:482:38: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  std::string current = definedKwds_[currentKwd_] ;
                        ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
5 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinParamUtils.lo CoinParamUtils.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinParamUtils.cpp  -fno-common -DPIC -o CoinParamUtils.o
CoinParamUtils.cpp:230:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
              (*pfx) = field.substr(0,pfxlen) ;
                       ˜˜˜˜˜          ^˜˜˜˜˜
CoinParamUtils.cpp:231:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            field = field.substr(pfxlen) ; } } }
                    ˜˜˜˜˜        ^˜˜˜˜˜
CoinParamUtils.cpp:312:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    for (i = length-1 ; i >= 0 && name[i] == '?' ; i--)
                                  ˜˜˜˜ ^
CoinParamUtils.cpp:326:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    name = name.substr(0,length-numQuery) ;
           ˜˜˜˜          ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
CoinParamUtils.cpp:543:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { CoinParam *param =  paramVec[i] ;
                        ˜˜˜˜˜˜˜˜ ^
CoinParamUtils.cpp:545:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    int match = paramVec[i]->matches(name) ;
                ˜˜˜˜˜˜˜˜ ^
CoinParamUtils.cpp:616:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { CoinParam *param =  paramVec[i] ;
                          ˜˜˜˜˜˜˜˜ ^
CoinParamUtils.cpp:628:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        << paramVec[matchNdx]->matchName() << "." ; }
           ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinParamUtils.cpp:632:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      << paramVec[lclNdx]->matchName() << "." ; } }
         ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
CoinParamUtils.cpp:636:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
              << paramVec[matchNdx]->matchName() ;
                 ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinParamUtils.cpp:644:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { std::cout << paramVec[lclNdx]->shortHelp() ; }
                   ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
CoinParamUtils.cpp:646:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { paramVec[lclNdx]->printLongHelp() ; } }
      ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
CoinParamUtils.cpp:670:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { CoinParam *param = paramVec[i] ;
                       ˜˜˜˜˜˜˜˜ ^
CoinParamUtils.cpp:756:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { CoinParam *param = paramVec[i] ;
                         ˜˜˜˜˜˜˜˜ ^
CoinParamUtils.cpp:775:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { CoinParam *param = paramVec[i] ;
                         ˜˜˜˜˜˜˜˜ ^
CoinParamUtils.cpp:786:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { CoinParam *param = paramVec[i] ;
                         ˜˜˜˜˜˜˜˜ ^
16 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPostsolveMatrix.lo CoinPostsolveMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPostsolveMatrix.cpp  -fno-common -DPIC -o CoinPostsolveMatrix.o
In file included from CoinPostsolveMatrix.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPostsolveMatrix.cpp:12:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
10 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPrePostsolveMatrix.lo CoinPrePostsolveMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPrePostsolveMatrix.cpp  -fno-common -DPIC -o CoinPrePostsolveMatrix.o
In file included from CoinPrePostsolveMatrix.cpp:10:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPrePostsolveMatrix.cpp:11:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
10 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveDoubleton.lo CoinPresolveDoubleton.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveDoubleton.cpp  -fno-common -DPIC -o CoinPresolveDoubleton.o
In file included from CoinPresolveDoubleton.cpp:10:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveDoubleton.cpp:11:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinPresolveDoubleton.cpp:655:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (movement) { 
          ˜˜  ^˜˜˜˜˜˜˜
CoinPresolveDoubleton.cpp:665:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (movement) {
          ˜˜  ^˜˜˜˜˜˜˜
CoinPresolveDoubleton.cpp:1166:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (colels[kcs]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveDoubleton.cpp:1173:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (colels[kcs]) {
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveDoubleton.cpp:1204:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!element1[i]) {
            ˜^˜˜˜˜˜˜˜˜˜˜
15 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveDual.lo CoinPresolveDual.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveDual.cpp  -fno-common -DPIC -o CoinPresolveDual.o
In file included from CoinPresolveDual.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveDual.cpp:13:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPresolveDual.cpp:236:20: warning: unused variable 'lb' [-Wunused-variable]
      const double lb = clo[icol] ;
                   ^
CoinPresolveDual.cpp:237:20: warning: unused variable 'ub' [-Wunused-variable]
      const double ub = cup[icol] ;
                   ^
CoinPresolveDual.cpp:642:13: warning: unused variable 'no_clb' [-Wunused-variable]
        const bool no_clb = (active[j]&5)==0 ;
                   ^
CoinPresolveDual.cpp:1434:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!firstCoeff) {
              ˜^˜˜˜˜˜˜˜˜˜
CoinPresolveDual.cpp:1473:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!rhs) {
              ˜^˜˜
15 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveDupcol.lo CoinPresolveDupcol.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveDupcol.cpp  -fno-common -DPIC -o CoinPresolveDupcol.o
In file included from CoinPresolveDupcol.cpp:12:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveDupcol.cpp:17:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPresolveDupcol.cpp:396:24: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    bool takeColumn= (!clo1&&!clo2);
                      ˜^˜˜˜
CoinPresolveDupcol.cpp:396:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    bool takeColumn= (!clo1&&!clo2);
                             ˜^˜˜˜
CoinPresolveDupcol.cpp:721:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!clo1&&!clo2) {
          ˜^˜˜˜
CoinPresolveDupcol.cpp:721:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!clo1&&!clo2) {
                 ˜^˜˜˜
In file included from CoinPresolveDupcol.cpp:1291:
In file included from ./CoinFactorization.hpp:22:
./CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinPresolveDupcol.cpp:1336:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (rowLower[i]) {
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveDupcol.cpp:1482:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memset(minValue,0,numberRows*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveDupcol.cpp:1483:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memset(maxValue,0,numberRows*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveDupcol.cpp:1497:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if(minValue[i])
              ˜˜ ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveDupcol.cpp:1598:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(markCol,0,ncols);
  ˜˜˜˜˜˜           ^˜˜˜˜
CoinPresolveDupcol.cpp:1625:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (value2) {
              ˜˜  ^˜˜˜˜˜
CoinPresolveDupcol.cpp:1832:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!cost[icol]) {
            ˜^˜˜˜˜˜˜˜˜˜
CoinPresolveDupcol.cpp:2070:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(actions,boundRecords,nactions*sizeof(action));
                                ^˜˜˜˜˜˜˜˜
In file included from CoinPresolveDupcol.cpp:15:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinPresolveDupcol.cpp:185:5: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
    CoinSort_2(hrow+mcstrt[j],hrow+mcstrt[j]+hincol[j],
    ^
In file included from CoinPresolveDupcol.cpp:15:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinPresolveDupcol.cpp:248:3: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
  CoinSort_2(colsum,colsum+nlook,sort) ;
  ^
In file included from CoinPresolveDupcol.cpp:17:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveDupcol.cpp:906:39: note: in instantiation of function template specialization 'CoinCopyOfArray<dupcol_action::action>' requested here
  { next = new dupcol_action(nactions,CoinCopyOfArray(actions,nactions),next) ;
                                      ^
In file included from CoinPresolveDupcol.cpp:14:
./CoinPresolveDupcol.hpp:94:13: warning: private field 'nactions_' is not used [-Wunused-private-field]
  const int nactions_;
            ^
./CoinPresolveDupcol.hpp:95:23: warning: private field 'actions_' is not used [-Wunused-private-field]
  const action *const actions_;
                      ^
./CoinPresolveDupcol.hpp:122:13: warning: private field 'nactions_' is not used [-Wunused-private-field]
  const int nactions_;
            ^
./CoinPresolveDupcol.hpp:123:23: warning: private field 'actions_' is not used [-Wunused-private-field]
  const action *const actions_;
                      ^
./CoinPresolveDupcol.hpp:160:13: warning: private field 'nactions_' is not used [-Wunused-private-field]
  const int nactions_;
            ^
./CoinPresolveDupcol.hpp:161:23: warning: private field 'actions_' is not used [-Wunused-private-field]
  const action *const actions_;
                      ^
34 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveEmpty.lo CoinPresolveEmpty.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveEmpty.cpp  -fno-common -DPIC -o CoinPresolveEmpty.o
In file included from CoinPresolveEmpty.cpp:10:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveEmpty.cpp:11:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
10 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveFixed.lo CoinPresolveFixed.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveFixed.cpp  -fno-common -DPIC -o CoinPresolveFixed.o
In file included from CoinPresolveFixed.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveFixed.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPresolveFixed.cpp:215:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(mark,0,ncols);
  ˜˜˜˜˜˜        ^˜˜˜˜
CoinPresolveFixed.cpp:564:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (movement) {
    ˜˜  ^˜˜˜˜˜˜˜
CoinPresolveFixed.cpp:776:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (cost[js] && hincol[js] == 1 && cup[js] > clo[js]) {
        ^˜˜˜˜˜˜˜ ˜˜
CoinPresolveFixed.cpp:816:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (cost[js] && cup[js] > clo[js]) {
            ^˜˜˜˜˜˜˜ ˜˜
CoinPresolveFixed.cpp:828:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (!cost[j] && integerType[j]) nThen++ ;
                    ˜^˜˜˜˜˜˜
15 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveForcing.lo CoinPresolveForcing.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveForcing.cpp  -fno-common -DPIC -o CoinPresolveForcing.o
In file included from CoinPresolveForcing.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveForcing.cpp:13:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveForcing.cpp:389:6: note: in instantiation of function template specialization 'CoinCopyOfArray<forcing_constraint_action::action>' requested here
                                 CoinCopyOfArray(actions,nactions),next) ;
                                 ^
11 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveHelperFunctions.lo CoinPresolveHelperFunctions.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveHelperFunctions.cpp  -fno-common -DPIC -o CoinPresolveHelperFunctions.o
In file included from CoinPresolveHelperFunctions.cpp:17:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveHelperFunctions.cpp:18:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinPresolveHelperFunctions.cpp:213:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           reinterpret_cast<void *>(&minndxs[kcsx]),majlens[k]*sizeof(int)) ;
                                                    ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveHelperFunctions.cpp:215:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           reinterpret_cast<void *>(&els[kcsx]),majlens[k]*sizeof(double)) ;
                                                ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveHelperFunctions.cpp:261:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  { memcpy(dArray,elems+offset,length*sizeof(double)) ;
                               ^˜˜˜˜˜˜
CoinPresolveHelperFunctions.cpp:262:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(iArray,indices+offset,length*sizeof(int)) ; }
                                 ^˜˜˜˜˜˜
14 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveImpliedFree.lo CoinPresolveImpliedFree.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveImpliedFree.cpp  -fno-common -DPIC -o CoinPresolveImpliedFree.o
In file included from CoinPresolveImpliedFree.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveImpliedFree.cpp:17:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinPresolveImpliedFree.cpp:709:49: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (maxNewCost>1000.0*(maxOldCost+1.0) && maxOldCost) {
                                             ˜˜ ^˜˜˜˜˜˜˜˜˜
In file included from CoinPresolveImpliedFree.cpp:18:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinPresolveImpliedFree.cpp:958:2: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
        CoinSort_2(colIndices+tgtrs,colIndices+tgtre,rowCoeffs+tgtrs) ;
        ^
12 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveIsolated.lo CoinPresolveIsolated.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveIsolated.cpp  -fno-common -DPIC -o CoinPresolveIsolated.o
In file included from CoinPresolveIsolated.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveIsolated.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveIsolated.cpp:108:6: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
                                        CoinCopyOfArray(&hcol[krs], nc),
                                        ^
In file included from CoinPresolveIsolated.cpp:11:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveIsolated.cpp:109:6: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
                                        CoinCopyOfArray(&rowels[krs], nc),
                                        ^
12 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveMatrix.lo CoinPresolveMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveMatrix.cpp  -fno-common -DPIC -o CoinPresolveMatrix.o
In file included from CoinPresolveMatrix.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveMatrix.cpp:12:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
10 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolvePsdebug.lo CoinPresolvePsdebug.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolvePsdebug.cpp  -fno-common -DPIC -o CoinPresolvePsdebug.o
In file included from CoinPresolvePsdebug.cpp:10:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolvePsdebug.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
10 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveMonitor.lo CoinPresolveMonitor.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveMonitor.cpp  -fno-common -DPIC -o CoinPresolveMonitor.o
In file included from CoinPresolveMonitor.cpp:8:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveMonitor.cpp:10:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveMonitor.cpp:9:
In file included from ./CoinPackedVector.hpp:13:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
./CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CoinPresolveMonitor.cpp:9:
In file included from ./CoinPackedVector.hpp:13:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
./CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
12 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveSingleton.lo CoinPresolveSingleton.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveSingleton.cpp  -fno-common -DPIC -o CoinPresolveSingleton.o
In file included from CoinPresolveSingleton.cpp:9:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveSingleton.cpp:10:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:314:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (movement) {
      ˜˜  ^˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:571:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (dcost[iCol])
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:609:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (dcost[iCol])
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:611:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        } else if ((dcost[iCol]&&currentLower!=currentUpper)||rowObjective[iRow]) {
                    ^˜˜˜˜˜˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:611:63: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        } else if ((dcost[iCol]&&currentLower!=currentUpper)||rowObjective[iRow]) {
                                                            ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:673:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(temp,actions,nactions*sizeof(action)) ;
                              ^˜˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:718:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (rowObjective&&dcost[iCol]) {
                        ˜˜^˜˜˜˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:734:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (movement) 
          ˜˜  ^˜˜˜˜˜˜˜
CoinPresolveSingleton.cpp:877:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!dcost[iCol]) {
        ˜^˜˜˜˜˜˜˜˜˜˜
19 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveSubst.lo CoinPresolveSubst.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveSubst.cpp  -fno-common -DPIC -o CoinPresolveSubst.o
In file included from CoinPresolveSubst.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveSubst.cpp:16:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveSubst.cpp:17:
In file included from ./CoinSort.hpp:12:
./CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
./CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
CoinPresolveSubst.cpp:514:7: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
      CoinSort_2(colIndices+tgtrs,colIndices+tgtre,rowCoeffs+tgtrs) ;
      ^
In file included from CoinPresolveSubst.cpp:16:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveSubst.cpp:689:8: note: in instantiation of function template specialization 'CoinCopyOfArray<subst_constraint_action::action>' requested here
                                   CoinCopyOfArray(actions,nactions),next) ;
                                   ^
12 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveTighten.lo CoinPresolveTighten.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveTighten.cpp  -fno-common -DPIC -o CoinPresolveTighten.o
In file included from CoinPresolveTighten.cpp:9:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveTighten.cpp:13:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveTighten.cpp:290:44: note: in instantiation of function template specialization 'CoinCopyOfArray<do_tighten_action::action>' requested here
    next = new do_tighten_action(nactions, CoinCopyOfArray(actions,nactions), next);
                                           ^
11 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveTripleton.lo CoinPresolveTripleton.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveTripleton.cpp  -fno-common -DPIC -o CoinPresolveTripleton.o
In file included from CoinPresolveTripleton.cpp:10:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveTripleton.cpp:11:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
CoinPresolveTripleton.cpp:355:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(mark,0,ncols);
  ˜˜˜˜˜˜        ^˜˜˜˜
CoinPresolveTripleton.cpp:723:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(element1,0,nrows*sizeof(double));
                    ^˜˜˜˜˜
CoinPresolveTripleton.cpp:726:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(element2,0,nrows*sizeof(double));
                    ^˜˜˜˜˜
13 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveUseless.lo CoinPresolveUseless.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveUseless.cpp  -fno-common -DPIC -o CoinPresolveUseless.o
In file included from CoinPresolveUseless.cpp:8:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CoinPresolveUseless.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveUseless.cpp:689:18: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    f->rowcols = CoinCopyOfArray(&hcol[krs], hinrow[irow]);
                 ^
In file included from CoinPresolveUseless.cpp:11:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinPresolveUseless.cpp:690:18: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    f->rowels  = CoinCopyOfArray(&rowels[krs], hinrow[irow]);
                 ^
12 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinPresolveZeros.lo CoinPresolveZeros.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinPresolveZeros.cpp  -fno-common -DPIC -o CoinPresolveZeros.o
In file included from CoinPresolveZeros.cpp:9:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinPresolveZeros.cpp:10:
In file included from ./CoinPresolveMatrix.hpp:11:
In file included from ./CoinMessage.hpp:24:
./CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
./CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
10 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinRational.lo CoinRational.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinRational.cpp  -fno-common -DPIC -o CoinRational.o
CoinRational.cpp:60:23: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
   numerator_ += labs(intpart) * denominator_;
                 ˜˜˜˜ ^˜˜˜˜˜˜
1 warning generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinSearchTree.lo CoinSearchTree.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinSearchTree.cpp  -fno-common -DPIC -o CoinSearchTree.o
In file included from CoinSearchTree.cpp:7:
In file included from ./CoinSearchTree.hpp:15:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinSearchTree.cpp:7:
./CoinSearchTree.hpp:438:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    inline size_t size() const { return candidates_->size(); }
                                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CoinSearchTree.hpp:439:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    inline size_t numInserted() const { return candidates_->numInserted(); }
                                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
8 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinShallowPackedVector.lo CoinShallowPackedVector.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinShallowPackedVector.cpp  -fno-common -DPIC -o CoinShallowPackedVector.o
In file included from CoinShallowPackedVector.cpp:11:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
6 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinSnapshot.lo CoinSnapshot.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinSnapshot.cpp  -fno-common -DPIC -o CoinSnapshot.o
In file included from CoinSnapshot.cpp:8:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinSnapshot.cpp:149:17: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    colLower_ = CoinCopyOfArray(rhs.colLower_,numCols_);
                ^
In file included from CoinSnapshot.cpp:8:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinSnapshot.cpp:173:16: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
    colType_ = CoinCopyOfArray(rhs.colType_,numCols_);
               ^
In file included from CoinSnapshot.cpp:8:
./CoinHelperFunctions.hpp:221:36: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinSnapshot.cpp:244:15: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  colLower_ = CoinCopyOfArray(collb,numCols_,0.0);
              ^
9 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinWarmStartBasis.lo CoinWarmStartBasis.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinWarmStartBasis.cpp  -fno-common -DPIC -o CoinWarmStartBasis.o
In file included from CoinWarmStartBasis.cpp:14:
In file included from ./CoinWarmStartBasis.hpp:19:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
CoinWarmStartBasis.cpp:33:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset (structuralStatus_, 0, (4*nintS) * sizeof(char));
                                   ˜^˜˜˜˜˜  ˜
CoinWarmStartBasis.cpp:35:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset (artificialStatus_, 0, (4*nintA) * sizeof(char));
                                   ˜^˜˜˜˜˜  ˜
CoinWarmStartBasis.cpp:156:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(array,0,4*maxSize_*sizeof(char));
                     ˜^˜˜˜˜˜˜˜˜˜
CoinWarmStartBasis.cpp:171:25: warning: operand of ? changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                (nCharOldA>nCharNewA)?nCharNewA:nCharOldA);
                                      ^˜˜˜˜˜˜˜˜
CoinWarmStartBasis.cpp:171:35: warning: operand of ? changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                (nCharOldA>nCharNewA)?nCharNewA:nCharOldA);
                                                ^˜˜˜˜˜˜˜˜
CoinWarmStartBasis.cpp:293:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(deleted,0,numStructural_*sizeof(char));
                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CoinWarmStartBasis.cpp:576:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    { diffNdx[numberChanged] = i|0x80000000 ;
                               ^˜
CoinWarmStartBasis.cpp:579:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  { diffNdx[numberChanged] = i|0x80000000 ;
                             ^˜
CoinWarmStartBasis.cpp:590:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    { diffNdx[numberChanged] = i ;
                             ˜ ^
CoinWarmStartBasis.cpp:593:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  { diffNdx[numberChanged] = i ;
                           ˜ ^
CoinWarmStartBasis.cpp:700:18: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
  difference_[0]=artifCnt;
                ˜^˜˜˜˜˜˜˜
In file included from CoinWarmStartBasis.cpp:14:
In file included from ./CoinWarmStartBasis.hpp:19:
./CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CoinWarmStartBasis.cpp:717:21: note: in instantiation of function template specialization 'CoinCopyOfArray<unsigned int>' requested here
    { difference_ = CoinCopyOfArray(rhs.difference_,2*sze_); }
                    ^
18 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinWarmStartVector.lo CoinWarmStartVector.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinWarmStartVector.cpp  -fno-common -DPIC -o CoinWarmStartVector.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinWarmStartDual.lo CoinWarmStartDual.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinWarmStartDual.cpp  -fno-common -DPIC -o CoinWarmStartDual.o
In file included from CoinWarmStartDual.cpp:13:
In file included from ./CoinWarmStartDual.hpp:9:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinWarmStartDual.cpp:13:
In file included from ./CoinWarmStartDual.hpp:11:
./CoinWarmStartVector.hpp:368:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      diffNdx[numberChanged] = i ;
                             ˜ ^
./CoinWarmStartVector.hpp:373:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    diffNdx[numberChanged] = i ;
                           ˜ ^
./CoinWarmStartVector.hpp:465:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffNdxs_,rhs.diffNdxs_,sze_*sizeof(unsigned int)) ;
                                   ^˜˜˜˜
./CoinWarmStartDual.hpp:143:7: note: in instantiation of member function 'CoinWarmStartVectorDiff<double>::CoinWarmStartVectorDiff' requested here
      diff_(rhs.diff_) {}
      ^
In file included from CoinWarmStartDual.cpp:13:
In file included from ./CoinWarmStartDual.hpp:11:
./CoinWarmStartVector.hpp:467:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffVals_,rhs.diffVals_,sze_*sizeof(T)) ;
                                   ^˜˜˜˜
./CoinWarmStartVector.hpp:482:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffNdxs_,diffNdxs,sze*sizeof(unsigned int)) ;
                              ^˜˜˜
./CoinWarmStartDual.hpp:155:7: note: in instantiation of member function 'CoinWarmStartVectorDiff<double>::CoinWarmStartVectorDiff' requested here
      diff_(sze, diffNdxs, diffVals) {}
      ^
In file included from CoinWarmStartDual.cpp:13:
In file included from ./CoinWarmStartDual.hpp:11:
./CoinWarmStartVector.hpp:484:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffVals_,diffVals,sze*sizeof(T)) ;
                              ^˜˜˜
./CoinWarmStartVector.hpp:368:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      diffNdx[numberChanged] = i ;
                             ˜ ^
CoinWarmStartDual.cpp:39:38: note: in instantiation of member function 'CoinWarmStartVector<double>::generateDiff' requested here
  CoinWarmStartDiff* vecdiff = dual_.generateDiff(&oldDual->dual_);
                                     ^
In file included from CoinWarmStartDual.cpp:13:
In file included from ./CoinWarmStartDual.hpp:11:
./CoinWarmStartVector.hpp:373:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    diffNdx[numberChanged] = i ;
                           ˜ ^
./CoinWarmStartVector.hpp:442:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(diffNdxs_,rhs.diffNdxs_,sze_*sizeof(unsigned int)) ;
                                     ^˜˜˜˜
./CoinWarmStartDual.hpp:120:11: note: in instantiation of member function 'CoinWarmStartVectorDiff<double>::operator=' requested here
  virtual ˜CoinWarmStartDualDiff() {}
          ^
In file included from CoinWarmStartDual.cpp:13:
In file included from ./CoinWarmStartDual.hpp:11:
./CoinWarmStartVector.hpp:444:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(diffVals_,rhs.diffVals_,sze_*sizeof(T)) ;
                                     ^˜˜˜˜
16 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinWarmStartPrimalDual.lo CoinWarmStartPrimalDual.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinWarmStartPrimalDual.cpp  -fno-common -DPIC -o CoinWarmStartPrimalDual.o
In file included from CoinWarmStartPrimalDual.cpp:13:
In file included from ./CoinWarmStartPrimalDual.hpp:9:
./CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
./CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
./CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
./CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
./CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
./CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CoinWarmStartPrimalDual.cpp:13:
In file included from ./CoinWarmStartPrimalDual.hpp:11:
./CoinWarmStartVector.hpp:368:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      diffNdx[numberChanged] = i ;
                             ˜ ^
./CoinWarmStartVector.hpp:373:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    diffNdx[numberChanged] = i ;
                           ˜ ^
./CoinWarmStartVector.hpp:465:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffNdxs_,rhs.diffNdxs_,sze_*sizeof(unsigned int)) ;
                                   ^˜˜˜˜
./CoinWarmStartPrimalDual.hpp:182:5: note: in instantiation of member function 'CoinWarmStartVectorDiff<double>::CoinWarmStartVectorDiff' requested here
    primalDiff_(rhs.primalDiff_), dualDiff_(rhs.dualDiff_) {}
    ^
In file included from CoinWarmStartPrimalDual.cpp:13:
In file included from ./CoinWarmStartPrimalDual.hpp:11:
./CoinWarmStartVector.hpp:467:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffVals_,rhs.diffVals_,sze_*sizeof(T)) ;
                                   ^˜˜˜˜
./CoinWarmStartVector.hpp:368:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      diffNdx[numberChanged] = i ;
                             ˜ ^
CoinWarmStartPrimalDual.cpp:40:21: note: in instantiation of member function 'CoinWarmStartVector<double>::generateDiff' requested here
  vecdiff = primal_.generateDiff(&old->primal_);
                    ^
In file included from CoinWarmStartPrimalDual.cpp:13:
In file included from ./CoinWarmStartPrimalDual.hpp:11:
./CoinWarmStartVector.hpp:373:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    diffNdx[numberChanged] = i ;
                           ˜ ^
./CoinWarmStartVector.hpp:482:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffNdxs_,diffNdxs,sze*sizeof(unsigned int)) ;
                              ^˜˜˜
./CoinWarmStartVector.hpp:380:9: note: in instantiation of member function 'CoinWarmStartVectorDiff<double>::CoinWarmStartVectorDiff' requested here
    new CoinWarmStartVectorDiff<T>(numberChanged,diffNdx,diffVal) ;
        ^
CoinWarmStartPrimalDual.cpp:40:21: note: in instantiation of member function 'CoinWarmStartVector<double>::generateDiff' requested here
  vecdiff = primal_.generateDiff(&old->primal_);
                    ^
In file included from CoinWarmStartPrimalDual.cpp:13:
In file included from ./CoinWarmStartPrimalDual.hpp:11:
./CoinWarmStartVector.hpp:484:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(diffVals_,diffVals,sze*sizeof(T)) ;
                              ^˜˜˜
./CoinWarmStartVector.hpp:442:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(diffNdxs_,rhs.diffNdxs_,sze_*sizeof(unsigned int)) ;
                                     ^˜˜˜˜
./CoinWarmStartPrimalDual.hpp:159:11: note: in instantiation of member function 'CoinWarmStartVectorDiff<double>::operator=' requested here
  virtual ˜CoinWarmStartPrimalDualDiff() {}
          ^
In file included from CoinWarmStartPrimalDual.cpp:13:
In file included from ./CoinWarmStartPrimalDual.hpp:11:
./CoinWarmStartVector.hpp:444:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(diffVals_,rhs.diffVals_,sze_*sizeof(T)) ;
                                     ^˜˜˜˜
16 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD   -o libCoinUtils.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:6:10 CoinAlloc.lo CoinBuild.lo CoinDenseVector.lo CoinError.lo CoinFactorization1.lo CoinFactorization2.lo CoinFactorization3.lo CoinFactorization4.lo CoinSimpFactorization.lo CoinDenseFactorization.lo CoinOslFactorization.lo CoinOslFactorization2.lo CoinOslFactorization3.lo CoinFileIO.lo CoinFinite.lo CoinIndexedVector.lo CoinLpIO.lo CoinMessage.lo CoinMessageHandler.lo CoinModel.lo CoinStructuredModel.lo CoinModelUseful.lo CoinModelUseful2.lo CoinMpsIO.lo CoinPackedMatrix.lo CoinPackedVector.lo CoinPackedVectorBase.lo CoinParam.lo CoinParamUtils.lo CoinPostsolveMatrix.lo CoinPrePostsolveMatrix.lo CoinPresolveDoubleton.lo CoinPresolveDual.lo CoinPresolveDupcol.lo CoinPresolveEmpty.lo CoinPresolveFixed.lo CoinPresolveForcing.lo CoinPresolveHelperFunctions.lo CoinPresolveImpliedFree.lo CoinPresolveIsolated.lo CoinPresolveMatrix.lo CoinPresolvePsdebug.lo CoinPresolveMonitor.lo CoinPresolveSingleton.lo CoinPresolveSubst.lo CoinPresolveTighten.lo CoinPresolveTripleton.lo CoinPresolveUseless.lo CoinPresolveZeros.lo CoinRational.lo CoinSearchTree.lo CoinShallowPackedVector.lo CoinSnapshot.lo CoinWarmStartBasis.lo CoinWarmStartVector.lo CoinWarmStartDual.lo CoinWarmStartPrimalDual.lo -framework Accelerate -framework Accelerate -lm  
mkdir .libs
ar cru .libs/libCoinUtils.a  CoinAlloc.o CoinBuild.o CoinDenseVector.o CoinError.o CoinFactorization1.o CoinFactorization2.o CoinFactorization3.o CoinFactorization4.o CoinSimpFactorization.o CoinDenseFactorization.o CoinOslFactorization.o CoinOslFactorization2.o CoinOslFactorization3.o CoinFileIO.o CoinFinite.o CoinIndexedVector.o CoinLpIO.o CoinMessage.o CoinMessageHandler.o CoinModel.o CoinStructuredModel.o CoinModelUseful.o CoinModelUseful2.o CoinMpsIO.o CoinPackedMatrix.o CoinPackedVector.o CoinPackedVectorBase.o CoinParam.o CoinParamUtils.o CoinPostsolveMatrix.o CoinPrePostsolveMatrix.o CoinPresolveDoubleton.o CoinPresolveDual.o CoinPresolveDupcol.o CoinPresolveEmpty.o CoinPresolveFixed.o CoinPresolveForcing.o CoinPresolveHelperFunctions.o CoinPresolveImpliedFree.o CoinPresolveIsolated.o CoinPresolveMatrix.o CoinPresolvePsdebug.o CoinPresolveMonitor.o CoinPresolveSingleton.o CoinPresolveSubst.o CoinPresolveTighten.o CoinPresolveTripleton.o CoinPresolveUseless.o CoinPresolveZeros.o CoinRational.o CoinSearchTree.o CoinShallowPackedVector.o CoinSnapshot.o CoinWarmStartBasis.o CoinWarmStartVector.o CoinWarmStartDual.o CoinWarmStartPrimalDual.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinAlloc.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinPresolvePsdebug.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinWarmStartVector.o) has no symbols
ranlib .libs/libCoinUtils.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinAlloc.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinPresolvePsdebug.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinWarmStartVector.o) has no symbols
creating libCoinUtils.la
(cd .libs && rm -f libCoinUtils.la && ln -s ../libCoinUtils.la libCoinUtils.la)
make[3]: Nothing to be done for `all-am'.
Making all in Osi
Making all in src/Osi
make  all-am
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiAuxInfo.lo OsiAuxInfo.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiAuxInfo.cpp  -fno-common -DPIC -o OsiAuxInfo.o
In file included from OsiAuxInfo.cpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiAuxInfo.cpp:12:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
OsiAuxInfo.cpp:128:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(betterSolution,bestSolution_,CoinMin(numberColumns,sizeSolution_)*sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiAuxInfo.cpp:149:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(solution,bestSolution_,numberColumns*sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiAuxInfo.cpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiAuxInfo.cpp:91:21: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    bestSolution_ = CoinCopyOfArray(rhs.bestSolution_,sizeSolution_);
                    ^
13 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiBranchingObject.lo OsiBranchingObject.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiBranchingObject.cpp  -fno-common -DPIC -o OsiBranchingObject.o
In file included from OsiBranchingObject.cpp:14:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiBranchingObject.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
OsiBranchingObject.cpp:587:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (preferredWay_>=0&&returnValue)
                      ˜˜^˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:848:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(members_,which,numberMembers_*sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:850:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(weights_,weights,numberMembers_*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:881:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(members_,rhs.members_,numberMembers_*sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:882:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(weights_,rhs.weights_,numberMembers_*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:910:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(members_,rhs.members_,numberMembers_*sizeof(int));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:911:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(weights_,rhs.weights_,numberMembers_*sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:952:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
    if (upper[iColumn]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1039:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (useful[iRow]) {
            ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1041:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!value)
                  ˜^˜˜˜˜
OsiBranchingObject.cpp:1087:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (useful2[iRow]) {
              ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1089:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (!value)
                    ˜^˜˜˜˜
OsiBranchingObject.cpp:1127:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (movement) {
          ˜˜  ^˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1184:22: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (value>sum&&upper[iColumn]) {
                   ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1199:6: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (upper[iColumn]||upper[jColumn]) {
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1199:22: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (upper[iColumn]||upper[jColumn]) {
                          ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1200:17: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          firstNonZero=upper[jColumn] ? j-1 : j;
                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1201:16: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          lastNonZero=upper[iColumn] ? j : j-1;
                     ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1274:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
    if (upper[iColumn]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1406:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (bound) {
    ˜˜  ^˜˜˜˜
OsiBranchingObject.cpp:1418:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      else if (bound)
           ˜˜  ^˜˜˜˜
OsiBranchingObject.cpp:1424:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (bound)
      ˜˜  ^˜˜˜˜
OsiBranchingObject.cpp:1433:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      else if (bound)
           ˜˜  ^˜˜˜˜
OsiBranchingObject.cpp:1439:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (bound)
      ˜˜  ^˜˜˜˜
OsiBranchingObject.cpp:1545:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(bound_,rhs.bound_,(numberRanges_+1)*rangeType_*sizeof(double));
                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
OsiBranchingObject.cpp:1573:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(bound_,rhs.bound_,(numberRanges_+1)*rangeType_*sizeof(double));
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiBranchingObject.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiBranchingObject.cpp:257:17: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    solution_ = CoinCopyOfArray(solver_->getColSolution(),numberColumns_);
                ^
In file included from OsiBranchingObject.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
OsiBranchingObject.cpp:856:5: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
    CoinSort_2(weights_,weights_+numberMembers_,members_);
    ^
38 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiChooseVariable.lo OsiChooseVariable.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiChooseVariable.cpp  -fno-common -DPIC -o OsiChooseVariable.o
In file included from OsiChooseVariable.cpp:10:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiChooseVariable.cpp:12:
In file included from ./OsiSolverBranch.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
OsiChooseVariable.cpp:798:17: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          upEstimate = numberUp ? ((upEstimate*sumUp)/numberUp) : (upEstimate*upMultiplier);
                     ˜ ^˜˜˜˜˜˜˜
OsiChooseVariable.cpp:801:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          downEstimate = numberDown ? ((downEstimate*sumDown)/numberDown) : (downEstimate*downMultiplier);
                       ˜ ^˜˜˜˜˜˜˜˜˜
OsiChooseVariable.cpp:1006:34: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (obj->preferredWay()>=0&&obj->infeasibility())
                                      ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiChooseVariable.cpp:12:
In file included from ./OsiSolverBranch.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiChooseVariable.cpp:94:23: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
      goodSolution_ = CoinCopyOfArray(rhs.goodSolution_,numberColumns);
                      ^
In file included from OsiChooseVariable.cpp:12:
In file included from ./OsiSolverBranch.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiChooseVariable.cpp:98:13: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    list_ = CoinCopyOfArray(rhs.list_,numberObjects);
            ^
In file included from OsiChooseVariable.cpp:12:
In file included from ./OsiSolverBranch.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
OsiChooseVariable.cpp:277:7: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
      CoinSort_2(useful_,useful_+numberOnList_,list_);
      ^
16 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiColCut.lo OsiColCut.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiColCut.cpp  -fno-common -DPIC -o OsiColCut.o
In file included from OsiColCut.cpp:10:
In file included from ./OsiColCut.hpp:13:
In file included from ./OsiCut.hpp:9:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiColCut.cpp:10:
In file included from ./OsiColCut.hpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiColCut.cpp:10:
In file included from ./OsiColCut.hpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
6 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiCut.lo OsiCut.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiCut.cpp  -fno-common -DPIC -o OsiCut.o
In file included from OsiCut.cpp:10:
In file included from ./OsiCut.hpp:9:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiCuts.lo OsiCuts.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiCuts.cpp  -fno-common -DPIC -o OsiCuts.o
In file included from OsiCuts.cpp:13:
In file included from ./OsiCuts.hpp:13:
In file included from ./OsiRowCut.hpp:11:
In file included from ./OsiCut.hpp:9:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiCuts.cpp:13:
./OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
OsiCuts.cpp:82:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (rowCutPtrs_[i]->globallyValidAsInteger()!=2)
        ˜˜˜˜˜˜˜˜˜˜˜ ^
OsiCuts.cpp:83:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      delete rowCutPtrs_[i];
             ˜˜˜˜˜˜˜˜˜˜˜ ^
OsiCuts.cpp:89:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (colCutPtrs_[i]->globallyValidAsInteger()!=2)
        ˜˜˜˜˜˜˜˜˜˜˜ ^
OsiCuts.cpp:90:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      delete colCutPtrs_[i];
             ˜˜˜˜˜˜˜˜˜˜˜ ^
In file included from OsiCuts.cpp:13:
In file included from ./OsiCuts.hpp:13:
In file included from ./OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiCuts.cpp:13:
In file included from ./OsiCuts.hpp:13:
In file included from ./OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
19 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiNames.lo OsiNames.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiNames.cpp  -fno-common -DPIC -o OsiNames.o
In file included from OsiNames.cpp:12:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiNames.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
OsiNames.cpp:104:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { rowNames.resize(m) ;
    ˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:109:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { rowNames.reserve(m) ; }
    ˜˜˜˜˜˜˜˜         ^
OsiNames.cpp:113:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { colNames.resize(n) ;
    ˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:118:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { colNames.reserve(n) ; }
    ˜˜˜˜˜˜˜˜         ^
OsiNames.cpp:165:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    buildName << std::setw(digits) << std::setfill('0') ;
                 ˜˜˜       ^˜˜˜˜˜
OsiNames.cpp:225:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        name = rowNames_[ndx] ;
               ˜˜˜˜˜˜˜˜˜ ^˜˜
OsiNames.cpp:271:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { rowNames_.resize(m+1) ; }
        ˜˜˜˜˜˜˜˜˜        ˜^˜
OsiNames.cpp:273:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { if (rowNames_[i].length() == 0)
            ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:274:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        { rowNames_[i] = dfltRowColName('r',i) ; } }
          ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:275:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      if (rowNames_[m].length() == 0)
          ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:276:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { rowNames_[m] = getObjName() ; }
        ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:323:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        name = colNames_[ndx] ;
               ˜˜˜˜˜˜˜˜˜ ^˜˜
OsiNames.cpp:369:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { colNames_.resize(n) ; }
        ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:371:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { if (colNames_[j].length() == 0)
            ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:372:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        { colNames_[j] = dfltRowColName('c',j) ; } }
          ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:416:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { rowNames_.resize(ndx+1) ; }
        ˜˜˜˜˜˜˜˜˜        ˜˜˜^˜
OsiNames.cpp:419:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { rowNames_.resize(ndx+1) ; }
        ˜˜˜˜˜˜˜˜˜        ˜˜˜^˜
OsiNames.cpp:420:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      rowNames_[ndx] = name ;
      ˜˜˜˜˜˜˜˜˜ ^˜˜
OsiNames.cpp:469:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { setRowName(tgtNdx,srcNames[srcNdx]) ; }
                        ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
OsiNames.cpp:545:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { colNames_.resize(ndx+1) ; }
        ˜˜˜˜˜˜˜˜˜        ˜˜˜^˜
OsiNames.cpp:548:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { colNames_.resize(ndx+1) ; }
        ˜˜˜˜˜˜˜˜˜        ˜˜˜^˜
OsiNames.cpp:549:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      colNames_[ndx] = name ;
      ˜˜˜˜˜˜˜˜˜ ^˜˜
OsiNames.cpp:599:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { setColName(tgtNdx,srcNames[srcNdx]) ; }
                        ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
OsiNames.cpp:674:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { rowNames_.resize(m) ;
    ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:676:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { rowNames_[i] = mps.rowName(i) ; }
      ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:678:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    colNames_.resize(n) ;
    ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:680:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { colNames_[j] = mps.columnName(j) ; } }
      ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:720:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    rowNames_.resize(m) ;
    ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:728:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      rowNames_[i] = nme ; }
      ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:729:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    rowNames_.resize(maxRowNdx+1) ;
    ˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜^˜
OsiNames.cpp:731:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    colNames_.resize(n) ;
    ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:739:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      colNames_[j] = nme ; }
      ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:740:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    colNames_.resize(maxColNdx+1) ; }
    ˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜^˜
OsiNames.cpp:782:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    rowNames_.resize(m) ;
    ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:790:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      rowNames_[i] = nme ; }
      ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:791:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    rowNames_.resize(maxRowNdx+1) ;
    ˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜^˜
OsiNames.cpp:794:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    colNames_.resize(n) ;
    ˜˜˜˜˜˜˜˜˜        ^
OsiNames.cpp:802:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      colNames_[j] = nme ; }
      ˜˜˜˜˜˜˜˜˜ ^
OsiNames.cpp:803:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    colNames_.resize(maxColNdx+1) ; }
    ˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜^˜
45 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiPresolve.lo OsiPresolve.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiPresolve.cpp  -fno-common -DPIC -o OsiPresolve.o
In file included from OsiPresolve.cpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiPresolve.cpp:25:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiPresolve.cpp:27:
./OsiPresolve.hpp:167:54: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  { presolveActions_  = (presolveActions_&0xffff0000)|(action&0xffff);}
                      ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiPresolve.hpp:167:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  { presolveActions_  = (presolveActions_&0xffff0000)|(action&0xffff);}
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiPresolve.cpp:168:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(acts,0,nrows*sizeof(double));
                    ^˜˜˜˜˜
OsiPresolve.cpp:318:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(originalColumn_,prob.originalColumn_,ncolsNow*sizeof(int));
                                                  ^˜˜˜˜˜˜˜˜
OsiPresolve.cpp:322:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(originalRow_,prob.originalRow_,nrowsNow*sizeof(int));
                                            ^˜˜˜˜˜˜˜˜
OsiPresolve.cpp:365:14: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
              (prob.presolveOptions_&0x80000000) == 0) {
               ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiPresolve.cpp:1377:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(rowChanged_,0,nrows_);
  ˜˜˜˜˜˜               ^˜˜˜˜˜
OsiPresolve.cpp:1379:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(colChanged_,0,ncols_);
  ˜˜˜˜˜˜               ^˜˜˜˜˜
OsiPresolve.cpp:1449:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (nonLinearValue) {
  ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiPresolve.cpp:1493:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(sol_,presol,ncols_*sizeof(double));;
                       ^˜˜˜˜˜˜
OsiPresolve.cpp:1495:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(acts_,si->getRowActivity(),nrows_*sizeof(double));
                                      ^˜˜˜˜˜˜
21 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCut.lo OsiRowCut.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCut.cpp  -fno-common -DPIC -o OsiRowCut.o
In file included from OsiRowCut.cpp:12:
In file included from ./OsiRowCut.hpp:11:
In file included from ./OsiCut.hpp:9:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiRowCut.cpp:12:
In file included from ./OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiRowCut.cpp:12:
In file included from ./OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
6 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCutDebugger.lo OsiRowCutDebugger.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCutDebugger.cpp  -fno-common -DPIC -o OsiRowCutDebugger.o
In file included from OsiRowCutDebugger.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiRowCutDebugger.cpp:19:
In file included from ./OsiRowCutDebugger.hpp:16:
In file included from ./OsiCuts.hpp:13:
In file included from ./OsiRowCut.hpp:11:
In file included from ./OsiCut.hpp:9:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiRowCutDebugger.cpp:19:
In file included from ./OsiRowCutDebugger.hpp:16:
./OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
OsiRowCutDebugger.cpp:225:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (value || !ok) std::cout << j << " " << value << std::endl ;
            ^˜˜˜˜ ˜˜
OsiRowCutDebugger.cpp:1610:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset (mark,0,numberColumns_);
    ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiRowCutDebugger.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiRowCutDebugger.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
23 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSolverBranch.lo OsiSolverBranch.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSolverBranch.cpp  -fno-common -DPIC -o OsiSolverBranch.o
In file included from OsiSolverBranch.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiSolverBranch.cpp:16:
In file included from ./OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
OsiSolverBranch.cpp:121:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempI+putNow,indices_+start_[2-base],numberNow*sizeof(int));
                                              ^˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:122:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempD+putNow,bound_+start_[2-base],numberNow*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:123:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempI+putNew,whichLower,numberTighterLower*sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:124:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempD+putNew,newLower,numberTighterLower*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:126:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempI+putNew,whichUpper,numberTighterUpper*sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:127:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempD+putNew,newUpper,numberTighterUpper*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:184:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempI+putNow,indices_+start_[2-base],numberNow*sizeof(int));
                                              ^˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:185:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempD+putNow,bound_+start_[2-base],numberNow*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:186:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempI+putNew,whichLower,numberTighterLower*sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:187:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempD+putNew,newLower,numberTighterLower*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:189:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempI+putNew,whichUpper,numberTighterUpper*sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverBranch.cpp:190:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempD+putNew,newUpper,numberTighterUpper*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiSolverBranch.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiSolverBranch.cpp:43:16: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    indices_ = CoinCopyOfArray(rhs.indices_,size);
               ^
In file included from OsiSolverBranch.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiSolverBranch.cpp:44:14: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    bound_ = CoinCopyOfArray(rhs.bound_,size);
             ^
24 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSolverInterface.lo OsiSolverInterface.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSolverInterface.cpp  -fno-common -DPIC -o OsiSolverInterface.o
In file included from OsiSolverInterface.cpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiSolverInterface.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMpsIO.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiSolverInterface.cpp:21:
./OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
./OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from OsiSolverInterface.cpp:30:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
OsiSolverInterface.cpp:131:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        strictColSolution_[i] = colLower[i];
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterface.cpp:134:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      strictColSolution_[i] = colUpper[i];
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterface.cpp:1329:42: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
   memcpy(objective,getObjCoefficients(),numcols*sizeof(double));
                                         ^˜˜˜˜˜˜˜
OsiSolverInterface.cpp:1880:8: warning: unused variable 'gotHint' [-Wunused-variable]
  bool gotHint = (getHintParam(OsiDoReducePrint,takeHint,strength));
       ^
In file included from OsiSolverInterface.cpp:21:
In file included from ./OsiCuts.hpp:13:
In file included from ./OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiSolverInterface.cpp:21:
In file included from ./OsiCuts.hpp:13:
In file included from ./OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
27 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD   -o libOsi.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiAuxInfo.lo OsiBranchingObject.lo OsiChooseVariable.lo OsiColCut.lo OsiCut.lo OsiCuts.lo OsiNames.lo OsiPresolve.lo OsiRowCut.lo OsiRowCutDebugger.lo OsiSolverBranch.lo OsiSolverInterface.lo /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    
mkdir .libs
ar cru .libs/libOsi.a  OsiAuxInfo.o OsiBranchingObject.o OsiChooseVariable.o OsiColCut.o OsiCut.o OsiCuts.o OsiNames.o OsiPresolve.o OsiRowCut.o OsiRowCutDebugger.o OsiSolverBranch.o OsiSolverInterface.o
ranlib .libs/libOsi.a
creating libOsi.la
(cd .libs && rm -f libOsi.la && ln -s ../libOsi.la libOsi.la)
Making all in src/OsiCommonTest
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiColCutTest.lo OsiColCutTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiColCutTest.cpp  -fno-common -DPIC -o OsiColCutTest.o
In file included from OsiColCutTest.cpp:13:
In file included from ../../src/Osi/OsiColCut.hpp:13:
In file included from ../../src/Osi/OsiCut.hpp:9:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
OsiColCutTest.cpp:279:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    OSIUNITTEST_ASSERT_ERROR( cut.violated(solution), {}, "osicolcut", "violated");
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
OsiColCutTest.cpp:284:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    OSIUNITTEST_ASSERT_ERROR( cut.violated(solution), {}, "osicolcut", "violated");
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
OsiColCutTest.cpp:289:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    OSIUNITTEST_ASSERT_ERROR(!cut.violated(solution), {}, "osicolcut", "violated");
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
In file included from OsiColCutTest.cpp:13:
In file included from ../../src/Osi/OsiColCut.hpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiColCutTest.cpp:13:
In file included from ../../src/Osi/OsiColCut.hpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
9 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiCutsTest.lo OsiCutsTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiCutsTest.cpp  -fno-common -DPIC -o OsiCutsTest.o
In file included from OsiCutsTest.cpp:9:
In file included from ../../src/Osi/OsiCuts.hpp:13:
In file included from ../../src/Osi/OsiRowCut.hpp:11:
In file included from ../../src/Osi/OsiCut.hpp:9:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiCutsTest.cpp:9:
../../src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from OsiCutsTest.cpp:9:
In file included from ../../src/Osi/OsiCuts.hpp:13:
In file included from ../../src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiCutsTest.cpp:9:
In file included from ../../src/Osi/OsiCuts.hpp:13:
In file included from ../../src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
15 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCutDebuggerTest.lo OsiRowCutDebuggerTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCutDebuggerTest.cpp  -fno-common -DPIC -o OsiRowCutDebuggerTest.o
In file included from OsiRowCutDebuggerTest.cpp:9:
In file included from ../../src/Osi/OsiRowCutDebugger.hpp:16:
In file included from ../../src/Osi/OsiCuts.hpp:13:
In file included from ../../src/Osi/OsiRowCut.hpp:11:
In file included from ../../src/Osi/OsiCut.hpp:9:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiRowCutDebuggerTest.cpp:9:
In file included from ../../src/Osi/OsiRowCutDebugger.hpp:16:
../../src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from OsiRowCutDebuggerTest.cpp:9:
In file included from ../../src/Osi/OsiRowCutDebugger.hpp:16:
In file included from ../../src/Osi/OsiCuts.hpp:13:
In file included from ../../src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiRowCutDebuggerTest.cpp:9:
In file included from ../../src/Osi/OsiRowCutDebugger.hpp:16:
In file included from ../../src/Osi/OsiCuts.hpp:13:
In file included from ../../src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
15 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCutTest.lo OsiRowCutTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCutTest.cpp  -fno-common -DPIC -o OsiRowCutTest.o
In file included from OsiRowCutTest.cpp:11:
In file included from ../../src/Osi/OsiRowCut.hpp:11:
In file included from ../../src/Osi/OsiCut.hpp:9:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
OsiRowCutTest.cpp:344:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    OSIUNITTEST_ASSERT_ERROR(cut.violated(solution), {}, "osirowcut", "violation");
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
OsiRowCutTest.cpp:348:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    OSIUNITTEST_ASSERT_ERROR(!cut.violated(solution), {}, "osirowcut", "violation");
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
OsiRowCutTest.cpp:351:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    OSIUNITTEST_ASSERT_ERROR( cut.violated(solution), {}, "osirowcut", "violation");
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
In file included from OsiRowCutTest.cpp:11:
In file included from ../../src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiRowCutTest.cpp:11:
In file included from ../../src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
9 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSimplexAPITest.lo OsiSimplexAPITest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSimplexAPITest.cpp  -fno-common -DPIC -o OsiSimplexAPITest.o
In file included from OsiSimplexAPITest.cpp:25:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiSimplexAPITest.cpp:30:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
OsiSimplexAPITest.cpp:533:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(fakeCost,si->getObjCoefficients(),numberColumns*sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiSimplexAPITest.cpp:28:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiSimplexAPITest.cpp:28:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
13 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiNetlibTest.lo OsiNetlibTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiNetlibTest.cpp  -fno-common -DPIC -o OsiNetlibTest.o
In file included from OsiNetlibTest.cpp:27:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
OsiNetlibTest.cpp:184:43: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  std::vector<OsiSolverInterface*> vecSiP(numSolvers) ;
                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
OsiNetlibTest.cpp:185:35: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  std::vector<std::string> siName(numSolvers) ;
                           ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
OsiNetlibTest.cpp:186:28: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  std::vector<int> siStage(numSolvers) ;
                   ˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
OsiNetlibTest.cpp:187:34: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  std::vector<int> numProbSolved(numSolvers) ;
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
OsiNetlibTest.cpp:188:33: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  std::vector<double> timeTaken(numSolvers) ;
                      ˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
OsiNetlibTest.cpp:190:12: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { siName[i] = "unknown" ;
    ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:191:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    numProbSolved[i] = 0 ;
    ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:192:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    timeTaken[i] = 0.0 ; }
    ˜˜˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:207:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      vecSiP[i] = vecEmptySiP[i]->clone() ;
      ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:207:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      vecSiP[i] = vecEmptySiP[i]->clone() ;
                  ˜˜˜˜˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:208:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      vecSiP[i]->getStrParam(OsiSolverName,siName[i]) ;
      ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:208:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      vecSiP[i]->getStrParam(OsiSolverName,siName[i]) ;
                                           ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:209:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      siStage[i] = 0 ;
      ˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:217:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      vecSiP[i]->readMps(fn.c_str(),"mps") ;
      ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:219:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        vecSiP[i]->setObjSense(1.0) ;
        ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:221:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        vecSiP[i]->setObjSense(-1.0) ;
        ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:222:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      int nr = vecSiP[i]->getNumRows() ;
               ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:223:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      int nc = vecSiP[i]->getNumCols() ;
               ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:225:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { siStage[i] = 1 ;
        ˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:234:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      for (s1 = 0 ; s1 < numSolvers-1 && siStage[s1] < 1 ; s1++) ;
                                         ˜˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:236:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      for (s2 = s1+1 ; s2 < numSolvers && siStage[s2] < 1 ; s2++) ;
                                          ˜˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:238:74: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cout << "  comparing problem representation for " << siName[s1] << " and " << siName[s2] << " ..." ;
                                                                  ˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:238:99: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cout << "  comparing problem representation for " << siName[s1] << " and " << siName[s2] << " ..." ;
                                                                                           ˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:239:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (OsiUnitTest::compareProblems(vecSiP[s1],vecSiP[s2]))
                                         ˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:239:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (OsiUnitTest::compareProblems(vecSiP[s1],vecSiP[s2]))
                                                    ˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:242:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        for (s2++ ; s2 < numSolvers && siStage[s2] < 1 ; s2++) ;
                                       ˜˜˜˜˜˜˜ ^˜
OsiNetlibTest.cpp:250:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { if (siStage[i] < 1) continue ;
          ˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:253:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_CATCH_ERROR(vecSiP[i]->initialSolve(), continue, *vecSiP[i], "netlib " + mpsName[m]);
                              ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:364:38: note: expanded from macro 'OSIUNITTEST_CATCH_ERROR'
        OSIUNITTEST_CATCH_SEVERITY_EXPECTED(trycode, catchcode, component, testname, OsiUnitTest::TestOutcome::ERROR, false)
                                            ^
./OsiUnitTests.hpp:318:5: note: expanded from macro 'OSIUNITTEST_CATCH_SEVERITY_EXPECTED'
    trycode; \
    ^
OsiNetlibTest.cpp:253:76: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_CATCH_ERROR(vecSiP[i]->initialSolve(), continue, *vecSiP[i], "netlib " + mpsName[m]);
                                                                    ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:364:58: note: expanded from macro 'OSIUNITTEST_CATCH_ERROR'
        OSIUNITTEST_CATCH_SEVERITY_EXPECTED(trycode, catchcode, component, testname, OsiUnitTest::TestOutcome::ERROR, false)
                                                                ^
./OsiUnitTests.hpp:319:29: note: expanded from macro 'OSIUNITTEST_CATCH_SEVERITY_EXPECTED'
    OSIUNITTEST_ADD_OUTCOME(component,testname,#trycode " did not throw exception",\
                            ^
./OsiUnitTests.hpp:269:31: note: expanded from macro 'OSIUNITTEST_ADD_OUTCOME'
    OsiUnitTest::outcomes.add(component,testname,testcondition,severity,\
                              ^
OsiNetlibTest.cpp:253:76: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_CATCH_ERROR(vecSiP[i]->initialSolve(), continue, *vecSiP[i], "netlib " + mpsName[m]);
                                                                    ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:364:58: note: expanded from macro 'OSIUNITTEST_CATCH_ERROR'
        OSIUNITTEST_CATCH_SEVERITY_EXPECTED(trycode, catchcode, component, testname, OsiUnitTest::TestOutcome::ERROR, false)
                                                                ^
./OsiUnitTests.hpp:337:29: note: expanded from macro 'OSIUNITTEST_CATCH_SEVERITY_EXPECTED'
    OSIUNITTEST_ADD_OUTCOME(component,testname,errmsg.str().c_str(),\
                            ^
./OsiUnitTests.hpp:269:31: note: expanded from macro 'OSIUNITTEST_ADD_OUTCOME'
    OsiUnitTest::outcomes.add(component,testname,testcondition,severity,\
                              ^
OsiNetlibTest.cpp:253:76: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_CATCH_ERROR(vecSiP[i]->initialSolve(), continue, *vecSiP[i], "netlib " + mpsName[m]);
                                                                    ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:364:58: note: expanded from macro 'OSIUNITTEST_CATCH_ERROR'
        OSIUNITTEST_CATCH_SEVERITY_EXPECTED(trycode, catchcode, component, testname, OsiUnitTest::TestOutcome::ERROR, false)
                                                                ^
./OsiUnitTests.hpp:339:33: note: expanded from macro 'OSIUNITTEST_CATCH_SEVERITY_EXPECTED'
    OsiUnitTest::failureMessage(component,testname,errmsg.str().c_str()); \
                                ^
OsiNetlibTest.cpp:253:76: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_CATCH_ERROR(vecSiP[i]->initialSolve(), continue, *vecSiP[i], "netlib " + mpsName[m]);
                                                                    ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:364:58: note: expanded from macro 'OSIUNITTEST_CATCH_ERROR'
        OSIUNITTEST_CATCH_SEVERITY_EXPECTED(trycode, catchcode, component, testname, OsiUnitTest::TestOutcome::ERROR, false)
                                                                ^
./OsiUnitTests.hpp:354:29: note: expanded from macro 'OSIUNITTEST_CATCH_SEVERITY_EXPECTED'
    OSIUNITTEST_ADD_OUTCOME(component,testname,errmsg.c_str(),severity,false); \
                            ^
./OsiUnitTests.hpp:269:31: note: expanded from macro 'OSIUNITTEST_ADD_OUTCOME'
    OsiUnitTest::outcomes.add(component,testname,testcondition,severity,\
                              ^
OsiNetlibTest.cpp:253:76: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_CATCH_ERROR(vecSiP[i]->initialSolve(), continue, *vecSiP[i], "netlib " + mpsName[m]);
                                                                    ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:364:58: note: expanded from macro 'OSIUNITTEST_CATCH_ERROR'
        OSIUNITTEST_CATCH_SEVERITY_EXPECTED(trycode, catchcode, component, testname, OsiUnitTest::TestOutcome::ERROR, false)
                                                                ^
./OsiUnitTests.hpp:355:33: note: expanded from macro 'OSIUNITTEST_CATCH_SEVERITY_EXPECTED'
    OsiUnitTest::failureMessage(component,testname,errmsg.c_str()); \
                                ^
OsiNetlibTest.cpp:256:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_ASSERT_ERROR(vecSiP[i]->isProvenOptimal(), {}, *vecSiP[i], "netlib " + mpsName[m]);
                               ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:294:40: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
OsiNetlibTest.cpp:256:74: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      OSIUNITTEST_ASSERT_ERROR(vecSiP[i]->isProvenOptimal(), {}, *vecSiP[i], "netlib " + mpsName[m]);
                                                                  ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:294:62: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                                             ^
./OsiUnitTests.hpp:285:27: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
      __FILE__, __LINE__, component, testname, severity, expected)) { \
                          ^
OsiNetlibTest.cpp:257:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      if (vecSiP[i]->isProvenOptimal())
          ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:258:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      { double soln = vecSiP[i]->getObjValue();
                      ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:262:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            *vecSiP[i], "netlib " + mpsName[m]);
             ˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:294:62: note: expanded from macro 'OSIUNITTEST_ASSERT_ERROR'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                                             ^
./OsiUnitTests.hpp:285:27: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
      __FILE__, __LINE__, component, testname, severity, expected)) { \
                          ^
OsiNetlibTest.cpp:264:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                std::cout << "  " << siName[i] << " "   << soln << " = " << objValue[m] << ", " << vecSiP[i]->getIterationCount() << " iters; okay" ;
                                     ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:264:98: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                std::cout << "  " << siName[i] << " "   << soln << " = " << objValue[m] << ", " << vecSiP[i]->getIterationCount() << " iters; okay" ;
                                                                                                   ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:265:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                numProbSolved[i]++ ; }
                ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:267:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        timeTaken[i] += timeOfSolution;
        ˜˜˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:271:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cerr << "  " << siName[i] << "; error " ;
                             ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:272:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (vecSiP[i]->isProvenPrimalInfeasible())
            ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:274:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        else if (vecSiP[i]->isIterationLimitReached())
                 ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:276:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        else if (vecSiP[i]->isAbandoned())
                 ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:284:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    for (i = 0 ; i < numSolvers ; i++) delete vecSiP[i] ; }
                                              ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:290:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      << siName[i] << " solved "
         ˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:291:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      << numProbSolved[i] << " out of "
         ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiNetlibTest.cpp:292:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      << numProblems << " and took " << timeTaken[i] << " seconds."
                                        ˜˜˜˜˜˜˜˜˜ ^
54 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiUnitTestUtils.lo OsiUnitTestUtils.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiUnitTestUtils.cpp  -fno-common -DPIC -o OsiUnitTestUtils.o
In file included from OsiUnitTestUtils.cpp:25:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiUnitTestUtils.cpp:27:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
OsiUnitTestUtils.cpp:489:42: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
        if( *endptr != '\0' || verblevel < 0) {
                               ˜˜˜˜˜˜˜˜˜ ^ ˜
11 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSolverInterfaceTest.lo OsiSolverInterfaceTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSolverInterfaceTest.cpp  -fno-common -DPIC -o OsiSolverInterfaceTest.o
In file included from OsiSolverInterfaceTest.cpp:77:
In file included from ../../src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiSolverInterfaceTest.cpp:82:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiSolverInterfaceTest.cpp:84:
../../src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
../../src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from OsiSolverInterfaceTest.cpp:85:
../../src/Osi/OsiPresolve.hpp:167:54: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  { presolveActions_  = (presolveActions_&0xffff0000)|(action&0xffff);}
                      ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../../src/Osi/OsiPresolve.hpp:167:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  { presolveActions_  = (presolveActions_&0xffff0000)|(action&0xffff);}
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverInterfaceTest.cpp:1464:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { if (rowNames[i] != exmip1RowNames[i])
          ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1464:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { if (rowNames[i] != exmip1RowNames[i])
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1467:58: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << exmip1RowNames[i] << "\"." << std::endl; } }
                                                ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1467:99: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << exmip1RowNames[i] << "\"." << std::endl; } }
                                                                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1475:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { if (colNames[j] != exmip1ColNames[j])
          ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1475:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { if (colNames[j] != exmip1ColNames[j])
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1478:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cout << "Column " << j << " is " << colNames[j] << "\" expected \"" << exmip1ColNames[j] << "\"." << std::endl ; } }
                                                 ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1478:100: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        std::cout << "Column " << j << " is " << colNames[j] << "\" expected \"" << exmip1ColNames[j] << "\"." << std::endl ; } }
                                                                                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1536:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { if (rowNames[i] != exmip1RowNames[i])
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1536:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { if (rowNames[i] != exmip1RowNames[i])
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1539:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << exmip1RowNames[i] << "\"." << std::endl ; } }
                                              ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1539:97: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << exmip1RowNames[i] << "\"." << std::endl ; } }
                                                                                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1547:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { if (colNames[j] != exmip1ColNames[j])
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1547:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { if (colNames[j] != exmip1ColNames[j])
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1550:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Column " << j << " is " << colNames[j] << "\" expected \"" << exmip1ColNames[j] << "\"." << std::endl ; } }
                                               ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1550:98: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Column " << j << " is " << colNames[j] << "\" expected \"" << exmip1ColNames[j] << "\"." << std::endl ; } }
                                                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1587:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1RowNames[i+1] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1590:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (rowNames[i] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1593:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                              ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1625:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[j+1] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1628:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (colNames[j] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1631:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Column " << j << " is \"" << colNames[j] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                                 ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1645:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1RowNames[i+1] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1648:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[i-2] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1651:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (rowNames[i] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1654:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Row " << i << " is \"" << rowNames[i]       << "\" expected \"" << expected << "\"." << std::endl ; } }
                                              ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1665:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1RowNames[j+3] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1668:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[j+1] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1671:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (colNames[j] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1674:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Column " << j << " is \"" << colNames[j] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                                 ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1689:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[i] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1690:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (rowNames[i] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1693:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                              ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1704:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1RowNames[j+3] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1707:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[j+1] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1708:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (colNames[j] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1711:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Column " << j << " is \"" << colNames[j] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                                 ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1723:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OSIUNITTEST_ASSERT_WARNING(rowNames[m] == exmip1ObjName, {}, solverName, "testNames full names: objective name");
                             ˜˜˜˜˜˜˜˜ ^
./OsiUnitTests.hpp:301:40: note: expanded from macro 'OSIUNITTEST_ASSERT_WARNING'
  OSIUNITTEST_ASSERT_SEVERITY_EXPECTED(condition,failurecode,component,testname,\
                                       ^
./OsiUnitTests.hpp:284:42: note: expanded from macro 'OSIUNITTEST_ASSERT_SEVERITY_EXPECTED'
  if (!OsiUnitTestAssertSeverityExpected(condition, #condition, \
                                         ^
OsiSolverInterfaceTest.cpp:1728:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[i] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1731:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (rowNames[i] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1734:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Row " << i << " is \"" << rowNames[i] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                              ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1745:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1RowNames[j+3] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1748:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    { expected = exmip1ColNames[j+1] ; }
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
OsiSolverInterfaceTest.cpp:1751:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (colNames[j] != expected)
        ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:1754:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      std::cout << "Column " << j << " is " << colNames[j] << "\" expected \"" << expected << "\"." << std::endl ; } }
                                               ˜˜˜˜˜˜˜˜ ^
OsiSolverInterfaceTest.cpp:2497:17: warning: equality comparison result unused [-Wunused-comparison]
     solverName == "unknown";
     ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
OsiSolverInterfaceTest.cpp:2497:17: note: use '=' to turn this equality comparison into an assignment
     solverName == "unknown";
                ^˜
                =
OsiSolverInterfaceTest.cpp:3496:9: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    m = si->getNumRows() ;
      ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverInterfaceTest.cpp:3497:9: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    n = si->getNumCols() ;
      ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiSolverInterfaceTest.cpp:3527:51: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          { std::cout << "    " << si->getRowName(i) << " [" << i << "]: " << ray[i] << "\t rhs: " << rhs[i] << "\t sense: " << sense[i] << std::endl ; } }
                                   ˜˜             ^
OsiSolverInterfaceTest.cpp:3531:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
            { std::cout << "    " << si->getColName(j) << " [" << j << "]: " << ray[m+j] << std::endl ; } } } }
                                     ˜˜             ^
OsiSolverInterfaceTest.cpp:3552:39: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
              { statj = wsb->getStructStatus(j) ;
                        ˜˜˜                  ^
OsiSolverInterfaceTest.cpp:3586:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      CoinFillN(rA,m,0.0) ;
      ˜˜˜˜˜˜˜˜˜    ^
OsiSolverInterfaceTest.cpp:3591:40: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        { statj = wsb->getStructStatus(j) ;
                  ˜˜˜                  ^
In file included from OsiSolverInterfaceTest.cpp:80:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiSolverInterfaceTest.cpp:80:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
76 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD   -o libOsiCommonTests.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiColCutTest.lo OsiCutsTest.lo OsiRowCutDebuggerTest.lo OsiRowCutTest.lo OsiSimplexAPITest.lo OsiNetlibTest.lo OsiUnitTestUtils.lo OsiSolverInterfaceTest.lo /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    ../Osi/libOsi.la 
mkdir .libs
ar cru .libs/libOsiCommonTests.a  OsiColCutTest.o OsiCutsTest.o OsiRowCutDebuggerTest.o OsiRowCutTest.o OsiSimplexAPITest.o OsiNetlibTest.o OsiUnitTestUtils.o OsiSolverInterfaceTest.o
ranlib .libs/libOsiCommonTests.a
creating libOsiCommonTests.la
(cd .libs && rm -f libOsiCommonTests.la && ln -s ../libOsiCommonTests.la libOsiCommonTests.la)
make[3]: Nothing to be done for `all-am'.
Making all in Clp
Making all in src
make  all-am
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpCholeskyBase.lo ClpCholeskyBase.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpCholeskyBase.cpp  -fno-common -DPIC -o ClpCholeskyBase.o
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpCholeskyBase.cpp:211:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(rowsDropped_, 0, numberRows_);
     ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜
ClpCholeskyBase.cpp:304:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(rowsDropped_, 0, numberRows_);
          ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜
ClpCholeskyBase.cpp:496:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(rowsDropped_, 0, numberRows_);
          ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜
ClpCholeskyBase.cpp:647:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(rowsDropped_, 0, numberRows_);
          ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜
ClpCholeskyBase.cpp:668:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(rowsDropped_, 0, numberRows_);
     ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜
ClpCholeskyBase.cpp:1833:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(count, 0, numberRows_ * sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpCholeskyBase.cpp:2730:30: warning: implicit conversion turns floating-point number into integer: 'const CoinWorkDouble' (aka 'const double') to 'bool' [-Wconversion]
                         if (diagonal[iColumn]) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpCholeskyBase.cpp:2926:39: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
               if (numberRowsDropped_ && 0) {
                                      ^  ˜
ClpCholeskyBase.cpp:2926:39: note: use '&' for a bitwise operation
               if (numberRowsDropped_ && 0) {
                                      ^˜
                                      &
ClpCholeskyBase.cpp:2926:39: note: remove constant to silence this warning
               if (numberRowsDropped_ && 0) {
                                     ˜^˜˜˜
ClpCholeskyBase.cpp:3541:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(dropped, 0, nDense * sizeof(int));
                             ^˜˜˜˜˜ ˜
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<char>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpCholeskyBase.cpp:93:21: note: in instantiation of function template specialization 'ClpCopyOfArray<char>' requested here
     rowsDropped_ = ClpCopyOfArray(rhs.rowsDropped_, numberRows_);
                    ^
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpCholeskyBase.cpp:94:24: note: in instantiation of function template specialization 'ClpCopyOfArray<int>' requested here
     permuteInverse_ = ClpCopyOfArray(rhs.permuteInverse_, numberRows_);
                       ^
In file included from ClpCholeskyBase.cpp:29:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpCholeskyBase.cpp:99:22: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     sparseFactor_ = ClpCopyOfArray(rhs.sparseFactor_, rhs.sizeFactor_);
                     ^
In file included from ClpCholeskyBase.cpp:32:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, int, CoinFirstLess_2<int, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpCholeskyBase.cpp:766:11: note: in instantiation of function template specialization 'CoinSort_2<int, int>' requested here
          CoinSort_2(count, count + numberRows_, permute_);
          ^
30 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpCholeskyDense.lo ClpCholeskyDense.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpCholeskyDense.cpp  -fno-common -DPIC -o ClpCholeskyDense.o
In file included from ClpCholeskyDense.cpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpCholeskyDense.cpp:12:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpCholeskyDense.cpp:12:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpCholeskyDense.cpp:12:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpCholeskyDense.cpp:113:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(rowsDropped_, 0, numberRows_);
          ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜
ClpCholeskyDense.cpp:663:15: warning: implicit conversion turns floating-point number into integer: 'longDouble' (aka 'double') to 'bool' [-Wconversion]
          if (diagonal_[i]) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
19 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpConstraint.lo ClpConstraint.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpConstraint.cpp  -fno-common -DPIC -o ClpConstraint.o
In file included from ClpConstraint.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpConstraint.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpConstraint.cpp:7:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpConstraint.cpp:7:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpConstraintLinear.lo ClpConstraintLinear.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpConstraintLinear.cpp  -fno-common -DPIC -o ClpConstraintLinear.o
In file included from ClpConstraintLinear.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpConstraintLinear.cpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpConstraintLinear.cpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpConstraintLinear.cpp:9:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpConstraintLinear.cpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpConstraintLinear.cpp:154:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(deleted, 0, numberColumns_ * sizeof(char));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpConstraintLinear.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpConstraintLinear.cpp:41:16: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
     column_ = CoinCopyOfArray(column, numberCoefficients_);
               ^
In file included from ClpConstraintLinear.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpConstraintLinear.cpp:42:21: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     coefficient_ = CoinCopyOfArray(coefficient, numberCoefficients_);
                    ^
In file included from ClpConstraintLinear.cpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpConstraintLinear.cpp:43:6: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
     CoinSort_2(column_, column_ + numberCoefficients_, coefficient_);
     ^
24 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpConstraintQuadratic.lo ClpConstraintQuadratic.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpConstraintQuadratic.cpp  -fno-common -DPIC -o ClpConstraintQuadratic.o
In file included from ClpConstraintQuadratic.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpConstraintQuadratic.cpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpConstraintQuadratic.cpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpConstraintQuadratic.cpp:9:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpConstraintQuadratic.cpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpConstraintQuadratic.cpp:48:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(mark, 0, numberQuadraticColumns_);
     ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpConstraintQuadratic.cpp:210:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(deleted, 0, numberColumns_ * sizeof(char));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpConstraintQuadratic.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpConstraintQuadratic.cpp:43:15: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
     start_ = CoinCopyOfArray(start, numberQuadraticColumns + 1);
              ^
In file included from ClpConstraintQuadratic.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpConstraintQuadratic.cpp:46:21: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     coefficient_ = CoinCopyOfArray(coefficient, numberElements);
                    ^
24 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o Clp_C_Interface.lo Clp_C_Interface.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c Clp_C_Interface.cpp  -fno-common -DPIC -o Clp_C_Interface.o
In file included from Clp_C_Interface.cpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Clp_C_Interface.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Clp_C_Interface.cpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Clp_C_Interface.cpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Clp_C_Interface.cpp:390:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     rowNames.reserve(numberRows);
     ˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜
Clp_C_Interface.cpp:398:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     columnNames.reserve(numberColumns);
     ˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜
Clp_C_Interface.cpp:468:55: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     strncpy(array, name.c_str(), maxNumberCharacters - 1);
     ˜˜˜˜˜˜˜                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Clp_C_Interface.cpp:671:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          array = static_cast<double*>(malloc(numberRows*sizeof(double)));
                                              ^˜˜˜˜˜˜˜˜˜˜
Clp_C_Interface.cpp:672:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(array,ray,numberRows*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜
Clp_C_Interface.cpp:688:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          array = static_cast<double*>(malloc(numberColumns*sizeof(double)));
                                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
Clp_C_Interface.cpp:689:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(array,ray,numberColumns*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
24 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpDualRowDantzig.lo ClpDualRowDantzig.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpDualRowDantzig.cpp  -fno-common -DPIC -o ClpDualRowDantzig.o
In file included from ClpDualRowDantzig.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpDualRowDantzig.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpDualRowDantzig.cpp:7:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpDualRowDantzig.cpp:7:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpDualRowDantzig.cpp:9:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
20 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpDualRowPivot.lo ClpDualRowPivot.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpDualRowPivot.cpp  -fno-common -DPIC -o ClpDualRowPivot.o
In file included from ClpDualRowPivot.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpDualRowPivot.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpDualRowPivot.cpp:7:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpDualRowPivot.cpp:7:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpDualRowSteepest.lo ClpDualRowSteepest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpDualRowSteepest.cpp  -fno-common -DPIC -o ClpDualRowSteepest.o
In file included from ClpDualRowSteepest.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpDualRowSteepest.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpDualRowSteepest.cpp:7:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpDualRowSteepest.cpp:7:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpDualRowSteepest.cpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:255:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (infeas[lastPivotRow])
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:267:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (infeas[lastPivotRow])
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:273:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (infeas[lastPivotRow])
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:646:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!alpha) {
              ˜^˜˜˜˜
ClpDualRowSteepest.cpp:713:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iRow])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:729:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iRow])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:735:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iRow])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:763:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iRow])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:779:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iRow])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:785:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iRow])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:796:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (infeas[iRow])
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpDualRowSteepest.cpp:1045:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
       int options=model->specialOptions();
           ˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpDualRowSteepest.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpDualRowSteepest.cpp:55:16: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
               ClpDisjointCopyN(rhs.weights_, number, weights_);
               ^
In file included from ClpDualRowSteepest.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpDualRowSteepest.cpp:73:16: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
               ClpDisjointCopyN(rhs.dubiousWeights_, number, dubiousWeights_);
               ^
34 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpDummyMatrix.lo ClpDummyMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpDummyMatrix.cpp  -fno-common -DPIC -o ClpDummyMatrix.o
In file included from ClpDummyMatrix.cpp:10:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpDummyMatrix.cpp:10:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpDummyMatrix.cpp:10:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpDummyMatrix.cpp:10:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpDummyMatrix.cpp:12:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
20 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpDynamicExampleMatrix.lo ClpDynamicExampleMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpDynamicExampleMatrix.cpp  -fno-common -DPIC -o ClpDynamicExampleMatrix.o
In file included from ClpDynamicExampleMatrix.cpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpDynamicExampleMatrix.cpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpDynamicExampleMatrix.cpp:12:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpDynamicExampleMatrix.cpp:12:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpDynamicExampleMatrix.cpp:12:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpDynamicExampleMatrix.cpp:104:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(dynamicStatus_, 0, maximumGubColumns_);
     ˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicExampleMatrix.cpp:138:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (columnLowerGen_[i]) {
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicExampleMatrix.cpp:162:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(status_,status, numberSets_ * sizeof(char));
                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpDynamicExampleMatrix.cpp:168:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(status_, 0, numberSets_);
          ˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜˜˜
ClpDynamicExampleMatrix.cpp:175:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(dynamicStatusGen_, 0, numberColumns_); // for clarity
     ˜˜˜˜˜˜                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpDynamicExampleMatrix.cpp:12:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpDynamicExampleMatrix.cpp:51:24: note: in instantiation of function template specialization 'ClpCopyOfArray<int>' requested here
     startColumnGen_ = ClpCopyOfArray(rhs.startColumnGen_, numberColumns_ + 1);
                       ^
In file included from ClpDynamicExampleMatrix.cpp:12:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpDynamicExampleMatrix.cpp:54:20: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     elementGen_ = ClpCopyOfArray(rhs.elementGen_, numberElements);;
                   ^
In file included from ClpDynamicExampleMatrix.cpp:12:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<unsigned char>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpDynamicExampleMatrix.cpp:57:26: note: in instantiation of function template specialization 'ClpCopyOfArray<unsigned char>' requested here
     dynamicStatusGen_ = ClpCopyOfArray(rhs.dynamicStatusGen_, numberColumns_);
                         ^
In file included from ClpDynamicExampleMatrix.cpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpDynamicExampleMatrix.cpp:132:11: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
          CoinSort_2(rowGen_ + startColumnGen_[i], rowGen_ + startColumnGen_[i+1], elementGen_ + startColumnGen_[i]);
          ^
29 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpDynamicMatrix.lo ClpDynamicMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpDynamicMatrix.cpp  -fno-common -DPIC -o ClpDynamicMatrix.o
In file included from ClpDynamicMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpDynamicMatrix.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpDynamicMatrix.cpp:96:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     status_ = ClpCopyOfArray(rhs.status_, static_cast<int>(2*numberSets_+4*sizeof(int)));
                                                            ˜^˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:266:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          status_ = ClpCopyOfArray(status, static_cast<int>(2*numberSets_+4*sizeof(int)));
                                                            ˜^˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:270:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          status_ = new unsigned char [2*numberSets_+4*sizeof(int)];
                                       ˜^˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:271:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(status_, 0, numberSets_);
          ˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:278:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(dynamicStatus_, 0, numberGubColumns_); // for clarity
          ˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:363:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          status_ = ClpCopyOfArray(rhs.status_, static_cast<int>(2*numberSets_+4*sizeof(int)));
                                                                 ˜^˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:778:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                           if (value) {
                           ˜˜  ^˜˜˜˜
ClpDynamicMatrix.cpp:807:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (b) {
                                   ˜˜  ^
ClpDynamicMatrix.cpp:1110:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
       memcpy(status_+numberSets_,status_,numberSets_);
       ˜˜˜˜˜˜                             ^˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:1113:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
              dynamicStatus_,maximumGubColumns_);
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:1118:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
       memcpy(status_,status_+numberSets_,numberSets_);
       ˜˜˜˜˜˜                             ^˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:1121:8: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
              maximumGubColumns_);
              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpDynamicMatrix.cpp:1605:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpDynamicMatrix.cpp:1620:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (amount) {
     ˜˜  ^˜˜˜˜˜
In file included from ClpDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpDynamicMatrix.cpp:90:24: note: in instantiation of function template specialization 'ClpCopyOfArray<int>' requested here
     backToPivotRow_ = ClpCopyOfArray(rhs.backToPivotRow_, lastDynamic_);
                       ^
In file included from ClpDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpDynamicMatrix.cpp:94:18: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     lowerSet_ = ClpCopyOfArray(rhs.lowerSet_, numberSets_);
                 ^
In file included from ClpDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<unsigned char>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpDynamicMatrix.cpp:96:16: note: in instantiation of function template specialization 'ClpCopyOfArray<unsigned char>' requested here
     status_ = ClpCopyOfArray(rhs.status_, static_cast<int>(2*numberSets_+4*sizeof(int)));
               ^
In file included from ClpDynamicMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpDynamicMatrix.cpp:193:11: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
          CoinSort_2(row_ + startColumn_[i], row_ + startColumn_[i+1], element_ + startColumn_[i]);
          ^
38 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpEventHandler.lo ClpEventHandler.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpEventHandler.cpp  -fno-common -DPIC -o ClpEventHandler.o
In file included from ClpEventHandler.cpp:8:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpEventHandler.cpp:8:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpEventHandler.cpp:8:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpEventHandler.cpp:8:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpFactorization.lo ClpFactorization.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpFactorization.cpp  -fno-common -DPIC -o ClpFactorization.o
In file included from ClpFactorization.cpp:7:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpFactorization.cpp:7:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpFactorization.cpp:7:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpFactorization.cpp:7:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpFactorization.cpp:7:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpFactorization.cpp:3115:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(temp, 0, numberRows * sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpFactorization.cpp:7:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpFactorization.cpp:2314:21: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
                    ClpDisjointCopyN ( coinFactorizationA_->permute(), useNumberRows , coinFactorizationA_->pivotColumn()  );
                    ^
22 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpGubDynamicMatrix.lo ClpGubDynamicMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpGubDynamicMatrix.cpp  -fno-common -DPIC -o ClpGubDynamicMatrix.o
In file included from ClpGubDynamicMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpGubDynamicMatrix.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpGubDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpGubDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpGubDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpGubDynamicMatrix.cpp:207:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(status_, 0, numberSets_);
          ˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜˜˜
ClpGubDynamicMatrix.cpp:215:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(saveStatus_, 0, numberSets_);
     ˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜˜
ClpGubDynamicMatrix.cpp:217:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(savedKeyVariable_, 0, numberSets_ * sizeof(int));
                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpGubDynamicMatrix.cpp:1044:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(mark, 0, numberColumns);
     ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpGubDynamicMatrix.cpp:1055:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(dynamicStatus_, 0, numberGubColumns_); // for clarity
     ˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpGubDynamicMatrix.cpp:1426:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(mark, 0, numberColumns);
     ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpGubDynamicMatrix.cpp:1748:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpGubDynamicMatrix.cpp:1797:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (b) {
                              ˜˜  ^
ClpGubDynamicMatrix.cpp:1952:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpGubDynamicMatrix.cpp:1973:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpGubDynamicMatrix.cpp:2087:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
In file included from ClpGubDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpGubDynamicMatrix.cpp:66:21: note: in instantiation of function template specialization 'ClpCopyOfArray<int>' requested here
     startColumn_ = ClpCopyOfArray(rhs.startColumn_, numberGubColumns_ + 1);
                    ^
In file included from ClpGubDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpGubDynamicMatrix.cpp:69:17: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     element_ = ClpCopyOfArray(rhs.element_, numberElements);;
                ^
In file included from ClpGubDynamicMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<unsigned char>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpGubDynamicMatrix.cpp:75:23: note: in instantiation of function template specialization 'ClpCopyOfArray<unsigned char>' requested here
     dynamicStatus_ = ClpCopyOfArray(rhs.dynamicStatus_, numberGubColumns_);
                      ^
In file included from ClpGubDynamicMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpGubDynamicMatrix.cpp:119:11: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
          CoinSort_2(row_ + startColumn_[i], row_ + startColumn_[i+1], element_ + startColumn_[i]);
          ^
35 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpGubMatrix.lo ClpGubMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpGubMatrix.cpp  -fno-common -DPIC -o ClpGubMatrix.o
In file included from ClpGubMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpGubMatrix.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpGubMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpGubMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpGubMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpGubMatrix.cpp:234:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(status_, 0, numberSets_);
          ˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜˜˜
ClpGubMatrix.cpp:242:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(saveStatus_, 0, numberSets_);
     ˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜˜
ClpGubMatrix.cpp:244:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(savedKeyVariable_, 0, numberSets_ * sizeof(int));
                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpGubMatrix.cpp:541:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     if (numberColumns * sizeof(double) > 1000000) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpGubMatrix.cpp:839:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpGubMatrix.cpp:864:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpGubMatrix.cpp:950:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!keyValue) {
                             ˜^˜˜˜˜˜˜˜
ClpGubMatrix.cpp:1247:41: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (!array[lastIndex])
                                       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpGubMatrix.cpp:1270:41: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (!array[lastIndex])
                                       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpGubMatrix.cpp:2272:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpGubMatrix.cpp:2392:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpGubMatrix.cpp:2506:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (costChange) {
               ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpGubMatrix.cpp:2527:36: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (!newValue)
                                  ˜^˜˜˜˜˜˜˜
ClpGubMatrix.cpp:2536:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!newValue)
                             ˜^˜˜˜˜˜˜˜
ClpGubMatrix.cpp:2555:41: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (!newValue)
                                       ˜^˜˜˜˜˜˜˜
ClpGubMatrix.cpp:3061:20: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if (columnLower[j] && columnLower[j] > -1.0e20)
                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜
ClpGubMatrix.cpp:3063:20: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if (columnUpper[j] && columnUpper[j] < 1.0e20)
                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜
ClpGubMatrix.cpp:3344:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(mark, 0, numberColumns);
     ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpGubMatrix.cpp:3605:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (b)
                         ˜˜  ^
ClpGubMatrix.cpp:3688:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (oldB)
                              ˜˜  ^˜˜˜
ClpGubMatrix.cpp:3723:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (oldB)
                         ˜˜  ^˜˜˜
ClpGubMatrix.cpp:3757:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (oldB)
                              ˜˜  ^˜˜˜
ClpGubMatrix.cpp:3937:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (newB)
                              ˜˜  ^˜˜˜
ClpGubMatrix.cpp:3967:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (newB)
                         ˜˜  ^˜˜˜
In file included from ClpGubMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpGubMatrix.cpp:76:15: note: in instantiation of function template specialization 'ClpCopyOfArray<int>' requested here
     start_ = ClpCopyOfArray(rhs.start_, numberSets_);
              ^
In file included from ClpGubMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpGubMatrix.cpp:78:15: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     lower_ = ClpCopyOfArray(rhs.lower_, numberSets_);
              ^
In file included from ClpGubMatrix.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<unsigned char>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpGubMatrix.cpp:80:16: note: in instantiation of function template specialization 'ClpCopyOfArray<unsigned char>' requested here
     status_ = ClpCopyOfArray(rhs.status_, numberSets_);
               ^
47 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpHelperFunctions.lo ClpHelperFunctions.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpHelperFunctions.cpp  -fno-common -DPIC -o ClpHelperFunctions.o
In file included from ClpHelperFunctions.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
6 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpInterior.lo ClpInterior.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpInterior.cpp  -fno-common -DPIC -o ClpInterior.o
In file included from ClpInterior.cpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpInterior.cpp:12:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpInterior.cpp:12:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpInterior.cpp:12:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpInterior.cpp:541:10: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
     if (direction)
     ˜˜  ^˜˜˜˜˜˜˜˜
ClpInterior.cpp:546:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(cost_ + numberColumns_, 0, numberRows_ * sizeof(CoinWorkDouble));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpInterior.cpp:675:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(status_, 0, numberRows_ + numberColumns_);
     ˜˜˜˜˜˜             ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpInterior.cpp:779:22: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          } else if (value) {
                 ˜˜  ^˜˜˜˜
ClpInterior.cpp:791:20: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpInterior.cpp:800:39: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          if (lower_[i] > -1.0e100 && lower_[i]) {
                                   ˜˜ ^˜˜˜˜˜˜˜˜
ClpInterior.cpp:807:38: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          if (upper_[i] < 1.0e100 && upper_[i]) {
                                  ˜˜ ^˜˜˜˜˜˜˜˜
ClpInterior.cpp:815:10: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
     if (largestBound)
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpInterior.cpp:831:22: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          } else if (value) {
                 ˜˜  ^˜˜˜˜
ClpInterior.cpp:843:20: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpInterior.cpp:852:39: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          if (lower_[i] > -1.0e100 && lower_[i]) {
                                   ˜˜ ^˜˜˜˜˜˜˜˜
ClpInterior.cpp:859:38: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          if (upper_[i] < 1.0e100 && upper_[i]) {
                                  ˜˜ ^˜˜˜˜˜˜˜˜
ClpInterior.cpp:884:10: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
     if (largestBound)
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpInterior.cpp:12:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpInterior.cpp:369:15: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     lower_ = ClpCopyOfArray(rhs.lower_, numberColumns_ + numberRows_);
              ^
31 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpLinearObjective.lo ClpLinearObjective.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpLinearObjective.cpp  -fno-common -DPIC -o ClpLinearObjective.o
In file included from ClpLinearObjective.cpp:7:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpLinearObjective.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpLinearObjective.cpp:8:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpLinearObjective.cpp:8:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpLinearObjective.cpp:8:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpLinearObjective.cpp:140:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
In file included from ClpLinearObjective.cpp:7:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:221:36: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpLinearObjective.cpp:37:19: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     objective_ = CoinCopyOfArray(objective, numberColumns_, 0.0);
                  ^
In file included from ClpLinearObjective.cpp:7:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpLinearObjective.cpp:47:19: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     objective_ = CoinCopyOfArray(rhs.objective_, numberColumns_);
                  ^
In file included from ClpLinearObjective.cpp:8:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpLinearObjective.cpp:161:6: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
     ClpDisjointCopyN(model->costRegion(1), numberColumns, dj);
     ^
24 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpMatrixBase.lo ClpMatrixBase.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpMatrixBase.cpp  -fno-common -DPIC -o ClpMatrixBase.o
In file included from ClpMatrixBase.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpMatrixBase.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpMatrixBase.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpMatrixBase.cpp:13:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpMatrixBase.cpp:13:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpMatrixBase.cpp:509:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!scaleFactor)
         ˜^˜˜˜˜˜˜˜˜˜˜
In file included from ClpMatrixBase.cpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpMatrixBase.cpp:64:24: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
          rhsOffset_ = ClpCopyOfArray(rhs.rhsOffset_, numberRows);
                       ^
22 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpMessage.lo ClpMessage.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpMessage.cpp  -fno-common -DPIC -o ClpMessage.o
In file included from ClpMessage.cpp:7:
In file included from ./ClpMessage.hpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpModel.lo ClpModel.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpModel.cpp  -fno-common -DPIC -o ClpModel.o
In file included from ClpModel.cpp:40:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpModel.cpp:42:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpModel.cpp:42:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpModel.cpp:43:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpModel.cpp:51:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpModel.cpp:58:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
ClpModel.cpp:263:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
     int saveOptions = specialOptions_;
         ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:265:24: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ = saveOptions;
                     ˜ ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:804:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               specialOptions_ &= ˜65536;
                               ˜˜ ^˜˜˜˜˜
ClpModel.cpp:1000:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ = rhs.specialOptions_ & ˜65536;
                                           ˜ ^˜˜˜˜˜
ClpModel.cpp:1341:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(tempC, 3, newNumberColumns * sizeof(unsigned char));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpModel.cpp:1342:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(tempR, 1, newNumberRows * sizeof(unsigned char));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpModel.cpp:1349:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                            newNumberRows);
                            ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1351:74: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    memset(status_ + numberColumns_, 3, newNumberColumns - numberColumns_);
                    ˜˜˜˜˜˜                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1353:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                            newNumberRows);
                            ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1367:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_.resize(newNumberRows);
               ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1372:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rowNames_[iRow] = name;
                    ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:1378:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_.resize(newNumberColumns);
               ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1384:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    columnNames_[iColumn] = name;
                    ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:1424:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜(1 + 2 + 4 + 8 + 16 + 32); // all except columns changed
                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1526:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rowNames_[k++] = rowNames_[i];
                    ˜˜˜˜˜˜˜˜˜ ˜^˜
ClpModel.cpp:1526:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rowNames_[k++] = rowNames_[i];
                                     ˜˜˜˜˜˜˜˜˜ ^
ClpModel.cpp:1554:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜(1 + 2 + 4 + 8 + 64 + 128 + 256); // all except rows changed
                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1612:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    columnNames_[k++] = columnNames_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜˜ ˜^˜
ClpModel.cpp:1612:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    columnNames_[k++] = columnNames_[i];
                                        ˜˜˜˜˜˜˜˜˜˜˜˜ ^
ClpModel.cpp:1637:22: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    whatsChanged_ &= ˜511; // all changed
                  ˜˜ ^˜˜˜
ClpModel.cpp:1642:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(backRows,0,numberTotal*sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1671:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_[iColumn] = columnNames_[i];
          ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:1671:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_[iColumn] = columnNames_[i];
                                  ˜˜˜˜˜˜˜˜˜˜˜˜ ^
ClpModel.cpp:1702:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_[iRow] = rowNames_[i];
          ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:1702:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_[iRow] = rowNames_[i];
                            ˜˜˜˜˜˜˜˜˜ ^
ClpModel.cpp:1800:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ &= ˜(1 + 2 + 8 + 16 + 32); // all except columns changed
                        ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1842:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_.resize(numberRows_);
               ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1893:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜(1 + 2 + 8 + 16 + 32); // all except columns changed
                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1936:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_.resize(numberRows_);
          ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:1963:30: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                         if (elements[i]) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2274:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ &= ˜(1 + 2 + 4 + 64 + 128 + 256); // all except rows changed
                        ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2326:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_.resize(numberColumns_);
               ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2376:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜(1 + 2 + 4 + 64 + 128 + 256); // all except rows changed
                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2429:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_.resize(numberColumns_);
          ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2459:30: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                         if (elements[i]) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2801:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
         memcpy(array,ray_,numberRows_*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2802:30: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
         memset(array+numberRows_,0,numberColumns_*sizeof(double));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2976:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_.reserve(numberRows_);
               ˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:2984:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_.reserve(numberColumns_);
               ˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3060:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_.reserve(numberRows_);
               ˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3068:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_.reserve(numberColumns_);
               ˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3394:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_.reserve(numberRows_);
          ˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3396:51: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_.push_back(rhs->rowNames_[whichRow[iRow]]);
                                   ˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3397:91: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               maxLength = CoinMax(maxLength, static_cast<unsigned int> (strlen(rowNames_[iRow].c_str())));
                                                                                ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3400:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_.reserve(numberColumns_);
          ˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3402:57: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_.push_back(rhs->columnNames_[whichColumn[iColumn]]);
                                      ˜˜˜               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3403:94: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               maxLength = CoinMax(maxLength, static_cast<unsigned int> (strlen(columnNames_[iColumn].c_str())));
                                                                                ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3482:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     rowNames_.reserve(numberRows_);
     ˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3484:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_.push_back(rowNames[iRow]);
                              ˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3485:86: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          maxLength = CoinMax(maxLength, static_cast<unsigned int> (strlen(rowNames_[iRow].c_str())));
                                                                           ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3488:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     columnNames_.reserve(numberColumns_);
     ˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3490:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_.push_back(columnNames[iColumn]);
                                 ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3491:89: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          maxLength = CoinMax(maxLength, static_cast<unsigned int> (strlen(columnNames_[iColumn].c_str())));
                                                                           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3506:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3523:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     unsigned int maxLength = lengthNames_;
                  ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3526:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_.resize(iRow + 1);
          ˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜^˜˜
ClpModel.cpp:3527:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     rowNames_[iRow] = name;
     ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3543:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3560:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     unsigned int maxLength = lengthNames_;
                  ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3563:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_.resize(iColumn + 1);
          ˜˜˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜^˜˜
ClpModel.cpp:3564:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     columnNames_[iColumn] = name;
     ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3578:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     unsigned int maxLength = lengthNames_;
                  ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3581:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_.resize(numberRows_);
          ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3584:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_[iRow] = rowNames[iRow-first];
          ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3584:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_[iRow] = rowNames[iRow-first];
                            ˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜˜˜˜
ClpModel.cpp:3585:90: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          maxLength = CoinMax(maxLength, static_cast<unsigned int> (strlen(rowNames_[iRow-first].c_str())));
                                                                           ˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜˜˜˜
ClpModel.cpp:3599:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     unsigned int maxLength = lengthNames_;
                  ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3602:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_.resize(numberColumns_);
          ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3605:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_[iColumn] = columnNames[iColumn-first];
          ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3605:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_[iColumn] = columnNames[iColumn-first];
                                  ˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜
ClpModel.cpp:3606:96: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          maxLength = CoinMax(maxLength, static_cast<unsigned int> (strlen(columnNames_[iColumn-first].c_str())));
                                                                           ˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜
ClpModel.cpp:3620:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     unsigned int maxLength = lengthNames_;
                  ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3623:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          rowNames_.resize(numberRows_);
          ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3627:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_[iRow] = rowNames[iRow-first];
               ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3633:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_[iRow] = name;
               ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpModel.cpp:3648:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     unsigned int maxLength = lengthNames_;
                  ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3651:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          columnNames_.resize(numberColumns_);
          ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:3655:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_[iColumn] = columnNames[iColumn-first];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3661:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_[iColumn] = name;
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpModel.cpp:3745:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!objValue) {
                             ˜^˜˜˜˜˜˜˜
ClpModel.cpp:3780:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (objValue) {
                         ˜˜  ^˜˜˜˜˜˜˜
ClpModel.cpp:3982:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ &= ˜(2 + 4 + 8);
                        ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:4231:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜65536;
                     ˜˜ ^˜˜˜˜˜
ClpModel.cpp:4360:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(columnCount, 0, numberColumns_);
          ˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpModel.cpp:4404:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               memset(currentColumnCount, 0, numberColumns_);
               ˜˜˜˜˜˜                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpModel.cpp:49:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from ClpModel.cpp:49:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from ClpModel.cpp:40:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpModel.cpp:807:31: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
               integerType_ = CoinCopyOfArray(rhs.integerType_, numberColumns_);
                              ^
In file included from ClpModel.cpp:42:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpModel.cpp:850:21: note: in instantiation of function template specialization 'ClpDisjointCopyN<char>' requested here
                    ClpDisjointCopyN(rhs.integerType_, numberColumns_, integerType_);
                    ^
In file included from ClpModel.cpp:42:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpModel.cpp:855:21: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
                    ClpDisjointCopyN ( rhs.rowActivity_, numberRows_ ,
                    ^
In file included from ClpModel.cpp:42:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpModel.cpp:882:16: note: in instantiation of function template specialization 'ClpDisjointCopyN<unsigned char>' requested here
               ClpDisjointCopyN( rhs.status_, numberColumns_ + numberRows_, status_);
               ^
113 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpNetworkBasis.lo ClpNetworkBasis.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpNetworkBasis.cpp  -fno-common -DPIC -o ClpNetworkBasis.o
In file included from ClpNetworkBasis.cpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpNetworkBasis.cpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpNetworkBasis.cpp:9:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpNetworkBasis.cpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpNetworkBasis.cpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:713:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (pivotValue) {
                              ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:732:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (pivotValue) {
                              ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:830:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (pivotValue) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:878:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpNetworkBasis.cpp:904:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (pivotValue) {
               ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:938:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpNetworkBasis.cpp:983:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (pivotValue)
               ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:1073:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (pivotValue) {
                    ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpNetworkBasis.cpp:1156:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (pivotValue)
                    ˜˜  ^˜˜˜˜˜˜˜˜˜
29 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpNetworkMatrix.lo ClpNetworkMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpNetworkMatrix.cpp  -fno-common -DPIC -o ClpNetworkMatrix.o
In file included from ClpNetworkMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpNetworkMatrix.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpNetworkMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpNetworkMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpNetworkMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpNetworkMatrix.cpp:233:23: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memset(tempP, 0, numberRows_ * sizeof(CoinBigIndex));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpNetworkMatrix.cpp:234:23: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memset(tempN, 0, numberRows_ * sizeof(CoinBigIndex));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpNetworkMatrix.cpp:286:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpNetworkMatrix.cpp:297:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpNetworkMatrix.cpp:387:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     if (numberColumns * sizeof(double) > 1000000) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpNetworkMatrix.cpp:737:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(which, 0, numberColumns_);
     ˜˜˜˜˜˜           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpNetworkMatrix.cpp:782:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(which, 0, numberRows_ * sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpNetworkMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from ClpNetworkMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from ClpNetworkMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpNetworkMatrix.cpp:84:24: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
          rhsOffset_ = ClpCopyOfArray(rhs.rhsOffset_, numberRows);
                       ^
In file included from ClpNetworkMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpNetworkMatrix.cpp:684:27: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
          int * indices = CoinCopyOfArray(indices_, 2 * numberColumns_);
                          ^
31 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpNonLinearCost.lo ClpNonLinearCost.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpNonLinearCost.cpp  -fno-common -DPIC -o ClpNonLinearCost.o
In file included from ClpNonLinearCost.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpNonLinearCost.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpNonLinearCost.cpp:12:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpNonLinearCost.cpp:12:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpNonLinearCost.cpp:12:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpNonLinearCost.cpp:88:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (cost[iSequence]) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpNonLinearCost.cpp:122:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(offset_, 0, numberTotal * sizeof(int));
                             ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpNonLinearCost.cpp:149:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(infeasible_, 0, ((put + 31) >> 5)*sizeof(unsigned int));
                                  ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
ClpNonLinearCost.cpp:287:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(cost + numberColumns_, 0, numberRows_ * sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpNonLinearCost.cpp:327:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(offset_, 0, numberTotal * sizeof(int));
                        ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpNonLinearCost.cpp:369:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(infeasible_, 0, ((put + 31) >> 5)*sizeof(unsigned int));
                             ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
ClpNonLinearCost.cpp:1948:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(cost_, 0, n * sizeof(double));
                           ^ ˜
In file included from ClpNonLinearCost.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpNonLinearCost.cpp:499:25: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
               bound_ = CoinCopyOfArray(rhs.bound_, numberTotal);
                        ^
In file included from ClpNonLinearCost.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpNonLinearCost.cpp:501:26: note: in instantiation of function template specialization 'CoinCopyOfArray<unsigned char>' requested here
               status_ = CoinCopyOfArray(rhs.status_, numberTotal);
                         ^
29 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpNode.lo ClpNode.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpNode.cpp  -fno-common -DPIC -o ClpNode.o
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpNode.cpp:9:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpNode.cpp:152:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               primalSolution_ = new double [maximumTotal*sizeof(double)];
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpNode.cpp:153:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               dualSolution_ = new double [maximumTotal*sizeof(double)];
                                           ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpNode.cpp:1133:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!value)
         ˜^˜˜˜˜
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:205:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,copySize*sizeof(T));
                                   ^˜˜˜˜˜˜˜˜
ClpNode.cpp:100:21: note: in instantiation of function template specialization 'CoinCopyOfArrayPartial<unsigned char>' requested here
          status_ = CoinCopyOfArrayPartial(model->statusArray(), maximumTotal, numberTotal);
                    ^
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:205:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,copySize*sizeof(T));
                                   ^˜˜˜˜˜˜˜˜
ClpNode.cpp:101:29: note: in instantiation of function template specialization 'CoinCopyOfArrayPartial<double>' requested here
          primalSolution_ = CoinCopyOfArrayPartial(model->solutionRegion(), maximumTotal, numberTotal);
                            ^
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:205:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,copySize*sizeof(T));
                                   ^˜˜˜˜˜˜˜˜
ClpNode.cpp:103:29: note: in instantiation of function template specialization 'CoinCopyOfArrayPartial<int>' requested here
          pivotVariables_ = CoinCopyOfArrayPartial(model->pivotVariable(), maximumRows_, numberRows);
                            ^
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpNode.cpp:925:20: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     downPseudo_ = CoinCopyOfArray(down, number);
                   ^
In file included from ClpNode.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpNode.cpp:927:18: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
     priority_ = CoinCopyOfArray(priority, number);
                 ^
28 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpObjective.lo ClpObjective.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpObjective.cpp  -fno-common -DPIC -o ClpObjective.o
In file included from ClpObjective.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpObjective.cpp:7:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpObjective.cpp:7:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpObjective.cpp:7:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPackedMatrix.lo ClpPackedMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPackedMatrix.cpp  -fno-common -DPIC -o ClpPackedMatrix.o
In file included from ClpPackedMatrix.cpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPackedMatrix.cpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpPackedMatrix.cpp:15:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPackedMatrix.cpp:15:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPackedMatrix.cpp:15:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPackedMatrix.cpp:291:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:306:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:385:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:401:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:481:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value)
                    ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:567:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value)
               ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:616:10: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     if (numberActiveColumns_ * sizeof(double) > 1000000) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPackedMatrix.cpp:1313:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (array[iColumn])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:1745:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:2038:10: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     if (numberActiveColumns_ * sizeof(double) > 1000000) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPackedMatrix.cpp:2088:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!scaleFactor)
         ˜^˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:2375:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!scaleFactor)
         ˜^˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:2537:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:2557:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:3675:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memset(usedRow, 0, numberRows);
          ˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:3988:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:4002:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpPackedMatrix.cpp:4159:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!value)
                        ˜^˜˜˜˜
ClpPackedMatrix.cpp:4203:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!value)
                        ˜^˜˜˜˜
ClpPackedMatrix.cpp:4355:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (inValue) {
               ˜˜  ^˜˜˜˜˜˜
ClpPackedMatrix.cpp:4357:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (!outValue)
                     ˜^˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:4917:63: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!matrix_->isColOrdered() || numberOther >= 0 || matrix_->getExtraGap()) {
                                                           ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:5006:26: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                    if (!elementByColumn[j])
                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:5144:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(count_, 0, nRow * sizeof(unsigned short));
                       ^˜˜˜ ˜
ClpPackedMatrix.cpp:5170:36: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                              if (!element[j]) {
                                  ˜^˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:5915:20: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if(!elementByColumn[j])
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:5952:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(block_, 0, numberBlocks_ * sizeof(blockStruct));
                       ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPackedMatrix.cpp:5986:20: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if(!elementByColumn[j])
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:6001:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if(value) {
                         ˜˜ ^˜˜˜˜
ClpPackedMatrix.cpp:6012:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if(value) {
                         ˜˜ ^˜˜˜˜
ClpPackedMatrix.cpp:6195:20: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if(!elementByColumn[j])
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPackedMatrix.cpp:6442:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!scaleFactor)
         ˜^˜˜˜˜˜˜˜˜˜˜
In file included from ClpPackedMatrix.cpp:15:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpPackedMatrix.cpp:87:24: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
          rhsOffset_ = ClpCopyOfArray(rhs.rhsOffset_, numberRows);
                       ^
In file included from ClpPackedMatrix.cpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpPackedMatrix.cpp:5203:21: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
          offset_ = CoinCopyOfArray(rhs.offset_, numberBlocks_ + 1);
                    ^
In file included from ClpPackedMatrix.cpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpPackedMatrix.cpp:5205:20: note: in instantiation of function template specialization 'CoinCopyOfArray<unsigned short>' requested here
          count_ = CoinCopyOfArray(rhs.count_, nRow);
                   ^
In file included from ClpPackedMatrix.cpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpPackedMatrix.cpp:5210:19: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
          work_ = CoinCopyOfArray(rhs.work_, sizeWork);
                  ^
In file included from ClpPackedMatrix.cpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpPackedMatrix.cpp:6051:20: note: in instantiation of function template specialization 'CoinCopyOfArray<blockStruct>' requested here
          block_ = CoinCopyOfArray(rhs.block_, numberBlocks_);
                   ^
57 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPlusMinusOneMatrix.lo ClpPlusMinusOneMatrix.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPlusMinusOneMatrix.cpp  -fno-common -DPIC -o ClpPlusMinusOneMatrix.o
In file included from ClpPlusMinusOneMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPlusMinusOneMatrix.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpPlusMinusOneMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPlusMinusOneMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPlusMinusOneMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:408:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(tempP, 0, numberMinor * sizeof(CoinBigIndex));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:409:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(tempN, 0, numberMinor * sizeof(CoinBigIndex));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:474:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpPlusMinusOneMatrix.cpp:589:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     if (numberColumns * sizeof(double) > 1000000) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:825:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                   if (value) {
                   ˜˜  ^˜˜˜˜
ClpPlusMinusOneMatrix.cpp:1016:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (value2) {
                 ˜˜  ^˜˜˜˜˜
ClpPlusMinusOneMatrix.cpp:1027:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (value2) {
                 ˜˜  ^˜˜˜˜˜
ClpPlusMinusOneMatrix.cpp:1340:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(which, 0, numberColumns_ * sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:1401:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(which, 0, numberRows_ * sizeof(int));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:1629:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(countPositive, 0, numberColumns_ * sizeof(int));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:1631:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(countNegative, 0, numberColumns_ * sizeof(int));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:1911:10: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     if (numberColumns_ * sizeof(double) > 1000000) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPlusMinusOneMatrix.cpp:1953:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!scaleFactor)
         ˜^˜˜˜˜˜˜˜˜˜˜
ClpPlusMinusOneMatrix.cpp:2091:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!scaleFactor)
         ˜^˜˜˜˜˜˜˜˜˜˜
In file included from ClpPlusMinusOneMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from ClpPlusMinusOneMatrix.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from ClpPlusMinusOneMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpPlusMinusOneMatrix.cpp:87:24: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
          rhsOffset_ = ClpCopyOfArray(rhs.rhsOffset_, numberRows);
                       ^
In file included from ClpPlusMinusOneMatrix.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpPlusMinusOneMatrix.cpp:110:23: note: in instantiation of function template specialization 'ClpCopyOfArray<int>' requested here
     startPositive_ = ClpCopyOfArray(startPositive, numberMajor + 1);
                      ^
ClpPlusMinusOneMatrix.cpp:459:13: warning: unused variable 'doPlusOnes' [-Wunused-variable]
static bool doPlusOnes=true;
            ^
39 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPredictorCorrector.lo ClpPredictorCorrector.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPredictorCorrector.cpp  -fno-common -DPIC -o ClpPredictorCorrector.o
In file included from ClpPredictorCorrector.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPredictorCorrector.cpp:16:
In file included from ./ClpPredictorCorrector.hpp:14:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPredictorCorrector.cpp:16:
In file included from ./ClpPredictorCorrector.hpp:14:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPredictorCorrector.cpp:16:
In file included from ./ClpPredictorCorrector.hpp:14:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPredictorCorrector.cpp:1904:11: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
     if (!maximumObjective) {
         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPredictorCorrector.cpp:2502:15: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
          if (delta_ || dualR_) {
              ^˜˜˜˜˜ ˜˜
ClpPredictorCorrector.cpp:3593:10: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
     if (quadraticOffset) {
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPredictorCorrector.cpp:3604:10: warning: implicit conversion turns floating-point number into integer: 'CoinWorkDouble' (aka 'double') to 'bool' [-Wconversion]
     if (maximumDJInfeasibility) {
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpPredictorCorrector.cpp:16:
In file included from ./ClpPredictorCorrector.hpp:14:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpPredictorCorrector.cpp:3771:33: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     CoinWorkDouble * dualNew = ClpCopyOfArray(dualArray, numberRows_);
                                ^
22 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPdco.lo ClpPdco.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPdco.cpp  -fno-common -DPIC -o ClpPdco.o
In file included from ClpPdco.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDenseVector.hpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPdco.cpp:20:
In file included from ./ClpPdco.hpp:14:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPdco.cpp:20:
In file included from ./ClpPdco.hpp:14:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPdco.cpp:20:
In file included from ./ClpPdco.hpp:14:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPdco.cpp:632:39: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                      show, info, dy , &istop, &itncg, &outfo, precon, Pr);
                                      ^˜˜˜
ClpPdco.cpp:994:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     int *low_ = (int *)malloc(numberColumns_ * sizeof(int)) ;
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
19 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPdcoBase.lo ClpPdcoBase.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPdcoBase.cpp  -fno-common -DPIC -o ClpPdcoBase.o
In file included from ClpPdcoBase.cpp:10:
In file included from ./ClpPdcoBase.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDenseVector.hpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPdcoBase.cpp:11:
In file included from ./ClpPdco.hpp:14:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPdcoBase.cpp:11:
In file included from ./ClpPdco.hpp:14:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPdcoBase.cpp:11:
In file included from ./ClpPdco.hpp:14:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpLsqr.lo ClpLsqr.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpLsqr.cpp  -fno-common -DPIC -o ClpLsqr.o
In file included from ClpLsqr.cpp:6:
In file included from ./ClpLsqr.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDenseVector.hpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpLsqr.cpp:6:
In file included from ./ClpLsqr.hpp:11:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpLsqr.cpp:6:
In file included from ./ClpLsqr.hpp:11:
In file included from ./ClpInterior.hpp:20:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpLsqr.cpp:6:
In file included from ./ClpLsqr.hpp:11:
In file included from ./ClpInterior.hpp:22:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpLsqr.cpp:6:
In file included from ./ClpLsqr.hpp:11:
In file included from ./ClpInterior.hpp:20:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpLsqr.cpp:376:15: note: in instantiation of function template specialization 'ClpCopyOfArray<double>' requested here
     diag1_ = ClpCopyOfArray(rhs.diag1_, nrows_);
              ^
18 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPresolve.lo ClpPresolve.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPresolve.cpp  -fno-common -DPIC -o ClpPresolve.o
In file included from ClpPresolve.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPresolve.cpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPresolve.cpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPresolve.cpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpPresolve.cpp:28:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:303:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(originalModel_->primalRowSolution(), 0, nrows_ * sizeof(double));
                                                    ^˜˜˜˜˜ ˜
ClpPresolve.cpp:568:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!cost[icol]) {
            ˜^˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:921:6: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     printProgress('A',0);
     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:924:6: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     printProgress('B',0);
     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:996:9: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               printProgress('C',0);
               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1011:6: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
            printProgress('D',0);
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1022:9: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               printProgress('E',0);
               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1031:8: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
              printProgress('l',0);
              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1059:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               if ((presolveActions_ & 0x80000000) != 0)
                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1098:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('F',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1107:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('J',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1115:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('G',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1123:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('H',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1130:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('I',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1139:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('K',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1148:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('L',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1253:5: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                         printProgress('M',iLoop+1);
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1269:10: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                              printProgress('N',iLoop+1);
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1287:7: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                    printProgress('O',iLoop+1);
                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1300:7: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                    printProgress('P',iLoop+1);
                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1311:7: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                    printProgress('Q',iLoop+1);
                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1349:7: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                    printProgress('R',iLoop+1);
                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1388:8: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
       printProgress('Z',0);
       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:883:34: note: expanded from macro 'printProgress'
#define printProgress(x,y) {if ((presolveActions_ & 0x80000000) != 0)   \
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:1448:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rsol, 0, nrows * sizeof(double));
                          ^˜˜˜˜ ˜
ClpPresolve.cpp:1764:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(rowChanged_, 0, nrows_);
     ˜˜˜˜˜˜                 ^˜˜˜˜˜
ClpPresolve.cpp:1766:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(colChanged_, 0, ncols_);
     ˜˜˜˜˜˜                 ^˜˜˜˜˜
ClpPresolve.cpp:1861:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (nonLinearValue) {
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:2088:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(cdone_, -1, ncols0_);
     ˜˜˜˜˜˜             ^˜˜˜˜˜˜
ClpPresolve.cpp:2089:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(rdone_, -1, nrows0_);
     ˜˜˜˜˜˜             ^˜˜˜˜˜˜
ClpPresolve.cpp:2179:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rowObjective_, 0, nrows_ * sizeof(double));
                                   ^˜˜˜˜˜ ˜
ClpPresolve.cpp:2246:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowObjective_, 0, nrows_ * sizeof(double));
                                        ^˜˜˜˜˜ ˜
ClpPresolve.cpp:2248:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          if ((presolveActions_ & 0x80000000) != 0)
               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpPresolve.cpp:2265:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(acts, 0, nrows * sizeof(double));
                               ^˜˜˜˜ ˜
ClpPresolve.cpp:2392:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    memset(mark, 0, ncols_);
                    ˜˜˜˜˜˜          ^˜˜˜˜˜
ClpPresolve.cpp:2438:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rowNames.reserve(nrowsNow);
                    ˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜
ClpPresolve.cpp:2446:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    columnNames.reserve(ncolsNow);
                    ˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜
ClpPresolve.cpp:2469:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (rowObjective_[iRow])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPresolve.cpp:2481:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               if ((prob.presolveOptions_ & 0x80000000) == 0 && information) {
                    ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpPresolve.cpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpPresolve.cpp:1668:6: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
     ClpDisjointCopyN(si->getColLower(), ncols, clo_);
     ^
In file included from ClpPresolve.cpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpPresolve.cpp:1777:6: note: in instantiation of function template specialization 'ClpDisjointCopyN<int>' requested here
     ClpDisjointCopyN(m->getVectorLengths(), ncols_,  hincol_);
     ^
59 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPrimalColumnDantzig.lo ClpPrimalColumnDantzig.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPrimalColumnDantzig.cpp  -fno-common -DPIC -o ClpPrimalColumnDantzig.o
In file included from ClpPrimalColumnDantzig.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPrimalColumnDantzig.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpPrimalColumnDantzig.cpp:12:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPrimalColumnDantzig.cpp:12:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPrimalColumnDantzig.cpp:12:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
20 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPrimalColumnPivot.lo ClpPrimalColumnPivot.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPrimalColumnPivot.cpp  -fno-common -DPIC -o ClpPrimalColumnPivot.o
In file included from ClpPrimalColumnPivot.cpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPrimalColumnPivot.cpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPrimalColumnPivot.cpp:8:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPrimalColumnPivot.cpp:8:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpPrimalColumnSteepest.lo ClpPrimalColumnSteepest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpPrimalColumnSteepest.cpp  -fno-common -DPIC -o ClpPrimalColumnSteepest.o
In file included from ClpPrimalColumnSteepest.cpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpPrimalColumnSteepest.cpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpPrimalColumnSteepest.cpp:8:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpPrimalColumnSteepest.cpp:8:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpPrimalColumnSteepest.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:344:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[sequenceOut])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:355:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[sequenceOut])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:366:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[sequenceOut])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:483:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (infeas[i]) {
               ˜˜  ^˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:675:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence+addSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:692:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:709:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:811:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence+addSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:835:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:859:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:911:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:929:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:947:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1084:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence+addSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1123:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1162:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1205:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1216:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1227:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[iSequence])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1333:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence+addSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1350:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1367:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1545:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence+addSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1562:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1579:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (infeas[iSequence])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:1768:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!scaleFactor)
              ˜^˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2182:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2193:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2204:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2235:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2246:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2257:45: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                        if (infeas[iSequence+addSequence])
                                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2267:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2278:45: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                        if (infeas[iSequence+addSequence])
                                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2316:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[sequenceOut])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2327:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[sequenceOut])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2338:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (infeas[sequenceOut])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2381:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2392:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2403:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2431:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2442:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2453:45: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                        if (infeas[iSequence+addSequence])
                                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2463:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (infeas[iSequence+addSequence])
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2474:45: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                        if (infeas[iSequence+addSequence])
                                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:2879:56: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
       if (weights_[sequenceIn]==(mode_!=1) ? 1.0 : 1.0+ADD_ONE)
       ˜˜                                           ˜˜˜^˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:3025:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (work[iRow])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:3294:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!newWork[pivotRow] && devex_ > 0.0)
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpPrimalColumnSteepest.cpp:3360:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!newWork[pivotRow] && devex_ > 0.0)
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpPrimalColumnSteepest.cpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpPrimalColumnSteepest.cpp:75:34: note: in instantiation of function template specialization 'CoinCopyOfArray<unsigned int>' requested here
                    reference_ = CoinCopyOfArray(rhs.reference_, (number + 31) >> 5);
                                 ^
In file included from ClpPrimalColumnSteepest.cpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpPrimalColumnSteepest.cpp:2943:37: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
                    savedWeights_ = CoinCopyOfArray(weights_, numberRows + numberColumns);
                                    ^
In file included from ClpPrimalColumnSteepest.cpp:9:
./ClpPrimalColumnSteepest.hpp:241:10: warning: private field 'lastRectified_' is not used [-Wunused-private-field]
     int lastRectified_;
         ^
72 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpQuadraticObjective.lo ClpQuadraticObjective.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpQuadraticObjective.cpp  -fno-common -DPIC -o ClpQuadraticObjective.o
In file included from ClpQuadraticObjective.cpp:7:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpQuadraticObjective.cpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpQuadraticObjective.cpp:9:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpQuadraticObjective.cpp:9:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpQuadraticObjective.cpp:9:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:50:74: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(objective_ + numberColumns_, 0, (numberExtendedColumns_ - numberColumns_)*sizeof(double));
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:53:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(objective_, 0, numberExtendedColumns_ * sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:329:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                         memset(gradient_, 0, numberExtendedColumns_ * sizeof(double));
                                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:409:83: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(gradient_ + numberColumns_, 0, (numberExtendedColumns_ - numberColumns_)*sizeof(double));
                                                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:420:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(gradient_, 0, numberExtendedColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:550:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(deleted, 0, numberColumns_ * sizeof(char));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:577:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(deleted, 0, numberColumns_ * sizeof(char));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:625:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(objective_ + numberColumns_, 0, (numberExtended - numberColumns_)*sizeof(double));
                                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:633:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(gradient_ + numberColumns_, 0, (numberExtended - numberColumns_)*sizeof(double));
                                                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpQuadraticObjective.cpp:688:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpQuadraticObjective.cpp:827:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (direction)
          ˜˜  ^˜˜˜˜˜˜˜˜
ClpQuadraticObjective.cpp:972:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (direction)
          ˜˜  ^˜˜˜˜˜˜˜˜
In file included from ClpQuadraticObjective.cpp:9:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpQuadraticObjective.cpp:707:6: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
     ClpDisjointCopyN(costNow, numberColumns, dj);
     ^
33 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSimplex.lo ClpSimplex.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSimplex.cpp  -fno-common -DPIC -o ClpSimplex.o
In file included from ClpSimplex.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSimplex.cpp:18:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSimplex.cpp:18:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSimplex.cpp:18:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSimplex.cpp:19:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpSimplex.cpp:31:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
ClpSimplex.cpp:272:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (solution[iColumn])
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:281:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (solution[i]) {
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:430:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (solution[iColumn])
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:439:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (solution[i]) {
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:496:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(dual_, 0, numberRows_ * sizeof(double));
                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:567:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rowActivityWork_, 0, numberRows_ * sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:763:4: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
         (oldLargestDualError||oldLargestPrimalError)) {
          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:763:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
         (oldLargestDualError||oldLargestPrimalError)) {
                             ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:767:5: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
           nonLinearCost_->sumInfeasibilities()) {
           ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:827:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
           while( !sumOfRelaxedPrimalInfeasibilities_&&
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:876:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if( !sumOfRelaxedPrimalInfeasibilities_)
                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:925:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplex.cpp:941:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1087:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1103:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1161:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1174:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1326:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1341:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpSimplex.cpp:1473:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(rowActivityWork_, 0, numberRows_ * sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:3349:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               memset(newStatus + numberOld, 0, numberExtraRows_);
               ˜˜˜˜˜˜                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:3514:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value && columnLower_[i] != columnUpper_[i]) {
                             ^˜˜˜˜ ˜˜
ClpSimplex.cpp:3548:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (largestObj) {
                    ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:3689:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(rowObjectiveWork_, 0, numberRows_ * sizeof(double));
                                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:3703:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(rowObjectiveWork_, 0, numberRows_ * sizeof(double));
                                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:3905:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (direction)
          ˜˜  ^˜˜˜˜˜˜˜˜
ClpSimplex.cpp:4484:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowObjectiveWork_, 0, numberRows_ * sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:4498:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowObjectiveWork_, 0, numberRows_ * sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:5036:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (factor) {
     ˜˜  ^˜˜˜˜˜
ClpSimplex.cpp:5727:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(reducedCost_, 0, numberColumns_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:5790:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplex.cpp:5831:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (value) {
                              ˜˜  ^˜˜˜˜
ClpSimplex.cpp:5856:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memcpy(rowLower_, saveLower, numberRows_ * sizeof(double));
                                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:5857:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memcpy(rowUpper_, saveUpper, numberRows_ * sizeof(double));
                                                 ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:5903:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
In file included from ClpSimplex.cpp:6199:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:6478:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int size = static_cast<int>((1+4*(numberRows_+numberColumns_))*sizeof(double));
                               ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:6480:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  size += static_cast<int>(2*numberColumns_*sizeof(double));
                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6481:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  size += static_cast<int>((1+4*numberRows_+2*numberColumns_)*sizeof(int));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:6731:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          numberWritten = fwrite(array, sizeof(double), length, fp);
                          ˜˜˜˜˜˜                        ^˜˜˜˜˜
ClpSimplex.cpp:6836:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               length = numberRows_ + numberColumns_;
                      ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6857:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    strcpy(put, rowNames_[i].c_str());
                                ˜˜˜˜˜˜˜˜˜ ^
ClpSimplex.cpp:6860:59: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberWritten = fwrite(array, lengthNames_ + 1, numberRows_, fp);
                               ˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ClpSimplex.cpp:6860:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberWritten = fwrite(array, lengthNames_ + 1, numberRows_, fp);
                               ˜˜˜˜˜˜                          ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6867:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    strcpy(put, columnNames_[i].c_str());
                                ˜˜˜˜˜˜˜˜˜˜˜˜ ^
ClpSimplex.cpp:6870:59: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberWritten = fwrite(array, lengthNames_ + 1, numberColumns_, fp);
                               ˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ClpSimplex.cpp:6870:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberWritten = fwrite(array, lengthNames_ + 1, numberColumns_, fp);
                               ˜˜˜˜˜˜                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6880:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberWritten = fwrite(integerType_, 1, numberColumns_, fp);
                               ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6893:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                   + matrix_->getVectorLengths()[numberColumns_-1];
                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6906:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                                 sizeof(int), numberColumns_ + 1, fp);
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ClpSimplex.cpp:6910:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                                 sizeof(int), numberColumns_, fp);
                                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:6933:53: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          numberRead = fread(array, sizeof(double), length, fp);
                       ˜˜˜˜˜                        ^˜˜˜˜˜
ClpSimplex.cpp:7002:47: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    numberRead = fread(array, length, 1, fp);
                                 ˜˜˜˜˜        ^˜˜˜˜˜
ClpSimplex.cpp:7060:58: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberRead = fread(status_, sizeof(char), length, fp);
                            ˜˜˜˜˜                        ^˜˜˜˜˜
ClpSimplex.cpp:7069:55: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberRead = fread(array, lengthNames_ + 1, numberRows_, fp);
                            ˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ClpSimplex.cpp:7069:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberRead = fread(array, lengthNames_ + 1, numberRows_, fp);
                            ˜˜˜˜˜                          ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7073:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               rowNames_.resize(numberRows_);
               ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7079:55: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberRead = fread(array, lengthNames_ + 1, numberColumns_, fp);
                            ˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ClpSimplex.cpp:7079:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberRead = fread(array, lengthNames_ + 1, numberColumns_, fp);
                            ˜˜˜˜˜                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7083:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               columnNames_.resize(numberColumns_);
               ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7101:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               numberRead = fread(integerType_, 1, numberColumns_, fp);
                            ˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7155:56: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          numberRead = fread(elements, sizeof(double), length, fp);
                       ˜˜˜˜˜                           ^˜˜˜˜˜
ClpSimplex.cpp:7158:52: warning: implicit conversion changes signedness: 'CoinBigIndex' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          numberRead = fread(indices, sizeof(int), length, fp);
                       ˜˜˜˜˜                       ^˜˜˜˜˜
ClpSimplex.cpp:7161:66: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          numberRead = fread(starts, sizeof(int), numberColumns_ + 1, fp);
                       ˜˜˜˜˜                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ClpSimplex.cpp:7164:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          numberRead = fread(lengths, sizeof(int), numberColumns_, fp);
                       ˜˜˜˜˜                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7247:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          } else if (value) {
                 ˜˜  ^˜˜˜˜
ClpSimplex.cpp:7259:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplex.cpp:7268:39: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (lower_[i] > -1.0e100 && lower_[i]) {
                                   ˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7275:38: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (upper_[i] < 1.0e100 && upper_[i]) {
                                  ˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7283:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (largestBound)
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7299:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          } else if (value) {
                 ˜˜  ^˜˜˜˜
ClpSimplex.cpp:7311:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplex.cpp:7320:39: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (lower_[i] > -1.0e100 && lower_[i]) {
                                   ˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7327:38: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (upper_[i] < 1.0e100 && upper_[i]) {
                                  ˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7352:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (largestBound)
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7366:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(status_, 0, (numberColumns_ + numberRows_)*sizeof(char));
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:7598:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     rowNames_.reserve(numberRows_);
     ˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7610:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     columnNames_.reserve(numberColumns_);
     ˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7817:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(rowActivity_,0,numberRows_*sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7819:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(sum,0,numberRows_*sizeof(double));
                 ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:7826:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
ClpSimplex.cpp:7990:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (direction)
          ˜˜  ^˜˜˜˜˜˜˜˜
ClpSimplex.cpp:8054:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset (pi, 0, numberRows_ * sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:8841:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                   memset(array, 0, numberRows_ * sizeof(double));
                                                    ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:8951:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ &= ˜0xffff;
                        ˜˜ ^˜˜˜˜˜˜
ClpSimplex.cpp:9182:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ &= ˜8;
                          ˜˜ ^˜
ClpSimplex.cpp:9212:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜0xffff;
                   ˜˜ ^˜˜˜˜˜˜
ClpSimplex.cpp:9296:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset (sumFixed, 0, numberRows_ * sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:9409:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset (sumFixed, 0, numberRows_ * sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:9809:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜64;
                             ˜˜ ^˜˜
ClpSimplex.cpp:9837:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜16;
                             ˜˜ ^˜˜
ClpSimplex.cpp:9867:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜32;
                             ˜˜ ^˜˜
ClpSimplex.cpp:9900:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜16;
                             ˜˜ ^˜˜
ClpSimplex.cpp:9915:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜32;
                             ˜˜ ^˜˜
ClpSimplex.cpp:9952:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜16;
                             ˜˜ ^˜˜
ClpSimplex.cpp:9957:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜32;
                             ˜˜ ^˜˜
ClpSimplex.cpp:10002:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜128;
                             ˜˜ ^˜˜˜
ClpSimplex.cpp:10036:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜256;
                             ˜˜ ^˜˜˜
ClpSimplex.cpp:10071:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜128;
                             ˜˜ ^˜˜˜
ClpSimplex.cpp:10089:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜256;
                             ˜˜ ^˜˜˜
ClpSimplex.cpp:10126:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜16;
                             ˜˜ ^˜˜
ClpSimplex.cpp:10131:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               whatsChanged_ &= ˜32;
                             ˜˜ ^˜˜
ClpSimplex.cpp:10472:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
         memcpy(array,ray_,numberRows_*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:10473:30: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
         memset(array+numberRows_,0,numberColumns_*sizeof(double));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:10555:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ &= ˜65536;
                          ˜˜ ^˜˜˜˜˜
ClpSimplex.cpp:11081:15: warning: unused variable 'statusWeights' [-Wunused-variable]
          int statusWeights = fastDual2(info);
              ^
ClpSimplex.cpp:11327:29: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          int saveOptions = specialOptions_;
              ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:11328:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ &= ˜65536;
                          ˜˜ ^˜˜˜˜˜
ClpSimplex.cpp:11330:29: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ = saveOptions;
                          ˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:12004:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
     info->saveOptions_ = specialOptions_;
                        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:12068:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
         if (cost_[i]) {
         ˜˜  ^˜˜˜˜˜˜˜
ClpSimplex.cpp:12118:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜524288; // say dont use solution
                     ˜˜ ^˜˜˜˜˜˜
ClpSimplex.cpp:12201:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(reducedCost_, 0, numberColumns_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplex.cpp:12247:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 memset(reducedCost_,0,numberColumns_*sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:12288:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ = info->saveOptions_;
                     ˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:12293:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜0xffff;
                   ˜˜ ^˜˜˜˜˜˜
ClpSimplex.cpp:12385:29: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          int saveOptions = specialOptions_;
              ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplex.cpp:12388:29: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ = saveOptions;
                          ˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from ClpSimplex.cpp:19:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSimplex.cpp:651:16: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
               CoinSort_2(save, save + numberOut, sort);
               ^
In file included from ClpSimplex.cpp:18:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
ClpSimplex.cpp:902:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<double>' requested here
          ClpDisjointCopyN(columnActivities, numberColumns_, columnActivityWork_);
          ^
In file included from ClpSimplex.cpp:18:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:24:
./ClpParameters.hpp:86:57: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reinterpret_cast<void *> (newArray), array, size * sizeof(T));
                                                        ^˜˜˜ ˜
./ClpParameters.hpp:114:11: note: in instantiation of function template specialization 'ClpDisjointCopyN<unsigned char>' requested here
          ClpDisjointCopyN(array, size, arrayNew);
          ^
ClpSimplex.cpp:2587:30: note: in instantiation of function template specialization 'ClpCopyOfArray<unsigned char>' requested here
               saveStatus_ = ClpCopyOfArray( rhs.saveStatus_, numberTotal);
                             ^
In file included from ClpSimplex.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSimplex.cpp:2683:32: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
          perturbationArray_ = CoinCopyOfArray(rhs.perturbationArray_,
                               ^
In file included from ClpSimplex.cpp:19:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, int, CoinFirstLess_2<int, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSimplex.cpp:5923:26: note: in instantiation of function template specialization 'CoinSort_2<int, int>' requested here
                         CoinSort_2(whichRows, whichRows + numberRows_, order);
                         ^
In file included from ClpSimplex.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSimplex.cpp:10573:31: note: in instantiation of function template specialization 'CoinCopyOfArray<unsigned char>' requested here
                    status_ = CoinCopyOfArray(rhs.status_, numberRows_ + numberColumns_);
                              ^
In file included from ClpSimplex.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSimplex.cpp:12476:22: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    pivotVariable_ = CoinCopyOfArray(rhs->pivotVariable_,numberRows_);
                     ^
148 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSimplexDual.lo ClpSimplexDual.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSimplexDual.cpp  -fno-common -DPIC -o ClpSimplexDual.o
In file included from ClpSimplexDual.cpp:99:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSimplexDual.cpp:101:
In file included from ./ClpSimplexDual.hpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSimplexDual.cpp:101:
In file included from ./ClpSimplexDual.hpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSimplexDual.cpp:101:
In file included from ./ClpSimplexDual.hpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSimplexDual.cpp:103:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:577:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜131072;
                     ˜˜ ^˜˜˜˜˜˜
ClpSimplexDual.cpp:1191:55: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         (factorization_->pivots() && saveSumDual))
                                                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:2154:55: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                                  if (value) {
                                                  ˜˜  ^˜˜˜˜
ClpSimplexDual.cpp:3036:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (movement && outputArray) {
                             ^˜˜˜˜˜˜˜ ˜˜
ClpSimplexDual.cpp:3994:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (modification)
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:4020:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (modification)
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:4086:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (modification)
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:4563:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                   memcpy(temp, cost_, nTotal * sizeof(double));
                                                       ^˜˜˜˜˜ ˜
ClpSimplexDual.cpp:4564:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                   memcpy(temp + nTotal, cost_, nTotal * sizeof(double));
                                                                ^˜˜˜˜˜ ˜
ClpSimplexDual.cpp:4587:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                        memcpy(temp, cost_, nTotal * sizeof(double));
                                                            ^˜˜˜˜˜ ˜
ClpSimplexDual.cpp:4588:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                        memcpy(temp + nTotal, cost_, nTotal * sizeof(double));
                                                                     ^˜˜˜˜˜ ˜
ClpSimplexDual.cpp:4595:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                        memcpy(cost_, cost_ + nTotal, nTotal * sizeof(double));
                                                                      ^˜˜˜˜˜ ˜
ClpSimplexDual.cpp:4673:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (sumPrimalInfeasibilities_ && sumPrimalInfeasibilities_ < 1.0e5) {
              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜
ClpSimplexDual.cpp:4724:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(cost_ + nTotal, cost_, nTotal * sizeof(double));
                                        ^˜˜˜˜˜ ˜
ClpSimplexDual.cpp:5474:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (sumDualInfeasibilities_)
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:5756:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value)
               ˜˜  ^˜˜˜˜
ClpSimplexDual.cpp:5836:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplexDual.cpp:5841:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (lo && lo > -1.0e10) {
                   ^˜ ˜˜
ClpSimplexDual.cpp:5844:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!lastValue)
                        ˜^˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:5849:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (up && up < 1.0e10) {
                   ^˜ ˜˜
ClpSimplexDual.cpp:5852:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!lastValue)
                        ˜^˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:5866:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplexDual.cpp:5870:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (lo && lo > -1.0e10) {
                   ^˜ ˜˜
ClpSimplexDual.cpp:5873:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!lastValue2)
                        ˜^˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:5878:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (up && up < 1.0e10) {
                   ^˜ ˜˜
ClpSimplexDual.cpp:5881:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!lastValue2)
                        ˜^˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:5950:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (currentValue) {
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:6036:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplexDual.cpp:6060:32: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    } else if (value) {
                           ˜˜  ^˜˜˜˜
ClpSimplexDual.cpp:6072:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (currentValue) {
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:6088:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (largestZero>1.0*largest&&largest) {
                                ˜˜^˜˜˜˜˜˜
ClpSimplexDual.cpp:6095:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
         if (!obj[iColumn]) {
             ˜^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:6414:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ &= ˜0xffff;
                        ˜˜ ^˜˜˜˜˜˜
ClpSimplexDual.cpp:6633:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜(16384 | 1048576);
                     ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:6646:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜131072;
                     ˜˜ ^˜˜˜˜˜˜
ClpSimplexDual.cpp:6669:29: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          int saveOptions = specialOptions_;
              ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:6707:29: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ = saveOptions;
                          ˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexDual.cpp:6809:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     whatsChanged_ &= ˜0xffff;
                   ˜˜ ^˜˜˜˜˜˜
ClpSimplexDual.cpp:7727:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(lower_, columnLower_, numberColumns_ * sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexDual.cpp:7728:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(upper_, columnUpper_, numberColumns_ * sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexDual.cpp:7729:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(lower_ + numberColumns_, rowLower_, numberRows_ * sizeof(double));
                                                          ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexDual.cpp:7730:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(upper_ + numberColumns_, rowUpper_, numberRows_ * sizeof(double));
                                                          ^˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSimplexDual.cpp:99:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSimplexDual.cpp:4878:47: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
                         saveColumnSolution = CoinCopyOfArray(columnActivityWork_, numberColumns_);
                                              ^
63 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSimplexNonlinear.lo ClpSimplexNonlinear.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSimplexNonlinear.cpp  -fno-common -DPIC -o ClpSimplexNonlinear.o
In file included from ClpSimplexNonlinear.cpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSimplexNonlinear.cpp:11:
In file included from ./ClpSimplexNonlinear.hpp:18:
In file included from ./ClpSimplexPrimal.hpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSimplexNonlinear.cpp:11:
In file included from ./ClpSimplexNonlinear.hpp:18:
In file included from ./ClpSimplexPrimal.hpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSimplexNonlinear.cpp:11:
In file included from ./ClpSimplexNonlinear.hpp:18:
In file included from ./ClpSimplexPrimal.hpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSimplexNonlinear.cpp:14:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpSimplexNonlinear.cpp:18:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:386:71: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    (nonLinearCost_->sumInfeasibilities() > 1.0e-3 || sumOfRelaxedPrimalInfeasibilities_)
                                                                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:1163:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplexNonlinear.cpp:1175:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplexNonlinear.cpp:1191:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value) {
               ˜˜  ^˜˜˜˜
ClpSimplexNonlinear.cpp:1194:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!oldValue) {
                        ˜^˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:2037:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (alpha) {
                    ˜˜  ^˜˜˜˜
ClpSimplexNonlinear.cpp:2113:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!basicTheta && !ordinaryDj) {
              ˜^˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:2217:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (direction) {
                                   ˜˜  ^˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:2685:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rowActivity_, 0, numberRows_ * sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:2725:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memset(rowsIn, 0, numberRows_);
        ˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:2732:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(rowActivity_, 0, numberRows_ * sizeof(double));
                            ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:2842:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rowActivity_, 0, numberRows_ * sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:2901:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memset(rowsIn, 0, numberRows_);
        ˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:2958:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(markNonlinear, 0, numberColumns);
     ˜˜˜˜˜˜                   ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:2982:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
       memset(rowsIn,0,numberRows_);
       ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:3014:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(saveRowSolution, 0, numberRows * sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3101:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rowActivity_, 0, numberRows_ * sizeof(double));
                                  ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3103:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(saveRowSolution, 0, numberRows_ * sizeof(double));
                                     ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3150:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowActivity_, 0, numberRows_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3292:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (alpha) {
                                   ˜˜  ^˜˜˜˜
ClpSimplexNonlinear.cpp:3344:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowActivity_, 0, numberRows_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3487:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(r, 0, numberColumns * sizeof(double));
                       ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3571:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowActivity_, 0, numberRows_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexNonlinear.cpp:3779:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(mark, 0, numberColumns_);
     ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:3838:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    memset(mark, 0, numberColumns_);
                    ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:3970:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (!trueLower[jNon] && columnLower[iColumn] < SMALL_FIX)
                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:3975:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (!trueLower[jNon])
                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:3978:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (!trueLower[jNon] && tryFix &&
                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:4190:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (infValue)
          ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:4192:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (objectiveOffset2)
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexNonlinear.cpp:4253:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (gap)
                    ˜˜  ^˜˜
ClpSimplexNonlinear.cpp:4260:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (gap) {
                    ˜˜  ^˜˜
ClpSimplexNonlinear.cpp:4433:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (difference) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜
In file included from ClpSimplexNonlinear.cpp:14:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSimplexNonlinear.cpp:2723:2: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
        CoinSort_2(weight, weight + numberRows_, sort);
        ^
56 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSimplexOther.lo ClpSimplexOther.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSimplexOther.cpp  -fno-common -DPIC -o ClpSimplexOther.o
In file included from ClpSimplexOther.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSimplexOther.cpp:11:
In file included from ./ClpSimplexOther.hpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSimplexOther.cpp:11:
In file included from ./ClpSimplexOther.hpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSimplexOther.cpp:11:
In file included from ./ClpSimplexOther.hpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSimplexOther.cpp:16:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:69:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     bool inCBC = !dualTolerance_;
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:250:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (!optimizationDirection_)
         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:683:47: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                 columnNames_[iColumn].c_str(),
                                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpSimplexOther.cpp:684:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                 rowNames_[iRow].c_str());
                                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
ClpSimplexOther.cpp:689:47: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                 columnNames_[iColumn].c_str());
                                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpSimplexOther.cpp:713:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                         fprintf(fp, " UL %s", columnNames_[iColumn].c_str());
                                               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpSimplexOther.cpp:724:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                         fprintf(fp, " BS %s", columnNames_[iColumn].c_str());
                                               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpSimplexOther.cpp:787:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(rowActivity_, 0, numberRows_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:896:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (offset) {
          ˜˜  ^˜˜˜˜˜
ClpSimplexOther.cpp:1240:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(rowActivity_, 0, numberRows_ * sizeof(double));
                             ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:1243:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reducedCost_, this->objective(), numberColumns_ * sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:1314:12: warning: unused variable 'statusDJ' [-Wunused-variable]
    Status statusDJ = dualProblem->getColumnStatus(jColumn);
           ^
ClpSimplexOther.cpp:1313:12: warning: unused variable 'statusD' [-Wunused-variable]
    Status statusD = dualProblem->getRowStatus(iColumn);
           ^
ClpSimplexOther.cpp:1355:12: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (!lower[iRow]) {
          ˜^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:1357:19: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      } else if (!upper[iRow]) {
                 ˜^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:1352:12: warning: unused variable 'statusD' [-Wunused-variable]
    Status statusD = dualProblem->getColumnStatus(iRow);
           ^
ClpSimplexOther.cpp:1430:35: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                    if (n == 0 && element[j])
                               ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:1439:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (upper) {
               ˜˜  ^˜˜˜˜
ClpSimplexOther.cpp:2047:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     bool canTryQuick = (reportIncrement) ? true : false;
          ˜˜˜˜˜˜˜˜˜˜˜    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2073:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(chgLower, 0, numberTotal * sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:2075:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(chgUpper, 0, numberTotal * sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:2077:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(chgObjective, 0, numberTotal * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:2220:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!reportIncrement)
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2462:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(lowerRowMove,0,numberRows_*sizeof(double));
                            ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2464:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(upperRowMove,0,numberRows_*sizeof(double));
                            ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2633:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        lowerColumnMove = reinterpret_cast<double *> (malloc(numberColumns_ * sizeof(double)));
                                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:2634:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(lowerColumnMove,0,numberColumns_*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2635:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        upperColumnMove = reinterpret_cast<double *> (malloc(numberColumns_ * sizeof(double)));
                                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:2636:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(upperColumnMove,0,numberColumns_*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2637:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        objectiveMove = reinterpret_cast<double *> (malloc(numberColumns_ * sizeof(double)));
                                                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:2638:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(objectiveMove,0,numberColumns_*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2750:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (lowerRowMove[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2763:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (upperRowMove[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2776:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (lowerColumnMove[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2789:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (upperColumnMove[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2802:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (objectiveMove[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2815:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (detail>0&&!intervalTheta)
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:2845:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (reportIncrement && canTryQuick) {
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜
ClpSimplexOther.cpp:3025:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(lowerChange, 0, numberTotal * sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:3026:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(upperChange, 0, numberTotal * sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:3028:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(lowerChange,lowerChangeBound,numberColumns_*sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3030:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(upperChange,upperChangeBound,numberColumns_*sizeof(double));
                                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3033:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           lowerChangeRhs,numberRows_*sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3036:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           upperChangeRhs,numberRows_*sizeof(double));
                          ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3055:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(saveLower+unscaledChangesOffset,lowerChange,numberTotal*sizeof(double));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3056:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(saveUpper+unscaledChangesOffset,upperChange,numberTotal*sizeof(double));
                                                     ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3060:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (lowerChange[i]) { 
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3063:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (upperChange[i]) { 
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3070:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (lowerChange[i]) { 
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3073:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (upperChange[i]) { 
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3079:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(lowerCopy,columnLower_,numberColumns_*sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3080:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(upperCopy,columnUpper_,numberColumns_*sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3082:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         rowLower_,numberRows_*sizeof(double));
                   ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3084:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         rowUpper_,numberRows_*sizeof(double));
                   ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3089:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(unscaledCopy,columnLower_,numberColumns_*sizeof(double));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3091:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           rowLower_,numberRows_*sizeof(double));
                     ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3093:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(unscaledCopy,columnUpper_,numberColumns_*sizeof(double));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3095:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           rowUpper_,numberRows_*sizeof(double));
                     ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3122:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(saveLower,lower_,numberTotal*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3128:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(saveUpper,upper_,numberTotal*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3171:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        while(sumPrimalInfeasibilities_) {
        ˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3259:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(columnLower_,lowerCopy,numberColumns_*sizeof(double));
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3260:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(columnUpper_,upperCopy,numberColumns_*sizeof(double));
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3262:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           numberRows_*sizeof(double));
           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3264:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           numberRows_*sizeof(double));
           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3269:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(columnLower_,unscaledCopy,numberColumns_*sizeof(double));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3271:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           numberRows_*sizeof(double));
           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3273:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(columnUpper_,unscaledCopy,numberColumns_*sizeof(double));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3275:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           numberRows_*sizeof(double));
           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3374:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(columnLower_,lower_,numberColumns_*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3375:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(rowLower_,lower_+numberColumns_,numberRows_*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3376:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(columnUpper_,upper_,numberColumns_*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3377:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(rowUpper_,upper_+numberColumns_,numberRows_*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3404:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      while(sumPrimalInfeasibilities_) {
      ˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3421:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!moved) {
            ˜^˜˜˜˜
ClpSimplexOther.cpp:3625:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (sumDualInfeasibilities_)
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3704:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(columnLower_,saveLower,numberColumns_*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3705:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(rowLower_,saveLower+numberColumns_,numberRows_*sizeof(double));
                                                        ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3707:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(columnUpper_,saveUpper,numberColumns_*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:3708:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(rowUpper_,saveUpper+numberColumns_,numberRows_*sizeof(double));
                                                        ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4029:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (multiplier) {
                      ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4245:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                          strcpy(in,columnNames_[iSequence].c_str());
                                    ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4251:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                          strcpy(in,rowNames_[iSequence].c_str());
                                    ˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4258:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                          strcpy(out,columnNames_[iSequence].c_str());
                                     ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4264:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                          strcpy(out,rowNames_[iSequence].c_str());
                                     ˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4448:50: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                             if (value) {
                                             ˜˜  ^˜˜˜˜
ClpSimplexOther.cpp:4585:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(lowerSave,columnLower_,numberColumns_*sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4586:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(lowerSave+numberColumns_,rowLower_,numberRows_*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4587:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(upperSave,columnUpper_,numberColumns_*sizeof(double));
                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4588:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(upperSave+numberColumns_,rowUpper_,numberRows_*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4623:36: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      (factorization_->pivots() && sumDualInfeasibilities_))
                                ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:4848:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (change) {
    ˜˜  ^˜˜˜˜˜
ClpSimplexOther.cpp:4873:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (change) {
    ˜˜  ^˜˜˜˜˜
ClpSimplexOther.cpp:4976:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(markDone,0,nToZero*sizeof(int));
                    ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:5621:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (realValue) {
                         ˜˜  ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:5627:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                   if (rowActivity[kRow]) {
                                   ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:5629:46: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                        if (!rowActivity[kRow])
                                            ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:5676:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (realValue) {
                              ˜˜  ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:5748:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(mark, 0, numberRows_);
     ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:5840:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memcpy(reducedCost_, this->objective(), numberColumns_ * sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexOther.cpp:5890:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) 
      ˜˜  ^˜˜˜˜
ClpSimplexOther.cpp:6052:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(temp1,0,numberRows*sizeof(int));
                   ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6508:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(numberKey,0,numberRows*sizeof(int));
                     ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6752:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(numberKey,0,numberRows*sizeof(int));
                     ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6878:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!newValue) {
              ˜^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6891:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (newValue) {
              ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6906:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (newValue) {
          ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6930:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (elementByColumn[j]) {
            ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6952:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (oldValue) {
            ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6966:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!newValue) {
              ˜^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6977:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (array[iRow]) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:6991:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (newValue) {
          ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7160:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(lower_,columnLower_,numberColumns_*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7161:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(lower_+numberColumns_,rowLower_,numberRows_*sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7162:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(upper_,columnUpper_,numberColumns_*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7163:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(upper_+numberColumns_,rowUpper_,numberRows_*sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7164:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(cost_,objective(),numberColumns_*sizeof(double));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7165:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(cost_+numberColumns_,0,numberRows_*sizeof(double));
                                  ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:7926:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (!multiplier) {
                ˜^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8106:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset (rowActivity_,0,numberRows_*sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8118:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (infeasibility) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8150:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (infeasibility) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8220:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset (rowActivity_,0,numberRows_*sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8430:34: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memcpy(temp,where.startStuff,k);
    ˜˜˜˜˜˜                       ^
ClpSimplexOther.cpp:8437:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(put,indices,numberElements*sizeof(int));
                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8438:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  put += numberElements*sizeof(int);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8439:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(put,elements,numberElements*sizeof(double));
                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8440:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  put += numberElements*sizeof(double);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8511:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(where.indices,get,n*sizeof(int));
                             ^˜
ClpSimplexOther.cpp:8512:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    get += n*sizeof(int);
           ^˜
ClpSimplexOther.cpp:8513:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(where.elements,get,n*sizeof(double));
                              ^˜
ClpSimplexOther.cpp:8538:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(element+put,element+start,length*sizeof(double));
                                       ^˜˜˜˜˜˜
ClpSimplexOther.cpp:8539:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(row+put,row+start,length*sizeof(int));
                               ^˜˜˜˜˜˜
ClpSimplexOther.cpp:8569:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(element+put,element+start,n*sizeof(double));
                                       ^˜
ClpSimplexOther.cpp:8570:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(row+put,row+start,n*sizeof(int));
                               ^˜
ClpSimplexOther.cpp:8583:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(element+put,element+start,n*sizeof(double));
                                       ^˜
ClpSimplexOther.cpp:8584:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(row+put,row+start,n*sizeof(int));
                               ^˜
ClpSimplexOther.cpp:8659:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(infoA,'B',numberTotal*sizeof(clpPresolveInfo));
                   ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8660:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(startStuff,'B',maxInfoStuff);
  ˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8666:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(array,0,numberRows_*sizeof(double));
                 ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:8767:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (solValue) {
        ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9013:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (!value) {
                ˜^˜˜˜˜
ClpSimplexOther.cpp:9017:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!valueNew)
                  ˜^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9041:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(row,row+lastElement,numberElements*sizeof(int));
                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9042:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(element,element+lastElement,numberElements*sizeof(double));
                                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9061:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpSimplexOther.cpp:9077:17: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            } else if (value) {
                   ˜˜  ^˜˜˜˜
ClpSimplexOther.cpp:9380:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!cost) {
            ˜^˜˜˜
ClpSimplexOther.cpp:9531:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(infoData,infoA,nActions*sizeof(clpPresolveInfo));
                          ^˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9533:43: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memcpy(info2,startStuff,stuff.putStuff-startStuff);
    ˜˜˜˜˜˜                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9607:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(row,row+lastElement,numberElements*sizeof(int));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9608:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(element,element+lastElement,numberElements*sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9691:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(rowType,0,numberTotal);
  ˜˜˜˜˜˜           ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9700:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(array,0,numberRows_*sizeof(double));
                 ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9725:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(rowActivity_,0,numberRows_*sizeof(double));
                        ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9726:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(dual_,0,numberRows_*sizeof(double));
                 ^˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:9848:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(objectiveX,this->objective(),numberColumns_*sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10175:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(rowX+start,tempIndex,newLength*sizeof(int));
                                    ^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10176:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(elementX+start,tempElement,newLength*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10179:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (solValue) { 
        ˜˜  ^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10247:17: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (newLength&&solValue) {
                     ˜˜^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10313:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(rowX+start,tempIndex,newLength*sizeof(int));
                                    ^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10314:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(elementX+start,tempElement,newLength*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10338:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!value) {
              ˜^˜˜˜˜
ClpSimplexOther.cpp:10342:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (!valueNew)
                ˜^˜˜˜˜˜˜˜
ClpSimplexOther.cpp:10354:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
ClpSimplexOther.cpp:10371:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(rowX+start,tempIndex,length*sizeof(int));
                                    ^˜˜˜˜˜˜
ClpSimplexOther.cpp:10372:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(elementX+start,tempElement,length*sizeof(double));
                                          ^˜˜˜˜˜˜
In file included from ClpSimplexOther.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSimplexOther.cpp:872:26: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     double * rowLower = CoinCopyOfArray(model2->rowLower(), numberRows);
                         ^
In file included from ClpSimplexOther.cpp:16:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, int, CoinFirstLess_2<int, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSimplexOther.cpp:6857:7: note: in instantiation of function template specialization 'CoinSort_2<int, int>' requested here
      CoinSort_2(which2,which2+n,sort);
      ^
In file included from ClpSimplexOther.cpp:16:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSimplexOther.cpp:7809:3: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
  CoinSort_2(weights,weights+numberLook,whichRows);
  ^
191 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSimplexPrimal.lo ClpSimplexPrimal.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSimplexPrimal.cpp  -fno-common -DPIC -o ClpSimplexPrimal.o
In file included from ClpSimplexPrimal.cpp:85:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSimplexPrimal.cpp:86:
In file included from ./ClpSimplexPrimal.hpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSimplexPrimal.cpp:86:
In file included from ./ClpSimplexPrimal.hpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSimplexPrimal.cpp:86:
In file included from ./ClpSimplexPrimal.hpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSimplexPrimal.cpp:87:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:424:34: warning: explicitly assigning a variable of type 'double' to itself [-Wself-assign]
                              dj = dj;
                              ˜˜ ^ ˜˜
ClpSimplexPrimal.cpp:562:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜131072;
                     ˜˜ ^˜˜˜˜˜˜
ClpSimplexPrimal.cpp:975:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!lastSumInfeasibility && sumInfeasibility &&
              ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:975:40: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!lastSumInfeasibility && sumInfeasibility &&
                                    ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:1110:68: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (nonLinearCost_->numberInfeasibilities() > 0 && !progress->initialWeight_ && !ifValuesPass && infeasibilityCost_ == 1.0e10) {
                                                        ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:1124:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rowObjectiveWork_, 0, numberRows_ * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSimplexPrimal.cpp:1320:57: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     bool looksOptimal = (!numberDualInfeasibilities_&&!nonLinearCost_->sumInfeasibilities());
                                                       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:1325:71: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    (nonLinearCost_->sumInfeasibilities() > 1.0e-3 || sumOfRelaxedPrimalInfeasibilities_)
                                                                   ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:1503:44: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!alwaysOptimal || !sumOfRelaxedPrimalInfeasibilities_)
                                          ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:1805:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (cost_[iPivot])
               ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2275:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (difference) {
                              ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2290:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (difference) {
                              ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2321:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (difference) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2336:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (difference) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2414:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (lo && lo < 1.0e20) {
                   ^˜ ˜˜
ClpSimplexPrimal.cpp:2415:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (up && up < 1.0e20) {
                        ^˜ ˜˜
ClpSimplexPrimal.cpp:2423:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (up && up < 1.0e20)
                        ^˜ ˜˜
ClpSimplexPrimal.cpp:2508:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplexPrimal.cpp:2599:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpSimplexPrimal.cpp:2622:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value) {
                         ˜˜  ^˜˜˜˜
ClpSimplexPrimal.cpp:2626:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (solutionValue) {
                              ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2655:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
ClpSimplexPrimal.cpp:2667:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (lowerValue > -1.0e20 && lowerValue)
                                                  ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2680:53: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (upperValue < 1.0e20 && upperValue)
                                                 ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2715:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (lowerValue > -1.0e20 && lowerValue)
                                                  ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2717:53: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (upperValue < 1.0e20 && upperValue)
                                                 ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2719:32: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    } else if (value) {
                           ˜˜  ^˜˜˜˜
ClpSimplexPrimal.cpp:2731:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (lowerValue > -1.0e20 && lowerValue)
                                                  ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2744:53: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (upperValue < 1.0e20 && upperValue)
                                                 ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2793:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (largest || largestZero) {
         ^˜˜˜˜˜˜ ˜˜
ClpSimplexPrimal.cpp:2793:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (largest || largestZero) {
                 ˜˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:2860:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ &= ˜1;
                          ˜˜ ^˜
ClpSimplexPrimal.cpp:2874:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ &= ˜4;
                          ˜˜ ^˜
ClpSimplexPrimal.cpp:3259:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (!nonLinearCost_->sumInfeasibilities())
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSimplexPrimal.cpp:3759:34: warning: explicitly assigning a variable of type 'double' to itself [-Wself-assign]
                              dj = dj;
                              ˜˜ ^ ˜˜
ClpSimplexPrimal.cpp:3909:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     specialOptions_ &= ˜131072;
                     ˜˜ ^˜˜˜˜˜˜
In file included from ClpSimplexPrimal.cpp:87:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSimplexPrimal.cpp:453:26: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
                         CoinSort_2(weight, weight + numberColumns_, whichColumns);
                         ^
In file included from ClpSimplexPrimal.cpp:85:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSimplexPrimal.cpp:3649:26: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
          originalCost = CoinCopyOfArray(cost_, numberColumns_ + numberRows_);
                         ^
58 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSolve.lo ClpSolve.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSolve.cpp  -fno-common -DPIC -o ClpSolve.o
In file included from ClpSolve.cpp:26:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSolve.cpp:29:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpSolve.cpp:29:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSolve.cpp:29:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSolve.cpp:29:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSolve.cpp:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
In file included from ClpSolve.cpp:54:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:138:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return rowBlockNames_[i];}
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:141:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { rowBlockNames_[i] = name;}
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:148:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return columnBlockNames_[i];}
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:151:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { columnBlockNames_[i] = name;}
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
In file included from ClpSolve.cpp:61:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:1268:10: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
            if (obj[i]) {
            ˜˜  ^˜˜˜˜˜
ClpSolve.cpp:1296:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                   if (value&&value!=COIN_DBL_MAX) {
                       ^˜˜˜˜˜˜
ClpSolve.cpp:1303:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                   if (value&&value!=COIN_DBL_MAX) {
                       ^˜˜˜˜˜˜
ClpSolve.cpp:1568:16: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                         } else if (objective[iColumn]) {
                                ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:1591:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value1 && value1 > -1.0e31) {
                             ^˜˜˜˜˜ ˜˜
ClpSolve.cpp:1600:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (value2 && value2 < 1.0e31) {
                             ^˜˜˜˜˜ ˜˜
ClpSolve.cpp:1647:36: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (!largestGap)
                                  ˜^˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:1652:36: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (!largestGap)
                                  ˜^˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:1787:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value1 && value1 > -1.0e31) {
                        ^˜˜˜˜˜ ˜˜
ClpSolve.cpp:1792:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value2 && value2 < 1.0e31) {
                        ^˜˜˜˜˜ ˜˜
ClpSolve.cpp:1860:34: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
               int saveOptions = model2->specialOptions();
                   ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:1862:59: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                    model2->setSpecialOptions(saveOptions | 64); // go as far as possible
                    ˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
ClpSolve.cpp:1968:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value1 && value1 > -1.0e31) {
                        ^˜˜˜˜˜ ˜˜
ClpSolve.cpp:1973:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value2 && value2 < 1.0e31) {
                        ^˜˜˜˜˜ ˜˜
ClpSolve.cpp:2028:36: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (!largestGap)
                                  ˜^˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2036:36: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (!largestGap)
                                  ˜^˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2236:11: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                               numberRows*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2238:11: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                               numberColumns*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2256:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                 numberColumns*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2257:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                          memset(primalRow[i], 0, numberRows * sizeof(double));
                                                  ^˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:2343:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      memcpy(model2->objective(),saveObj,numberColumns*sizeof(double));
                                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2458:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (!columnSolution[iColumn] || fabs(columnSolution[iColumn]) > 1.0e20) {
                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2468:26: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                    if (!columnLower[iColumn]) {
                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2473:33: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                    } else if (!columnUpper[iColumn]) {
                               ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2493:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (columnSolution[jColumn])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2510:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (columnSolution[jColumn])
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2585:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value && value < 1.0e30) {
                   ^˜˜˜˜ ˜˜
ClpSolve.cpp:2590:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (value && value < 1.0e30) {
                   ^˜˜˜˜ ˜˜
ClpSolve.cpp:2610:54: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (lowerValue > -1.0e20 && lowerValue)
                                                  ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2612:53: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (upperValue < 1.0e20 && upperValue)
                                                 ˜˜ ^˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2673:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              columnSolution[iColumn])
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:2829:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
               if (sumArtificials && iPass > 5 && sumArtificials >= lastSumArtificials) {
                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜
ClpSolve.cpp:2889:39: warning: explicitly assigning a variable of type 'double' to itself [-Wself-assign]
                                   dj = dj;
                                   ˜˜ ^ ˜˜
ClpSolve.cpp:2926:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (diffLower)
                    ˜˜  ^˜˜˜˜˜˜˜˜
ClpSolve.cpp:4651:82: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(whichRow + n, coinModel.coinBlock(jBlock)->originalRows(), k * sizeof(int));
                                                                                 ^ ˜
ClpSolve.cpp:4668:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                           k * sizeof(int));
                           ^ ˜
ClpSolve.cpp:5182:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(dual, 0, n * sizeof(double));
                               ^ ˜
ClpSolve.cpp:5279:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      0, (numberMasterRows + numberBlocks)*sizeof(double));
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:5299:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(saveObj, objective2, numberColumns2 * sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:5324:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(objective2, 0, numberColumns2 * sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:5337:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(objective2, saveObj, numberColumns2 * sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:5483:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(sol, 0, numberColumnsGenerated * sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:5489:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(lower, 0, (numberMasterRows + numberBlocks)*sizeof(double));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:5583:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(change,0,numberRows*sizeof(double));
                  ^˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:5598:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (columnLower[iColumn]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:5617:44: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (columnUpper[iColumn]<COIN_DBL_MAX&&columnUpper[iColumn]) {
                                         ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6189:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(problemState,0,numberBlocks*sizeof(int));
                           ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6201:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(save,sub[iBlock].rowLower(),numberRows2*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6203:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(save,sub[iBlock].columnLower(),numberColumns2*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6205:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(save,sub[iBlock].rowUpper(),numberRows2*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6207:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memcpy(save,sub[iBlock].columnUpper(),numberColumns2*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6254:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(save,sub[iBlock].rowLower(),numberRows2*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6256:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(save,sub[iBlock].columnLower(),numberColumns2*sizeof(double));
                                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6258:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(save,sub[iBlock].rowUpper(),numberRows2*sizeof(double));
                                            ^˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6260:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(save,sub[iBlock].columnUpper(),numberColumns2*sizeof(double));
                                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6532:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      0, numberMasterColumns * sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:6573:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                memset(obj,0,originalSubColumns[iBlock]*sizeof(double));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6577:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                memcpy(obj,saveObjective[iBlock],originalSubColumns[iBlock]*sizeof(double));
                                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6588:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(lower2, saveLower, numberRows2 * sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:6591:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(columnLower2,saveColumnLower,numberColumns2*sizeof(double));
                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6594:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(upper2, saveUpper, numberRows2 * sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:6597:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(columnUpper2,saveColumnUpper,numberColumns2*sizeof(double));
                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6647:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(lastMod,rhs,numberRows2*sizeof(double));
                                 ^˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6700:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                       numberColumns2*sizeof(double));
                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6702:21: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                       numberRows2+numberColumns2);
                       ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6749:23: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
                  int saveOptions = sub[iBlock].specialOptions();
                      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6750:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                  sub[iBlock].setSpecialOptions(saveOptions|8192);
                  ˜˜˜                           ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
ClpSolve.cpp:6795:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                  sub[iBlock].setSpecialOptions(saveOptions);
                  ˜˜˜                           ^˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6878:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                memset(obj,0,numberColumns2*sizeof(double));
                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:6881:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                memcpy(obj,saveObj,numberColumns2*sizeof(double));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:7096:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(farkas,0,(2*numberColumns+numberRows)*sizeof(double));
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolve.cpp:7115:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                        if (value) {
                        ˜˜  ^˜˜˜˜
ClpSolve.cpp:7167:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                        if (value) {
                        ˜˜  ^˜˜˜˜
ClpSolve.cpp:7188:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (!value) 
                          ˜^˜˜˜˜
ClpSolve.cpp:7229:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(farkas,0,numberColumns*sizeof(double));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:7272:36: warning: if statement has empty body [-Wempty-body]
                      if (saveLower[i] < -1.0e20);
                                                 ^
ClpSolve.cpp:7272:36: note: put the semicolon on a separate line to silence this warning
ClpSolve.cpp:7283:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(temp,0,numberColumns2*sizeof(double));
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:7388:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                       memset(temp2,0,numberMasterColumns*sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolve.cpp:7395:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                       memcpy(temp3,temp2,numberMasterColumns*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpSolve.cpp:26:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSolve.cpp:2302:28: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
                      double * saveObj = CoinCopyOfArray(model2->objective(),numberColumns);
                                         ^
In file included from ClpSolve.cpp:28:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSolve.cpp:2903:21: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
                    CoinSort_2(weight + saveN, weight + numberSort, sort + saveN);
                    ^
109 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o Idiot.lo Idiot.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c Idiot.cpp  -fno-common -DPIC -o Idiot.o
In file included from Idiot.cpp:11:
In file included from ./ClpPresolve.hpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Idiot.cpp:11:
In file included from ./ClpPresolve.hpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Idiot.cpp:11:
In file included from ./ClpPresolve.hpp:8:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Idiot.cpp:11:
In file included from ./ClpPresolve.hpp:8:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from Idiot.cpp:11:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from Idiot.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Idiot.cpp:100:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rowsol, 0, nrows * sizeof(double));
                            ^˜˜˜˜ ˜
Idiot.cpp:129:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (value) {
                    ˜˜  ^˜˜˜˜
Idiot.cpp:343:15: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (objective[i]) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
Idiot.cpp:507:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          int extra = static_cast<int> (nrows * sizeof(double) / sizeof(int));
                                        ^˜˜˜˜ ˜
Idiot.cpp:630:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(lambda, 0, nrows * sizeof(double));
                       ^˜˜˜˜ ˜
Idiot.cpp:650:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (offset && logLevel > 2) {
         ^˜˜˜˜˜ ˜˜
Idiot.cpp:756:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(whenUsed, 0, ncols * sizeof(int));
                         ^˜˜˜˜ ˜
Idiot.cpp:891:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                   if (cost[i])
                   ˜˜  ^˜˜˜˜˜˜
Idiot.cpp:898:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                     if (cost[i]||colsol[i]<lower[i]+1.0e-9||
                         ^˜˜˜˜˜˜˜˜
Idiot.cpp:994:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                              memset(lambda, 0, nrows * sizeof(double));
                                                ^˜˜˜˜ ˜
Idiot.cpp:1017:35: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                              if (lambda[i]) nnz++;
                              ˜˜  ^˜˜˜˜˜˜˜˜
Idiot.cpp:1145:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (saveLambdaScale) {
     ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Idiot.cpp:1180:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(rowsol, 0, nrows * sizeof(double));
                            ^˜˜˜˜ ˜
Idiot.cpp:1333:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(rowsol, 0, nrows * sizeof(double));
                       ^˜˜˜˜ ˜
Idiot.cpp:1385:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
     int saveOptions = model_->specialOptions();
         ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Idiot.cpp:1386:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     model_->setSpecialOptions(saveOptions | 8192);
     ˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
Idiot.cpp:1432:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (lower[iCol]) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜
Idiot.cpp:1444:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (lower[iCol]) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜
Idiot.cpp:1779:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(saveBounds,lower,ncols*sizeof(double));
                                       ^˜˜˜˜˜
Idiot.cpp:1780:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(saveBounds+ncols,upper,ncols*sizeof(double));
                                             ^˜˜˜˜˜
Idiot.cpp:1810:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(rhs, 0, nrows * sizeof(double));
                                   ^˜˜˜˜ ˜
Idiot.cpp:1879:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memset(rhs, 0, nrows * sizeof(double));
                                   ^˜˜˜˜ ˜
Idiot.cpp:1915:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 memcpy(saveModel->columnLower(),saveBounds,ncols*sizeof(double));
                                                            ^˜˜˜˜˜
Idiot.cpp:1916:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 memcpy(saveModel->columnUpper(),saveBounds+ncols,ncols*sizeof(double));
                                                                  ^˜˜˜˜˜
Idiot.cpp:2181:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
     model_->setSpecialOptions(saveOptions);
     ˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜
In file included from Idiot.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
Idiot.cpp:572:21: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
                    CoinSort_2(dj, dj + n, whenUsed_);
                    ^
In file included from Idiot.cpp:11:
In file included from ./ClpPresolve.hpp:8:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
Idiot.cpp:725:8: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
         cost=CoinCopyOfArray(cost,ncols);
              ^
49 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o IdiSolve.lo IdiSolve.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c IdiSolve.cpp  -fno-common -DPIC -o IdiSolve.o
In file included from IdiSolve.cpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from IdiSolve.cpp:12:
In file included from ./Idiot.hpp:13:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from IdiSolve.cpp:12:
In file included from ./Idiot.hpp:13:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from IdiSolve.cpp:12:
In file included from ./Idiot.hpp:13:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
IdiSolve.cpp:93:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
IdiSolve.cpp:240:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(rowsol, 0, nrows * sizeof(double));
                       ^˜˜˜˜ ˜
IdiSolve.cpp:324:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(useCostExtra, 0, extraBlock * sizeof(double));
                                       ^˜˜˜˜˜˜˜˜˜ ˜
IdiSolve.cpp:348:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     memset(statusSave+numberColumns,0,ncols-numberColumns);
     ˜˜˜˜˜˜                            ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
IdiSolve.cpp:459:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                         memset(pi, 0, nrows * sizeof(double));
                                       ^˜˜˜˜ ˜
IdiSolve.cpp:477:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                   memset(allsum[i], 0, nrows * sizeof(double));
                                                        ^˜˜˜˜ ˜
IdiSolve.cpp:556:45: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                        if (value2) {
                                        ˜˜  ^˜˜˜˜˜
IdiSolve.cpp:1196:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (kgood || kbad) {
         ^˜˜˜˜ ˜˜
IdiSolve.cpp:1196:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (kgood || kbad) {
               ˜˜ ^˜˜˜
26 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o libClp.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpCholeskyBase.lo ClpCholeskyDense.lo ClpConstraint.lo ClpConstraintLinear.lo ClpConstraintQuadratic.lo Clp_C_Interface.lo ClpDualRowDantzig.lo ClpDualRowPivot.lo ClpDualRowSteepest.lo ClpDummyMatrix.lo ClpDynamicExampleMatrix.lo ClpDynamicMatrix.lo ClpEventHandler.lo ClpFactorization.lo ClpGubDynamicMatrix.lo ClpGubMatrix.lo ClpHelperFunctions.lo ClpInterior.lo ClpLinearObjective.lo ClpMatrixBase.lo ClpMessage.lo ClpModel.lo ClpNetworkBasis.lo ClpNetworkMatrix.lo ClpNonLinearCost.lo ClpNode.lo ClpObjective.lo ClpPackedMatrix.lo ClpPlusMinusOneMatrix.lo ClpPredictorCorrector.lo ClpPdco.lo ClpPdcoBase.lo ClpLsqr.lo ClpPresolve.lo ClpPrimalColumnDantzig.lo ClpPrimalColumnPivot.lo ClpPrimalColumnSteepest.lo ClpQuadraticObjective.lo ClpSimplex.lo ClpSimplexDual.lo ClpSimplexNonlinear.lo ClpSimplexOther.lo ClpSimplexPrimal.lo ClpSolve.lo Idiot.lo IdiSolve.lo       /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    
mkdir .libs
ar cru .libs/libClp.a  ClpCholeskyBase.o ClpCholeskyDense.o ClpConstraint.o ClpConstraintLinear.o ClpConstraintQuadratic.o Clp_C_Interface.o ClpDualRowDantzig.o ClpDualRowPivot.o ClpDualRowSteepest.o ClpDummyMatrix.o ClpDynamicExampleMatrix.o ClpDynamicMatrix.o ClpEventHandler.o ClpFactorization.o ClpGubDynamicMatrix.o ClpGubMatrix.o ClpHelperFunctions.o ClpInterior.o ClpLinearObjective.o ClpMatrixBase.o ClpMessage.o ClpModel.o ClpNetworkBasis.o ClpNetworkMatrix.o ClpNonLinearCost.o ClpNode.o ClpObjective.o ClpPackedMatrix.o ClpPlusMinusOneMatrix.o ClpPredictorCorrector.o ClpPdco.o ClpPdcoBase.o ClpLsqr.o ClpPresolve.o ClpPrimalColumnDantzig.o ClpPrimalColumnPivot.o ClpPrimalColumnSteepest.o ClpQuadraticObjective.o ClpSimplex.o ClpSimplexDual.o ClpSimplexNonlinear.o ClpSimplexOther.o ClpSimplexPrimal.o ClpSolve.o Idiot.o IdiSolve.o
ranlib .libs/libClp.a
creating libClp.la
(cd .libs && rm -f libClp.la && ln -s ../libClp.la libClp.la)
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSolver.lo ClpSolver.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSolver.cpp  -fno-common -DPIC -o ClpSolver.o
In file included from ClpSolver.cpp:26:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpSolver.cpp:30:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMpsIO.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpSolver.cpp:45:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpSolver.cpp:45:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpSolver.cpp:45:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSolver.cpp:60:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from ClpSolver.cpp:61:
./CbcOrClpParam.hpp:380:35: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return definedKeyWords_[currentKeyWord_];
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:449:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    field = field.substr(0, length - numberQuery);
                                                   ˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:513:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                              std::cout << types[iType] << std::endl;
                                           ˜˜˜˜˜ ^˜˜˜˜
ClpSolver.cpp:569:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                              std::cout << types[iType] << std::endl;
                                           ˜˜˜˜˜ ^˜˜˜˜
ClpSolver.cpp:1143:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                            memset(farkas,0,(2*numberColumns+numberRows)*sizeof(double));
                                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
ClpSolver.cpp:1158:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                                if (value) {
                                                ˜˜  ^˜˜˜˜
ClpSolver.cpp:1189:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                                                if (value) {
                                                ˜˜  ^˜˜˜˜
ClpSolver.cpp:2143:52: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
                              int specialOptions = models[iModel].specialOptions();
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2164:52: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
                              int specialOptions = models[iModel].specialOptions();
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2565:77: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                                                       size_t nBefore = ast - oldMask;
                                                              ˜˜˜˜˜˜˜   ˜˜˜˜^˜˜˜˜˜˜˜˜
ClpSolver.cpp:2569:80: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                                       for (size_t i = 0; i <= lengthName - length; i++) {
                                                                               ^˜˜˜˜˜˜˜˜˜ ˜
ClpSolver.cpp:2636:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                if (maskMatches(maskStarts,masks,columnNames[i]))
                                                                                 ˜˜˜˜˜˜˜˜˜˜˜ ^
ClpSolver.cpp:2654:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                if (maskMatches(maskStarts,masks,rowNames[i]))
                                                                                 ˜˜˜˜˜˜˜˜ ^
ClpSolver.cpp:2689:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                              const char * name = (printMode==7) ? rowNames[iWhich-numberColumns].c_str() : columnNames[iWhich].c_str();
                                                                                   ˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2689:102: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                              const char * name = (printMode==7) ? rowNames[iWhich-numberColumns].c_str() : columnNames[iWhich].c_str();
                                                                                                                            ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
ClpSolver.cpp:2697:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                  fprintf(fp,"%s,",columnNames[outSequence].c_str());
                                                                   ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2703:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                  fprintf(fp,"%s,",rowNames[outSequence].c_str());
                                                                   ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2715:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                  fprintf(fp,"%s",columnNames[outSequence].c_str());
                                                                  ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2721:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                  fprintf(fp,"%s",rowNames[outSequence].c_str());
                                                                  ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:2760:106: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                  if (doMask && !maskMatches(maskStarts, masks, rowNames[iRow]))
                                                                                                ˜˜˜˜˜˜˜˜ ^˜˜˜
ClpSolver.cpp:2765:90: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                            const char * name = rowNames[iRow].c_str();
                                                                                ˜˜˜˜˜˜˜˜ ^˜˜˜
ClpSolver.cpp:2798:85: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                                        columnNames[iColumn]))
                                                                        ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpSolver.cpp:2803:88: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                                                       const char * name = columnNames[iColumn].c_str();
                                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
ClpSolver.cpp:2946:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(number, 0, nRanges * sizeof(int));
                       ^˜˜˜˜˜˜ ˜
ClpSolver.cpp:2948:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(numberExact, 0, nRanges * sizeof(int));
                            ^˜˜˜˜˜˜ ˜
ClpSolver.cpp:3076:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                 if (!objective[iColumn])
                     ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3133:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      (numberDifferentObj+1)*sizeof(int));
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
ClpSolver.cpp:3229:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(number, 0, (numberRows + 1)*sizeof(int));
                        ˜˜˜˜˜˜˜˜˜˜˜^˜˜ ˜
ClpSolver.cpp:3243:30: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (length == 1 && objective[iColumn])
                          ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3246:15: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (objective[iColumn])
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3409:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(number, 0, (numberRows + 1)*sizeof(int));
                             ˜˜˜˜˜˜˜˜˜˜˜^˜˜ ˜
ClpSolver.cpp:3465:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(number, 0, (numberColumns + 1)*sizeof(int));
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜ ˜
ClpSolver.cpp:3512:10: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
           if (!objective[iColumn]) {
               ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3535:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
       memset(countIntegers,0,numberColumns*sizeof(int));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3699:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(blockEls,0,numberBlocks*sizeof(int));
                           ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3759:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         numberWritten=fwrite(blockStart,sizeof(int),numberRows,fpBlocks);
                       ˜˜˜˜˜˜                        ^˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3761:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         numberWritten=fwrite(columnBlock,sizeof(int),numberColumns,fpBlocks);
                       ˜˜˜˜˜˜                         ^˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3911:63: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                              if (rowLower[iRow] > -1.0e30 && rowLower[iRow])
                                                           ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3913:41: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                              else if (!rowLower[iRow])
                                       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3915:62: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                              if (rowUpper[iRow] < 1.0e30 && rowUpper[iRow])
                                                          ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3917:41: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                              else if (!rowUpper[iRow])
                                       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3956:54: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if (columnLower[iColumn] > -1.0e30 && columnLower[iColumn])
                                                  ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3958:26: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               else if (!columnLower[iColumn])
                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3960:53: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               if (columnUpper[iColumn] < 1.0e30 && columnUpper[iColumn])
                                                 ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ClpSolver.cpp:3962:26: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
               else if (!columnUpper[iColumn])
                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from ClpSolver.cpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, char *, CoinFirstLess_2<int, char *> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSolver.cpp:2593:46: note: in instantiation of function template specialization 'CoinSort_2<int, char *>' requested here
                                             CoinSort_2(sort, sort + nEntries, masks);
                                             ^
In file included from ClpSolver.cpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
ClpSolver.cpp:3081:5: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
           CoinSort_2(obj,obj+numberSort,which);
           ^
In file included from ClpSolver.cpp:26:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
ClpSolver.cpp:4377:21: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
     double * obj = CoinCopyOfArray(objective,numberColumns);
                    ^
70 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o CbcOrClpParam.lo CbcOrClpParam.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c CbcOrClpParam.cpp  -fno-common -DPIC -o CbcOrClpParam.o
In file included from CbcOrClpParam.cpp:8:
./CbcOrClpParam.hpp:380:35: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return definedKeyWords_[currentKeyWord_];
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CbcOrClpParam.cpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CbcOrClpParam.cpp:23:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CbcOrClpParam.cpp:23:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CbcOrClpParam.cpp:23:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from CbcOrClpParam.cpp:24:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:315:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return lengthName_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:317:30: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          return lengthName_ + 2;
          ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
CbcOrClpParam.cpp:410:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            std::string field=check.substr(n);
                              ˜˜˜˜˜        ^
CbcOrClpParam.cpp:446:45: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
     std::string current = definedKeyWords_[currentKeyWord_];
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:691:41: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               model->setSpecialOptions(value);
               ˜˜˜˜˜                    ^˜˜˜˜
CbcOrClpParam.cpp:743:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          value = model->specialOptions();
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:746:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          value = model->randomNumberGenerator()->getSeed();
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:1098:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    << definedKeyWords_[currentKeyWord_] << " to "
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:1099:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    << definedKeyWords_[value] << std::endl;
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
CbcOrClpParam.cpp:1111:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
           strcpy(current,definedKeyWords_[currentKeyWord_].c_str());
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:1117:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
           strcpy(newString,definedKeyWords_[value].c_str());
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
CbcOrClpParam.cpp:1141:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
           strcpy(current,definedKeyWords_[currentKeyWord_].c_str());
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:3983:70: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(primalRowSolution, sizeof(double), numberRows, fp);
                            ˜˜˜˜˜                                    ^˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:3986:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(dualRowSolution, sizeof(double), numberRows, fp);
                            ˜˜˜˜˜                                  ^˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:3989:73: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(primalColumnSolution, sizeof(double), numberColumns, fp);
                            ˜˜˜˜˜                                       ^˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:3992:71: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(dualColumnSolution, sizeof(double), numberColumns, fp);
                            ˜˜˜˜˜                                     ^˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:3998:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(temp, sizeof(double), numberRowsFile, fp);
                            ˜˜˜˜˜                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4002:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(temp, sizeof(double), numberRowsFile, fp);
                            ˜˜˜˜˜                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4006:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(temp, sizeof(double), numberColumnsFile, fp);
                            ˜˜˜˜˜                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4010:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                    nRead = fread(temp, sizeof(double), numberColumnsFile, fp);
                            ˜˜˜˜˜                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4085:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          nWrite = fwrite(primalRowSolution, sizeof(double), numberRows, fp);
                   ˜˜˜˜˜˜                                    ^˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4088:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          nWrite = fwrite(dualRowSolution, sizeof(double), numberRows, fp);
                   ˜˜˜˜˜˜                                  ^˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4093:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          nWrite = fwrite(primalColumnSolution, sizeof(double), numberColumns, fp);
                   ˜˜˜˜˜˜                                       ^˜˜˜˜˜˜˜˜˜˜˜˜
CbcOrClpParam.cpp:4096:63: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          nWrite = fwrite(dualColumnSolution, sizeof(double), numberColumns, fp);
                   ˜˜˜˜˜˜                                     ^˜˜˜˜˜˜˜˜˜˜˜˜
45 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o Clp_ampl.lo Clp_ampl.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c Clp_ampl.cpp  -fno-common -DPIC -o Clp_ampl.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o MyEventHandler.lo MyEventHandler.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c MyEventHandler.cpp  -fno-common -DPIC -o MyEventHandler.o
In file included from MyEventHandler.cpp:11:
In file included from ./MyEventHandler.hpp:9:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from MyEventHandler.cpp:11:
In file included from ./MyEventHandler.hpp:9:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from MyEventHandler.cpp:11:
In file included from ./MyEventHandler.hpp:9:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from MyEventHandler.cpp:11:
In file included from ./MyEventHandler.hpp:9:
In file included from ./ClpEventHandler.hpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o MyMessageHandler.lo MyMessageHandler.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c MyMessageHandler.cpp  -fno-common -DPIC -o MyMessageHandler.o
In file included from MyMessageHandler.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from MyMessageHandler.cpp:14:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from MyMessageHandler.cpp:14:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from MyMessageHandler.cpp:14:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o unitTest.lo unitTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c unitTest.cpp  -fno-common -DPIC -o unitTest.o
In file included from unitTest.cpp:20:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMpsIO.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from unitTest.cpp:23:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
In file included from unitTest.cpp:23:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:138:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return rowBlockNames_[i];}
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:141:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { rowBlockNames_[i] = name;}
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:148:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return columnBlockNames_[i];}
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinStructuredModel.hpp:151:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { columnBlockNames_[i] = name;}
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
In file included from unitTest.cpp:24:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from unitTest.cpp:34:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:195:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 assert (!elements_[index]);
                         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/assert.h:93:25: note: expanded from macro 'assert'
    (__builtin_expect(!(e), 0) ? __assert_rtn(__func__, __FILE__, __LINE__, #e) : (void)0)
                        ^
In file included from unitTest.cpp:34:
In file included from ./ClpFactorization.hpp:12:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from unitTest.cpp:34:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from unitTest.cpp:34:
In file included from ./ClpFactorization.hpp:22:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from unitTest.cpp:50:
./ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
unitTest.cpp:1590:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                         if (fabs(solnVec[c]) > 1.0e-8)
                                  ˜˜˜˜˜˜˜ ^
unitTest.cpp:1591:113: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                              std::cout << "Saved Solution: " << s << " ColNum: " << c << " Value: " << solnVec[c] << std::endl;
                                                                                                        ˜˜˜˜˜˜˜ ^
unitTest.cpp:1607:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                         if (fabs(solnVec[c]) > 1.0e-8)
                                  ˜˜˜˜˜˜˜ ^
unitTest.cpp:1608:113: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                              std::cout << "Saved Solution: " << s << " ColNum: " << c << " Value: " << solnVec[c] << std::endl;
                                                                                                        ˜˜˜˜˜˜˜ ^
unitTest.cpp:1751:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          double * binvA = reinterpret_cast<double*> (malloc((n_cols + n_rows) * sizeof(double)));
                                                              ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜  ˜
unitTest.cpp:1798:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (binvA[j]) {
                         ˜˜  ^˜˜˜˜˜˜˜
unitTest.cpp:1804:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (binvA[j+n_cols]) {
                         ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
unitTest.cpp:1816:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (binvA[j]) {
                         ˜˜  ^˜˜˜˜˜˜˜
unitTest.cpp:1843:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (binvA[j])
                         ˜˜  ^˜˜˜˜˜˜˜
unitTest.cpp:1854:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                         if (binvA[j])
                         ˜˜  ^˜˜˜˜˜˜˜
unitTest.cpp:2311:66: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               memset(solution.statusArray() + numberColumns, 0, numberRows);
               ˜˜˜˜˜˜                                            ^˜˜˜˜˜˜˜˜˜
In file included from unitTest.cpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from unitTest.cpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
42 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o libClpSolver.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpSolver.lo CbcOrClpParam.lo Clp_ampl.lo MyEventHandler.lo MyMessageHandler.lo unitTest.lo /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    libClp.la 
ar cru .libs/libClpSolver.a  ClpSolver.o CbcOrClpParam.o Clp_ampl.o MyEventHandler.o MyMessageHandler.o unitTest.o
ranlib .libs/libClpSolver.a
creating libClpSolver.la
(cd .libs && rm -f libClpSolver.la && ln -s ../libClpSolver.la libClpSolver.la)
clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpMain.o ClpMain.cpp
In file included from ClpMain.cpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from ClpMain.cpp:9:
In file included from ./ClpSimplex.hpp:16:
In file included from ./ClpModel.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from ClpMain.cpp:9:
In file included from ./ClpSimplex.hpp:16:
./ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
./ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
./ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
./ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
./ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from ClpMain.cpp:9:
In file included from ./ClpSimplex.hpp:18:
./ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
17 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o clp  ClpMain.o libClpSolver.la libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm     
clang++ -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -o clp ClpMain.o -framework Accelerate -Wl,-bind_at_load  ./.libs/libClpSolver.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a ./.libs/libClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -lm
Making all in src/OsiClp
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o OsiClpSolverInterface.lo OsiClpSolverInterface.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c OsiClpSolverInterface.cpp  -fno-common -DPIC -o OsiClpSolverInterface.o
In file included from OsiClpSolverInterface.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from OsiClpSolverInterface.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiClpSolverInterface.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:118:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = iRow|(triple.row&0x80000000);}
               ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModelUseful.hpp:125:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ triple.row = (string ? 0x80000000 : 0)|iRow;}
                                        ˜^˜˜˜
In file included from OsiClpSolverInterface.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinModel.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiClpSolverInterface.cpp:24:
In file included from ../ClpFactorization.hpp:22:
In file included from ../ClpSimplex.hpp:16:
../ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
../ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
../ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
../ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
../ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from OsiClpSolverInterface.cpp:24:
In file included from ../ClpFactorization.hpp:22:
In file included from ../ClpSimplex.hpp:18:
../ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from OsiClpSolverInterface.cpp:33:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from OsiClpSolverInterface.cpp:36:
../ClpPresolve.hpp:208:63: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                            ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../ClpPresolve.hpp:208:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          presolveActions_  = (presolveActions_ & 0xffff0000) | (action & 0xffff);
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:96:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (objValue) {
      ˜˜  ^˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:133:21: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  int saveOptions = solver->specialOptions();
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:134:43: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  solver->setSpecialOptions(saveOptions|64|32768); // go as far as possible
  ˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
OsiClpSolverInterface.cpp:711:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    solver->setSpecialOptions(saveOptions);
    ˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:869:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (objValue) {
      ˜˜  ^˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:894:23: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    int saveOptions = modelPtr_->specialOptions();
        ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:906:34: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->setSpecialOptions(saveOptions); // restore
    ˜˜˜˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:914:21: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  int saveOptions = modelPtr_->specialOptions();
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:919:47: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      modelPtr_->setSpecialOptions(saveOptions|(64|1024|32768));
      ˜˜˜˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:925:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        modelPtr_->setSpecialOptions(saveOptions|(64|128|512|1024|4096|32768));
        ˜˜˜˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:927:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        modelPtr_->setSpecialOptions(saveOptions|(64|128|512|1024|2048|4096|32768));
        ˜˜˜˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:930:48: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->setSpecialOptions(saveOptions|64|32768);
    ˜˜˜˜˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
OsiClpSolverInterface.cpp:1002:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      specialOptions_ &= ˜128;
                      ˜˜ ^˜˜˜
OsiClpSolverInterface.cpp:1208:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        modelPtr_->setSpecialOptions(saveOptions);
        ˜˜˜˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1315:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  modelPtr_->setSpecialOptions(saveOptions); // restore
  ˜˜˜˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1328:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->whatsChanged_ &= ˜0xffff;
                             ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1718:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (objValue) {
      ˜˜  ^˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1747:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    int size = static_cast<int>((1+4*(numberRows+numberColumns))*sizeof(double));
                                 ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:1749:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    size += static_cast<int>(2*numberColumns*sizeof(double));
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1750:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    size += static_cast<int>((1+4*numberRows+2*numberColumns)*sizeof(int));
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:1770:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ &= ˜131072;
                          ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1855:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    int size = static_cast<int>((1+4*(numberRows+numberColumns))*sizeof(double));
                                 ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:1857:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    size += static_cast<int>(2*numberColumns*sizeof(double));
                             ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:1858:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    size += static_cast<int>((1+4*numberRows+2*numberColumns)*sizeof(int));
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:1990:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      small->specialOptions_ &= ˜65536;
                             ˜˜ ^˜˜˜˜˜
OsiClpSolverInterface.cpp:2039:22: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    int clpOptions = modelPtr_->specialOptions();
        ˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:2042:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      small->setSpecialOptions(clpOptions|(64|1024));
      ˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:2045:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        small->setSpecialOptions(clpOptions|(64|128|512|1024|4096));
        ˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:2047:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        small->setSpecialOptions(clpOptions|(64|128|512|1024|2048|4096));
        ˜˜˜˜˜                    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:2640:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(ray,0,numberRows*sizeof(double));
                   ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:2681:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(modelPtr_->primalRowSolution(),0,numberRows*sizeof(double));
                                              ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:2784:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->whatsChanged_ &= ˜0xffff;
                             ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:3715:28: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(columnType_,0,numCols);
      ˜˜˜˜˜˜               ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:3959:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(modelPtr_->primalRowSolution(),0,modelPtr_->numberRows()*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:3974:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         modelPtr_->numberColumns()*sizeof(double));
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:5286:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowScale_.extend(static_cast<int>(2*newNumberRows*sizeof(double)));
                                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:5327:22: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  specialOptions_ &= ˜131072;
                  ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:5696:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    rowNames.reserve(nRows);
    ˜˜˜˜˜˜˜˜         ^˜˜˜˜
OsiClpSolverInterface.cpp:5705:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    columnNames.reserve(nCols);
    ˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜
OsiClpSolverInterface.cpp:5807:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      rowNames.reserve(nRows);
      ˜˜˜˜˜˜˜˜         ^˜˜˜˜
OsiClpSolverInterface.cpp:5816:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      columnNames.reserve(nCols);
      ˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜
OsiClpSolverInterface.cpp:5871:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowNames.reserve(nRows);
  ˜˜˜˜˜˜˜˜         ^˜˜˜˜
OsiClpSolverInterface.cpp:5880:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  columnNames.reserve(nCols);
  ˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜˜
OsiClpSolverInterface.cpp:6139:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->whatsChanged_ &= ˜0xffff; // switch off
                             ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:6163:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->whatsChanged_ &= ˜0xffff; // switch off
                             ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:6182:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->whatsChanged_ &= ˜0xffff; // switch off
                             ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:6486:32: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  int saveOptions = modelPtr_->specialOptions_;
      ˜˜˜˜˜˜˜˜˜˜˜   ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:6487:33: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  modelPtr_->specialOptions_ &= ˜262144;
                             ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:6498:30: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  modelPtr_->specialOptions_=saveOptions;
                            ˜^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:7435:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          specialOptions_ |= array[0]<<10;
                          ˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
OsiClpSolverInterface.cpp:7463:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int size = static_cast<int>((1+4*(numberRows+numberColumns))*sizeof(double));
                               ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:7465:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  size += static_cast<int>(2*numberColumns*sizeof(double));
                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:7466:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  size += static_cast<int>((1+4*numberRows+2*numberColumns)*sizeof(int));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiClpSolverInterface.cpp:7732:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memset(ray,0,numberRows*sizeof(double));
                         ^˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:9106:16: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      value &= ˜131072;
            ˜˜ ^˜˜˜˜˜˜
OsiClpSolverInterface.cpp:9267:14: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (n==0&&element[j])
                  ˜˜^˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:9447:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (!gap)
        ˜^˜˜
OsiClpSolverInterface.cpp:9711:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!gap)
          ˜^˜˜
OsiClpSolverInterface.cpp:9822:7: warning: unused variable 'iRow' [-Wunused-variable]
  int iRow,iColumn;
      ^
OsiClpSolverInterface.cpp:9840:17: warning: unused variable 'objective' [-Wunused-variable]
  const double *objective = getObjCoefficients() ;
                ^
OsiClpSolverInterface.cpp:9841:10: warning: unused variable 'direction' [-Wunused-variable]
  double direction = getObjSense();
         ^
OsiClpSolverInterface.cpp:10124:62: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    modelPtr_->setSpecialOptions(modelPtr_->specialOptions()&˜(2048+4096));
                                                            ˜^˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:10527:55: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          model_->setSpecialOptions(model_->specialOptions()&˜(2048+4096));
                                                            ˜^˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:10633:13: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  iValue1 = this->specialOptions();
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
OsiClpSolverInterface.cpp:10634:13: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  iValue2 = other->specialOptions();
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from OsiClpSolverInterface.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiClpSolverInterface.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from OsiClpSolverInterface.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiClpSolverInterface.cpp:4144:21: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    int * indices = CoinCopyOfArray(columnIndices,num);
                    ^
In file included from OsiClpSolverInterface.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
OsiClpSolverInterface.cpp:7936:27: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
      double * rowScale = CoinCopyOfArray(rowScale_.array(),2*numberRows);
                          ^
102 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o libOsiClp.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 OsiClpSolverInterface.lo /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    ../libClp.la 
mkdir .libs
ar cru .libs/libOsiClp.a  OsiClpSolverInterface.o
ranlib .libs/libOsiClp.a
creating libOsiClp.la
(cd .libs && rm -f libOsiClp.la && ln -s ../libOsiClp.la libOsiClp.la)
make[3]: Nothing to be done for `all-am'.
Making all in Cgl
Making all in src
make  all-recursive
Making all in CglAllDifferent
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglAllDifferent.lo CglAllDifferent.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglAllDifferent.cpp  -fno-common -DPIC -o CglAllDifferent.o
In file included from CglAllDifferent.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglAllDifferent.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglAllDifferent.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglAllDifferent.cpp:20:
In file included from ./CglAllDifferent.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglAllDifferent.cpp:101:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(backStart,0,(numberDifferent_+1)*sizeof(int));
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglAllDifferent.cpp:127:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(possible,0,gap*numberDifferent_);
  ˜˜˜˜˜˜            ˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglAllDifferent.cpp:135:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset(possible+startV,1,n);
    ˜˜˜˜˜˜                   ^
CglAllDifferent.cpp:165:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(stack,0,(numberDifferent_+1)*sizeof(int));
                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglAllDifferent.cpp:166:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(first,0,(numberDifferent_+1)*sizeof(int));
                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglAllDifferent.cpp:172:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(check,0,gap*sizeof(int));
                     ^˜˜˜
CglAllDifferent.cpp:231:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(bitmap,0,n*sizeof(unsigned int));
                        ^˜
CglAllDifferent.cpp:292:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
              bitmap[j] |= iBit;
                        ˜˜ ^˜˜˜
In file included from CglAllDifferent.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglAllDifferent.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglAllDifferent.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglAllDifferent.cpp:445:14: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    start_ = CoinCopyOfArray(starts,numberSets_+1);
             ^
31 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglAllDifferent.la  -no-undefined -version-info 10:4:9 CglAllDifferent.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglAllDifferent.a  CglAllDifferent.o
ranlib .libs/libCglAllDifferent.a
creating libCglAllDifferent.la
(cd .libs && rm -f libCglAllDifferent.la && ln -s ../libCglAllDifferent.la libCglAllDifferent.la)
Making all in CglClique
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglClique.lo CglClique.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglClique.cpp  -fno-common -DPIC -o CglClique.o
In file included from CglClique.cpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglClique.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglClique.cpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglClique.cpp:12:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglClique.cpp:495:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           (current_nodenum-del_ind-1) * sizeof(int));
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜  ˜
CglClique.cpp:498:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           (current_nodenum-del_ind-1) * sizeof(int));
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜  ˜
CglClique.cpp:501:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           (current_nodenum-del_ind-1) * sizeof(double));
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜  ˜
In file included from CglClique.cpp:788:
./../CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglClique.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglClique.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
26 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglCliqueHelper.lo CglCliqueHelper.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglCliqueHelper.cpp  -fno-common -DPIC -o CglCliqueHelper.o
In file included from CglCliqueHelper.cpp:10:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglCliqueHelper.cpp:11:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglCliqueHelper.cpp:11:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglCliqueHelper.cpp:11:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglCliqueHelper.cpp:48:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      sp_orig_col_ind[i] = fracind[i];
                           ˜˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:49:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      sp_colsol[i] = x[fracind[i]];
                       ˜˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:79:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      sp_orig_col_ind[i] = fracind[i];
                           ˜˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:80:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      sp_colsol[i] = x[fracind[i]];
                       ˜˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:93:28: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
   std::vector<int> clique(numrows, 1);
                    ˜˜˜˜˜˜ ^˜˜˜˜˜˜
CglCliqueHelper.cpp:106:13: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            clique[ind[i]] = 0;
            ˜˜˜˜˜˜ ^˜˜˜˜˜
CglCliqueHelper.cpp:117:10: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
         clique[i] = 0;
         ˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:120:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      if (clique[i] == 1) {
          ˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:125:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               clique[i] = 0;
               ˜˜˜˜˜˜ ^
CglCliqueHelper.cpp:136:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
      if (clique[i] == 1) {
          ˜˜˜˜˜˜ ^
In file included from CglCliqueHelper.cpp:11:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglCliqueHelper.cpp:11:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
32 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglCliqueTest.lo CglCliqueTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglCliqueTest.cpp  -fno-common -DPIC -o CglCliqueTest.o
In file included from CglCliqueTest.cpp:14:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglCliqueTest.cpp:14:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglCliqueTest.cpp:14:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglCliqueTest.cpp:14:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglCliqueTest.cpp:14:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglCliqueTest.cpp:14:
In file included from ./CglClique.hpp:9:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglClique.la  -no-undefined -version-info 10:4:9 CglClique.lo CglCliqueHelper.lo CglCliqueTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglClique.a  CglClique.o CglCliqueHelper.o CglCliqueTest.o
ranlib .libs/libCglClique.a
creating libCglClique.la
(cd .libs && rm -f libCglClique.la && ln -s ../libCglClique.la libCglClique.la)
Making all in CglDuplicateRow
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglDuplicateRow.lo CglDuplicateRow.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglDuplicateRow.cpp  -fno-common -DPIC -o CglDuplicateRow.o
In file included from CglDuplicateRow.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglDuplicateRow.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglDuplicateRow.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglDuplicateRow.cpp:19:
In file included from ./CglDuplicateRow.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:205:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (!colUpper2[jColumn]||columnLower[jColumn])
                ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:205:31: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
            if (!colUpper2[jColumn]||columnLower[jColumn])
                                   ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:213:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (random[iRow]) {
              ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:226:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!colUpper2[kColumn]||columnLower[kColumn])
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:226:33: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
              if (!colUpper2[kColumn]||columnLower[kColumn])
                                     ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:241:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (random[iRow]) {
                ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:370:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (!random[iRow]) {
                          ˜^˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:445:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
    if (columnLower[i]) {
    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:474:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(check,0,numberColumns);
  ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:486:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (value) {
          ˜˜  ^˜˜˜˜
CglDuplicateRow.cpp:898:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(rowCount,0,numberRows*sizeof(int));
                    ^˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:899:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(originalRows,0,numberRows*sizeof(int));
                        ^˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:907:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(rhs2,0,numberRows*sizeof(double));
                ^˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:908:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(rowFlag,0,numberRows);
  ˜˜˜˜˜˜           ^˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:909:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(columnFlag,0,numberColumns);
  ˜˜˜˜˜˜              ^˜˜˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:1048:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset(mark,0,nCol2);
    ˜˜˜˜˜˜        ^˜˜˜˜
CglDuplicateRow.cpp:2231:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(duplicate_,temp,numberRows*sizeof(int));
                         ^˜˜˜˜˜˜˜˜˜˜
CglDuplicateRow.cpp:3046:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(fixed,0,numberIntegers*sizeof(int));
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglDuplicateRow.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglDuplicateRow.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglDuplicateRow.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglDuplicateRow.cpp:74:24: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
  int * effectiveRhs = CoinCopyOfArray(rhs_,numberRows);
                       ^
In file included from CglDuplicateRow.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglDuplicateRow.cpp:147:24: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  double * colUpper2 = CoinCopyOfArray(columnUpper,numberColumns);
                       ^
42 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglDuplicateRow.la  -no-undefined -version-info 10:4:9 CglDuplicateRow.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglDuplicateRow.a  CglDuplicateRow.o
ranlib .libs/libCglDuplicateRow.a
creating libCglDuplicateRow.la
(cd .libs && rm -f libCglDuplicateRow.la && ln -s ../libCglDuplicateRow.la libCglDuplicateRow.la)
Making all in CglFlowCover
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglFlowCover.lo CglFlowCover.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglFlowCover.cpp  -fno-common -DPIC -o CglFlowCover.o
In file included from CglFlowCover.cpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglFlowCover.cpp:23:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglFlowCover.cpp:23:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglFlowCover.cpp:23:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglFlowCover.cpp:20:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglFlowCover.cpp:20:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglFlowCoverTest.lo CglFlowCoverTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglFlowCoverTest.cpp  -fno-common -DPIC -o CglFlowCoverTest.o
In file included from CglFlowCoverTest.cpp:22:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglFlowCoverTest.cpp:22:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglFlowCoverTest.cpp:22:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglFlowCoverTest.cpp:22:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglFlowCoverTest.cpp:22:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglFlowCoverTest.cpp:22:
In file included from ./CglFlowCover.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglFlowCover.la  -no-undefined -version-info 10:4:9 CglFlowCover.lo CglFlowCoverTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglFlowCover.a  CglFlowCover.o CglFlowCoverTest.o
ranlib .libs/libCglFlowCover.a
creating libCglFlowCover.la
(cd .libs && rm -f libCglFlowCover.la && ln -s ../libCglFlowCover.la libCglFlowCover.la)
Making all in CglGMI
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglGMI.lo CglGMI.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglGMI.cpp  -fno-common -DPIC -o CglGMI.o
In file included from CglGMI.cpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglGMI.cpp:23:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglGMI.cpp:24:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglGMI.cpp:25:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglGMI.cpp:27:
In file included from ./CglGMI.hpp:14:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglGMI.cpp:891:8: warning: unused variable 'numerator' [-Wunused-variable]
  long numerator = 0, denominator = 0;
       ^
CglGMI.cpp:891:23: warning: unused variable 'denominator' [-Wunused-variable]
  long numerator = 0, denominator = 0;
                      ^
CglGMI.cpp:1180:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(cut, 0, ncol*sizeof(double));
                   ^˜˜˜˜
In file included from CglGMI.cpp:21:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglGMI.cpp:21:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
28 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglGMIParam.lo CglGMIParam.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglGMIParam.cpp  -fno-common -DPIC -o CglGMIParam.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglGMI.la  -no-undefined -version-info 10:4:9 CglGMI.lo CglGMIParam.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglGMI.a  CglGMI.o CglGMIParam.o
ranlib .libs/libCglGMI.a
creating libCglGMI.la
(cd .libs && rm -f libCglGMI.la && ln -s ../libCglGMI.la libCglGMI.la)
Making all in CglGomory
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglGomory.lo CglGomory.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglGomory.cpp  -fno-common -DPIC -o CglGomory.o
In file included from CglGomory.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglGomory.cpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglGomory.cpp:20:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglGomory.cpp:20:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglGomory.cpp:23:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CglGomory.cpp:23:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from CglGomory.cpp:36:
In file included from ./CglGomory.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglGomory.cpp:112:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(simplex->columnLower(),colLower,numberColumns*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglGomory.cpp:113:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(simplex->columnUpper(),colUpper,numberColumns*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglGomory.cpp:132:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(copy,0,numberRows-numberOriginalRows);
      ˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglGomory.cpp:213:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             numberColumns*sizeof(double));
             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglGomory.cpp:279:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(simplex->objective(),objective,numberColumns*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglGomory.cpp:303:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!sum) {
          ˜^˜˜
CglGomory.cpp:680:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int lengthArray = static_cast<int>(numberColumns+1+((numberColumns+1)*sizeof(int))/sizeof(double));
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
CglGomory.cpp:680:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int lengthArray = static_cast<int>(numberColumns+1+((numberColumns+1)*sizeof(int))/sizeof(double));
                                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglGomory.cpp:1028:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!intVar[jColumn]&&!oldValue) 
                                    ˜^˜˜˜˜˜˜˜
CglGomory.cpp:1223:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (packed[j]) {
                  ˜˜  ^˜˜˜˜˜˜˜˜
In file included from CglGomory.cpp:17:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglGomory.cpp:17:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglGomory.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglGomory.cpp:115:19: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
      objective = CoinCopyOfArray(obj,numberColumns);
                  ^
43 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglGomoryTest.lo CglGomoryTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglGomoryTest.cpp  -fno-common -DPIC -o CglGomoryTest.o
In file included from CglGomoryTest.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglGomoryTest.cpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglGomoryTest.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglGomoryTest.cpp:17:
In file included from ./CglGomory.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglGomoryTest.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglGomoryTest.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglGomory.la  -no-undefined -version-info 10:4:9 CglGomory.lo CglGomoryTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglGomory.a  CglGomory.o CglGomoryTest.o
ranlib .libs/libCglGomory.a
creating libCglGomory.la
(cd .libs && rm -f libCglGomory.la && ln -s ../libCglGomory.la libCglGomory.la)
Making all in CglKnapsackCover
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglKnapsackCover.lo CglKnapsackCover.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglKnapsackCover.cpp  -fno-common -DPIC -o CglKnapsackCover.o
In file included from CglKnapsackCover.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglKnapsackCover.cpp:15:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglKnapsackCover.cpp:15:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglKnapsackCover.cpp:15:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglKnapsackCover.cpp:333:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(thisColumnIndex,column+rowStart[rowIndex],length*sizeof(int));
                                                       ^˜˜˜˜˜˜
CglKnapsackCover.cpp:335:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             length*sizeof(double));
             ^˜˜˜˜˜˜
CglKnapsackCover.cpp:457:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (thisElement[i]) {
            ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglKnapsackCover.cpp:1243:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ratio, 0, (nCols*sizeof(double)));
                    ^˜˜˜˜˜
CglKnapsackCover.cpp:1453:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ratio, 0, (nCols*sizeof(double)));
                    ^˜˜˜˜˜
CglKnapsackCover.cpp:2533:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(ratio, 0, (nCols*sizeof(double)));
                      ^˜˜˜˜˜
CglKnapsackCover.cpp:3022:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(ratio, 0, (nCols*sizeof(double)));
                      ^˜˜˜˜˜
CglKnapsackCover.cpp:3204:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(mu, 0, (cover.getNumElements()+1)*sizeof(double));
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglKnapsackCover.cpp:3205:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(muMinusLambda, 0, (cover.getNumElements()+1)*sizeof(double));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglKnapsackCover.cpp:3331:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!els[jColumn]&&els2[jColumn]) {
                  ˜^˜˜˜˜˜˜˜˜˜˜˜
CglKnapsackCover.cpp:3331:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!els[jColumn]&&els2[jColumn]) {
                               ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglKnapsackCover.cpp:3429:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!els[jColumn]&&els2[jColumn]) {
                  ˜^˜˜˜˜˜˜˜˜˜˜˜
CglKnapsackCover.cpp:3429:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!els[jColumn]&&els2[jColumn]) {
                               ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglKnapsackCover.cpp:3517:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(x, 0, (n)*sizeof(int));
                ^ ˜
CglKnapsackCover.cpp:3519:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(xhat, 0, (n+1)*sizeof(int));
                   ˜^˜ ˜
In file included from CglKnapsackCover.cpp:15:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglKnapsackCover.cpp:15:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
37 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglKnapsackCoverTest.lo CglKnapsackCoverTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglKnapsackCoverTest.cpp  -fno-common -DPIC -o CglKnapsackCoverTest.o
In file included from CglKnapsackCoverTest.cpp:14:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglKnapsackCoverTest.cpp:14:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglKnapsackCoverTest.cpp:14:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglKnapsackCoverTest.cpp:14:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglKnapsackCoverTest.cpp:552:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(start,0,ncol*sizeof(CoinBigIndex ));
                     ^˜˜˜˜
CglKnapsackCoverTest.cpp:580:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(upper,0,ncol*sizeof(double));
                     ^˜˜˜˜
In file included from CglKnapsackCoverTest.cpp:14:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglKnapsackCoverTest.cpp:14:
In file included from ./CglKnapsackCover.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
24 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglKnapsackCover.la  -no-undefined -version-info 10:4:9 CglKnapsackCover.lo CglKnapsackCoverTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglKnapsackCover.a  CglKnapsackCover.o CglKnapsackCoverTest.o
ranlib .libs/libCglKnapsackCover.a
creating libCglKnapsackCover.la
(cd .libs && rm -f libCglKnapsackCover.la && ln -s ../libCglKnapsackCover.la libCglKnapsackCover.la)
Making all in CglLandP
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandPUtils.lo CglLandPUtils.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandPUtils.cpp  -fno-common -DPIC -o CglLandPUtils.o
In file included from CglLandPUtils.cpp:12:
In file included from ./CglLandPUtils.hpp:14:
In file included from ./CglLandPTabRow.hpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglLandPUtils.cpp:12:
In file included from ./CglLandPUtils.hpp:14:
In file included from ./CglLandPTabRow.hpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglLandPUtils.cpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLandPUtils.cpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
CglLandPUtils.cpp:91:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    if (cuts_[i] == NULL) numberCuts_++;
        ˜˜˜˜˜ ^
CglLandPUtils.cpp:95:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
               cuts_[i]->effectiveness(), cut->effectiveness());
               ˜˜˜˜˜ ^
CglLandPUtils.cpp:96:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        delete cuts_[i];
               ˜˜˜˜˜ ^
CglLandPUtils.cpp:98:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    cuts_[i] = cut;
    ˜˜˜˜˜ ^
In file included from CglLandPUtils.cpp:12:
In file included from ./CglLandPUtils.hpp:14:
In file included from ./CglLandPTabRow.hpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLandPUtils.cpp:12:
In file included from ./CglLandPUtils.hpp:14:
In file included from ./CglLandPTabRow.hpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
28 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandP.lo CglLandP.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandP.cpp  -fno-common -DPIC -o CglLandP.o
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:14:
In file included from ./CglLandPValidator.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:14:
./CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
./CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglLandP.cpp:12:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CglLandP.cpp:12:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from CglLandP.cpp:12:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglLandP.cpp:12:
./CglLandPSimplex.hpp:207:27: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return lo_bounds_[original_index_[index]];
               ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:207:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return lo_bounds_[original_index_[index]];
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:212:27: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return up_bounds_[original_index_[index]];
               ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:212:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return up_bounds_[original_index_[index]];
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:217:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return colsolToCut_[original_index_[index]];
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:221:47: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                   ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:221:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:221:94: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                                                                  ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:221:110: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                                                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:226:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        colsolToCut_[original_index_[index]] = value;
                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:237:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return integers_[original_index_[index]];
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:251:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            return a*norm_weights_[ii];
                     ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandP.cpp:676:40: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        OsiRowCut * cut = extra.rowCut(i);
                          ˜˜˜˜˜        ^
CglLandP.cpp:766:38: warning: implicit conversion changes signedness: 'value_type' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        frac_indices[i] = colIndices[indices[i]];
                          ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLandP.cpp:11:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
CglLandP.cpp:733:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        bool result = (vec_1_[i] < vec_1_[j]) ||
                       ˜˜˜˜˜˜ ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/algorithm:3779:17: note: in instantiation of member function 'StableExternalComp<double, int>::operator()' requested here
            if (__comp(*--__last, *__first))
                ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/algorithm:3965:5: note: in instantiation of function template specialization 'std::__1::__sort<StableExternalComp<double, int> &, int *>' requested here
    __sort<_Comp_ref>(__first, __last, __comp);
    ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/algorithm:3999:12: note: in instantiation of function template specialization 'std::__1::sort<int *, StableExternalComp<double, int> &>' requested here
    _VSTD::sort<_Tp*, _Comp_ref>(__first.base(), __last.base(), __comp);
           ^
CglLandP.cpp:762:10: note: in instantiation of function template specialization 'std::__1::sort<int, StableExternalComp<double, int> >' requested here
    std::sort(indices.begin(), indices.end(),StableExternalComp<double, int>(values,colIndices));
         ^
CglLandP.cpp:733:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        bool result = (vec_1_[i] < vec_1_[j]) ||
                                   ˜˜˜˜˜˜ ^
CglLandP.cpp:734:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                      ( ((vec_1_[i]== vec_1_[j]))
                          ˜˜˜˜˜˜ ^
CglLandP.cpp:734:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                      ( ((vec_1_[i]== vec_1_[j]))
                                      ˜˜˜˜˜˜ ^
CglLandP.cpp:735:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                        && (vec_2_[i] < vec_2_[j]));
                            ˜˜˜˜˜˜ ^
CglLandP.cpp:735:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                        && (vec_2_[i] < vec_2_[j]));
                                        ˜˜˜˜˜˜ ^
56 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandPTabRow.lo CglLandPTabRow.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandPTabRow.cpp  -fno-common -DPIC -o CglLandPTabRow.o
In file included from CglLandPTabRow.cpp:12:
In file included from ./CglLandPTabRow.hpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglLandPTabRow.cpp:12:
In file included from ./CglLandPTabRow.hpp:15:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglLandPTabRow.cpp:13:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:14:
In file included from ./CglLandPValidator.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLandPTabRow.cpp:13:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:14:
./CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
./CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CglLandPTabRow.cpp:13:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglLandPTabRow.cpp:13:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglLandPTabRow.cpp:13:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CglLandPTabRow.cpp:13:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from CglLandPTabRow.cpp:13:
./CglLandPSimplex.hpp:207:27: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return lo_bounds_[original_index_[index]];
               ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:207:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return lo_bounds_[original_index_[index]];
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:212:27: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return up_bounds_[original_index_[index]];
               ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:212:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return up_bounds_[original_index_[index]];
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:217:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return colsolToCut_[original_index_[index]];
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:221:47: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                   ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:221:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:221:94: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                                                                  ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:221:110: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                                                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:226:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        colsolToCut_[original_index_[index]] = value;
                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:237:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return integers_[original_index_[index]];
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:251:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            return a*norm_weights_[ii];
                     ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
In file included from CglLandPTabRow.cpp:12:
In file included from ./CglLandPTabRow.hpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLandPTabRow.cpp:12:
In file included from ./CglLandPTabRow.hpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
48 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandPMessages.lo CglLandPMessages.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandPMessages.cpp  -fno-common -DPIC -o CglLandPMessages.o
In file included from CglLandPMessages.cpp:11:
In file included from ./CglLandPMessages.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessage.hpp:24:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandPSimplex.lo CglLandPSimplex.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandPSimplex.cpp  -fno-common -DPIC -o CglLandPSimplex.o
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:14:
In file included from ./CglLandPValidator.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:14:
./CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
./CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:27:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:21:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglLandPSimplex.cpp:11:
./CglLandPSimplex.hpp:207:27: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return lo_bounds_[original_index_[index]];
               ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:207:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return lo_bounds_[original_index_[index]];
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:212:27: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return up_bounds_[original_index_[index]];
               ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:212:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return up_bounds_[original_index_[index]];
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:217:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return colsolToCut_[original_index_[index]];
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:221:47: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                   ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:221:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:221:94: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                                                                  ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPSimplex.hpp:221:110: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return (index >= ncols_ && lo_bounds_[original_index_[index]] < -1e-10 && up_bounds_[original_index_[index]] <= 1e-09);
                                                                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:226:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        colsolToCut_[original_index_[index]] = value;
                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:237:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return integers_[original_index_[index]];
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
./CglLandPSimplex.hpp:251:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            return a*norm_weights_[ii];
                     ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:249:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    lo_bounds_.resize(ncols_orig_ + nrows_orig_);
    ˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:250:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    up_bounds_.resize(ncols_orig_ + nrows_orig_);
    ˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:261:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            lo_bounds_[i]=0.;
            ˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:262:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        else lo_bounds_[i]= - infty;
             ˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:264:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            up_bounds_[i] = infty;
            ˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:267:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            lo_bounds_[i] = rowLower[iRow] - rowUpper[iRow];
            ˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:268:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            up_bounds_[i] = 0;
            ˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:271:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            up_bounds_[i] = 0.;
            ˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:273:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    cuts_.resize(ncols_orig_);
    ˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:277:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        rWk1_.resize(nrows_orig_);
        ˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:278:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        rWk2_.resize(nrows_orig_);
        ˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:279:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        rWk3_.resize(nrows_orig_);
        ˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:280:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        rWk4_.resize(nrows_orig_);
        ˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:281:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        rIntWork_.resize(nrows_orig_);
        ˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:285:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        col_in_subspace.resize(ncols_orig_ + nrows_orig_);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:292:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        original_index_.resize(ncols_orig_ + nrows_orig_);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:302:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        original_index_.resize(ncols_orig_ + nrows_orig_);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:349:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    norm_weights_.resize(ncols_orig_ ,1.);
    ˜˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:350:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    norm_weights_.resize(ncols_orig_ + nrows_orig_, 0.);
    ˜˜˜˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:352:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    double * rows_weights = &norm_weights_[ncols_orig_];
                             ˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:353:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    std::vector<int> nnz(nrows_orig_,0);
                     ˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:382:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                nnz[ind[k]] ++;
                ˜˜˜ ^˜˜˜˜˜
CglLandPSimplex.cpp:396:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                nnz[ind[k]] ++;
                ˜˜˜ ^˜˜˜˜˜
CglLandPSimplex.cpp:403:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rows_weights[i] = static_cast<double>(nnz[i]);
                                                      ˜˜˜ ^
CglLandPSimplex.cpp:421:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                nnz[ind[k]] ++;
                ˜˜˜ ^˜˜˜˜˜
CglLandPSimplex.cpp:442:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                nnz[ind[k]] ++;
                ˜˜˜ ^˜˜˜˜˜
CglLandPSimplex.cpp:448:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rows_weights[i] = 1./ static_cast<double> (nnz[i]);
                                                       ˜˜˜ ^
CglLandPSimplex.cpp:487:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        col_in_subspace.resize(ncols_orig_+nrows_orig_,true);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:499:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                if (getColsolToCut(ii) - up_bounds_[ii] > 1e-08 || getColsolToCut(ii) - lo_bounds_[ii] < 1e-08)
                                         ˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:499:100: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                if (getColsolToCut(ii) - up_bounds_[ii] > 1e-08 || getColsolToCut(ii) - lo_bounds_[ii] < 1e-08)
                                                                                        ˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:501:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    col_in_subspace[ii]=false;
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:541:27: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
            (cuts_.rowCut(iCol) != NULL) )
             ˜˜˜˜˜        ^˜˜˜
CglLandPSimplex.cpp:592:26: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
        if (cuts_.rowCut(iCol) == NULL || cut->effectiveness() > cuts_.rowCut(iCol)->effectiveness())
            ˜˜˜˜˜        ^˜˜˜
CglLandPSimplex.cpp:592:79: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
        if (cuts_.rowCut(iCol) == NULL || cut->effectiveness() > cuts_.rowCut(iCol)->effectiveness())
                                                                 ˜˜˜˜˜        ^˜˜˜
CglLandPSimplex.cpp:1261:27: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rWk1_[indices[k]] += normedCoef(elements[k] * sigma, ii);
                    ˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1270:27: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rWk1_[indices[k]] -= normedCoef(elements[k] * sigma, ii);
                    ˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1284:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk1_[ii - ncols_] += normedCoef(sigma, ii);
                ˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1292:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk1_[ii - ncols_] -= normedCoef(sigma, ii);
                ˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1313:27: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rWk1_[indices[k]] += elements[k] * (getColsolToCut(ii) - normedCoef(sigma, ii));
                    ˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1319:27: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                    rWk1_[indices[k]] -= elements[k] * (getColsolToCut(ii) - normedCoef(sigma, ii));
                    ˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1331:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk1_[ii - ncols_] += (getColsolToCut(ii) - normedCoef(sigma, ii));
                ˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1337:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk1_[ii - ncols_] -= (getColsolToCut(ii) - normedCoef(sigma, ii));
                ˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1346:13: warning: implicit conversion turns floating-point number into integer: 'value_type' (aka 'double') to 'bool' [-Wconversion]
        if (rWk1_[i])
        ˜˜  ^˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1346:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (rWk1_[i])
            ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1347:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rIntWork_[capacity++] = i;
            ˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜
CglLandPSimplex.cpp:1365:17: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (rWk1bis_[i])
            ˜˜  ^˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1366:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rIntWork_[capacity++] = i;
                ˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜
CglLandPSimplex.cpp:1404:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk2_[j] = - rWk2_[j];
                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1404:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk2_[j] = - rWk2_[j];
                             ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1405:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            if (rWk2_[j] > 0.)
                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1408:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk3_[j] -= normedCoef(sigma*rWk2_[j], ii);
                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1408:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk3_[j] -= normedCoef(sigma*rWk2_[j], ii);
                                             ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1410:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk4_[j] -= (getColsolToCut(ii) - normedCoef(sigma, ii))*rWk2_[j];
                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1410:80: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk4_[j] -= (getColsolToCut(ii) - normedCoef(sigma, ii))*rWk2_[j];
                                                                         ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1412:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            else if (rWk2_[j] < 0.)
                     ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1415:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk3_[j] -=(getColsolToCut(ii) - normedCoef(sigma, ii))*rWk2_[j];
                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1415:79: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk3_[j] -=(getColsolToCut(ii) - normedCoef(sigma, ii))*rWk2_[j];
                                                                        ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1418:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk4_[j] -= normedCoef(sigma, ii)*rWk2_[j];
                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1418:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                rWk4_[j] -= normedCoef(sigma, ii)*rWk2_[j];
                                                  ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1453:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                || col_in_subspace[basics_[i]] == false
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:1461:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        double tau1 = rWk1_[i];
                      ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1462:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        double tau2 = rWk1_[i];
                      ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1463:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        double tau3 = rWk1_[i];
                      ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1464:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        double tau4 = rWk1_[i];
                      ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1467:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau1 += rWk3_[i];
                    ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1468:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau2 += rWk4_[i];
                    ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1469:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau3 += rWk4_[i];
                    ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1470:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau4 += rWk3_[i];
                    ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1474:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau1 = rWk1_[i] + rWk3_[i];
                   ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1474:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau1 = rWk1_[i] + rWk3_[i];
                              ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1475:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau2 = rWk1bis_[i] + rWk3_[i];
                                 ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1476:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau3 = - rWk1_[i] - rWk4_[i];
                     ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1476:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau3 = - rWk1_[i] - rWk4_[i];
                                ˜˜˜˜˜ ^
CglLandPSimplex.cpp:1477:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            tau4 = - rWk1bis_[i] - rWk3_[i];
                                   ˜˜˜˜˜ ^
CglLandPSimplex.cpp:2339:29: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (col_in_subspace[jj]==false) continue;
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:2368:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (col_in_subspace[nonBasics_[j]]==false) {
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2395:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (col_in_subspace[basics_[row_i_.num]]==false)
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2415:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (col_in_subspace[nonBasics_[j]]==false) continue;
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2495:33: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            if (col_in_subspace[ii])
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:2507:33: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            if (col_in_subspace[ii])
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:2519:33: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            if (col_in_subspace[ii])
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
CglLandPSimplex.cpp:2609:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                vec[original_index_[nonBasics_[j]]] += value;
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2644:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            vec[original_index_[j]] -= vec[original_index_[ncols_ + indices[k]]] * values[k];
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:2644:67: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            vec[original_index_[j]] -= vec[original_index_[ncols_ + indices[k]]] * values[k];
                                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2752:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                        vec[original_index_[nonBasics_[j]]] = value;
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2769:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
                        vec[original_index_[nonBasics_[j]]] = value;
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
CglLandPSimplex.cpp:2814:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        double & val = vec[original_index_[j]];
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:3249:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (sortedIdx[k] == i)
            ˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:3255:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            original_index_[l] = original_index_[i];
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:3255:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            original_index_[l] = original_index_[i];
                                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:3264:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    std::vector<int> order(nrows_);
                     ˜˜˜˜˜ ^˜˜˜˜˜
CglLandPSimplex.cpp:3267:20: warning: implicit conversion changes signedness: 'unsigned int' to 'value_type' (aka 'int') [-Wsign-conversion]
        order[i] = i;
                 ˜ ^
CglLandPSimplex.cpp:3274:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (basics_[order[i]] == sortedIdx[k])
                    ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3274:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        if (basics_[order[i]] == sortedIdx[k])
                                 ˜˜˜˜˜˜˜˜˜ ^
CglLandPSimplex.cpp:3276:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            basics_[order[i]] = -1;
                    ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3281:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            order[l] = order[i];
            ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3281:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            order[l] = order[i];
                       ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3296:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk1_[l] = rWk1_[i];
            ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3296:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk1_[l] = rWk1_[i];
                       ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3297:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk2_[l] = rWk2_[i];
            ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3297:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk2_[l] = rWk2_[i];
                       ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3298:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk4_[l] = rWk3_[i];
            ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3298:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk4_[l] = rWk3_[i];
                       ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3299:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk4_[l] = rWk4_[i];
            ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3299:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            rWk4_[l] = rWk4_[i];
                       ˜˜˜˜˜ ^
CglLandPSimplex.cpp:3307:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    original_index_.resize(nrows_);
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLandPSimplex.cpp:11:
In file included from ./CglLandPSimplex.hpp:18:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
154 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandPValidator.lo CglLandPValidator.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandPValidator.cpp  -fno-common -DPIC -o CglLandPValidator.o
In file included from CglLandPValidator.cpp:11:
In file included from ./CglLandPValidator.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLandPValidator.cpp:11:
./CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
./CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CglLandPValidator.cpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLandPValidator.cpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglLandPValidator.cpp:11:
./CglLandPValidator.hpp:121:10: warning: private field 'scale_' is not used [-Wunused-private-field]
    bool scale_;
         ^
11 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglGomory` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLandPTest.lo CglLandPTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLandPTest.cpp  -fno-common -DPIC -o CglLandPTest.o
In file included from CglLandPTest.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLandPTest.cpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglLandPTest.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinWarmStartBasis.hpp:19:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglLandPTest.cpp:20:
In file included from ./CglLandP.hpp:14:
./CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
./CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CglLandPTest.cpp:20:
In file included from ./CglLandP.hpp:15:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglLandPTest.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLandPTest.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
26 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglLandP.la  -no-undefined -version-info 10:4:9 CglLandPUtils.lo CglLandP.lo CglLandPTabRow.lo CglLandPMessages.lo CglLandPSimplex.lo CglLandPValidator.lo CglLandPTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglLandP.a  CglLandPUtils.o CglLandP.o CglLandPTabRow.o CglLandPMessages.o CglLandPSimplex.o CglLandPValidator.o CglLandPTest.o
ranlib .libs/libCglLandP.a
creating libCglLandP.la
(cd .libs && rm -f libCglLandP.la && ln -s ../libCglLandP.la libCglLandP.la)
Making all in CglLiftAndProject
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglLiftAndProject.lo CglLiftAndProject.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglLiftAndProject.cpp  -fno-common -DPIC -o CglLiftAndProject.o
In file included from CglLiftAndProject.cpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglLiftAndProject.cpp:14:
In file included from ./CglLiftAndProject.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglLiftAndProject.cpp:14:
In file included from ./CglLiftAndProject.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglLiftAndProject.cpp:14:
In file included from ./CglLiftAndProject.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglLiftAndProject.cpp:14:
In file included from ./CglLiftAndProject.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglLiftAndProject.cpp:14:
In file included from ./CglLiftAndProject.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglLiftAndProject.la  -no-undefined -version-info 10:4:9 CglLiftAndProject.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglLiftAndProject.a  CglLiftAndProject.o
ranlib .libs/libCglLiftAndProject.a
creating libCglLiftAndProject.la
(cd .libs && rm -f libCglLiftAndProject.la && ln -s ../libCglLiftAndProject.la libCglLiftAndProject.la)
Making all in CglMixedIntegerRounding
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglMixedIntegerRounding.lo CglMixedIntegerRounding.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglMixedIntegerRounding.cpp  -fno-common -DPIC -o CglMixedIntegerRounding.o
In file included from CglMixedIntegerRounding.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglMixedIntegerRounding.cpp:21:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding.cpp:21:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding.cpp:21:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglMixedIntegerRounding.cpp:1451:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    } else if (value) {
           ˜˜  ^˜˜˜˜
In file included from CglMixedIntegerRounding.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglMixedIntegerRounding.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglMixedIntegerRounding.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglMixedIntegerRounding.cpp:266:14: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
    sense_ = CoinCopyOfArray(rhs.sense_,numRows_);
             ^
In file included from CglMixedIntegerRounding.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglMixedIntegerRounding.cpp:267:12: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    RHS_ = CoinCopyOfArray(rhs.RHS_,numRows_);
           ^
25 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglMixedIntegerRoundingTest.lo CglMixedIntegerRoundingTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglMixedIntegerRoundingTest.cpp  -fno-common -DPIC -o CglMixedIntegerRoundingTest.o
In file included from CglMixedIntegerRoundingTest.cpp:13:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglMixedIntegerRoundingTest.cpp:13:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRoundingTest.cpp:13:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglMixedIntegerRoundingTest.cpp:13:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRoundingTest.cpp:13:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglMixedIntegerRoundingTest.cpp:13:
In file included from ./CglMixedIntegerRounding.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglMixedIntegerRounding.la  -no-undefined -version-info 10:4:9 CglMixedIntegerRounding.lo CglMixedIntegerRoundingTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglMixedIntegerRounding.a  CglMixedIntegerRounding.o CglMixedIntegerRoundingTest.o
ranlib .libs/libCglMixedIntegerRounding.a
creating libCglMixedIntegerRounding.la
(cd .libs && rm -f libCglMixedIntegerRounding.la && ln -s ../libCglMixedIntegerRounding.la libCglMixedIntegerRounding.la)
Making all in CglMixedIntegerRounding2
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglMixedIntegerRounding2.lo CglMixedIntegerRounding2.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglMixedIntegerRounding2.cpp  -fno-common -DPIC -o CglMixedIntegerRounding2.o
In file included from CglMixedIntegerRounding2.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglMixedIntegerRounding2.cpp:21:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2.cpp:21:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2.cpp:21:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2.cpp:21:
In file included from ./CglMixedIntegerRounding2.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglMixedIntegerRounding2.cpp:989:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!setRowsAggregated.denseVector()[rowInd]) {
            ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglMixedIntegerRounding2.cpp:1500:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    } else if (value) {
           ˜˜  ^˜˜˜˜
In file included from CglMixedIntegerRounding2.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglMixedIntegerRounding2.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglMixedIntegerRounding2.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglMixedIntegerRounding2.cpp:268:20: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
    integerType_ = CoinCopyOfArray(rhs.integerType_,numCols_);
                   ^
In file included from CglMixedIntegerRounding2.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglMixedIntegerRounding2.cpp:282:12: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    RHS_ = CoinCopyOfArray(rhs.RHS_,numRows_);
           ^
29 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglMixedIntegerRounding2Test.lo CglMixedIntegerRounding2Test.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglMixedIntegerRounding2Test.cpp  -fno-common -DPIC -o CglMixedIntegerRounding2Test.o
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:195:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 assert (!elements_[index]);
                         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/assert.h:93:25: note: expanded from macro 'assert'
    (__builtin_expect(!(e), 0) ? __assert_rtn(__func__, __FILE__, __LINE__, #e) : (void)0)
                        ^
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglMixedIntegerRounding2Test.cpp:13:
In file included from ./CglMixedIntegerRounding2.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
26 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglMixedIntegerRounding2.la  -no-undefined -version-info 10:4:9 CglMixedIntegerRounding2.lo CglMixedIntegerRounding2Test.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglMixedIntegerRounding2.a  CglMixedIntegerRounding2.o CglMixedIntegerRounding2Test.o
ranlib .libs/libCglMixedIntegerRounding2.a
creating libCglMixedIntegerRounding2.la
(cd .libs && rm -f libCglMixedIntegerRounding2.la && ln -s ../libCglMixedIntegerRounding2.la libCglMixedIntegerRounding2.la)
Making all in CglOddHole
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglOddHole.lo CglOddHole.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglOddHole.cpp  -fno-common -DPIC -o CglOddHole.o
In file included from CglOddHole.cpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglOddHole.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglOddHole.cpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglOddHole.cpp:17:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglOddHole.cpp:56:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(checkRow,0,nRows*sizeof(int));
                      ^˜˜˜˜˜
CglOddHole.cpp:57:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(checkRow,suitableRows_,CoinMin(nRows,numberRows_)*sizeof(int));
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglOddHole.cpp:62:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(solution,si.getColSolution(),nCols*sizeof(double));
                                      ^˜˜˜˜˜
CglOddHole.cpp:201:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double * cost = reinterpret_cast<double *> (malloc(maxels*sizeof(double)));
                                                     ^˜˜˜˜˜˜
CglOddHole.cpp:203:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int * to= reinterpret_cast<int *> (malloc(maxels*sizeof(int)));
                                            ^˜˜˜˜˜˜
CglOddHole.cpp:205:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int * rowfound=reinterpret_cast<int *> (malloc(maxels*sizeof(int)));
                                                 ^˜˜˜˜˜˜
CglOddHole.cpp:211:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(mark,0,nSmall2*sizeof(int));
                ^˜˜˜˜˜˜˜
CglOddHole.cpp:223:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        cost=reinterpret_cast<double *> (realloc(cost,maxels*sizeof(double)));
                                                      ^˜˜˜˜˜˜
CglOddHole.cpp:224:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        to=reinterpret_cast<int *> (realloc(to,maxels*sizeof(int)));
                                               ^˜˜˜˜˜˜
CglOddHole.cpp:225:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        rowfound=reinterpret_cast<int *> (realloc(rowfound,maxels*sizeof(int)));
                                                           ^˜˜˜˜˜˜
CglOddHole.cpp:275:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    cost=reinterpret_cast<double *> (realloc(cost,maxels*sizeof(double)));
                                                  ^˜˜˜˜˜˜
CglOddHole.cpp:276:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    to=reinterpret_cast<int *> (realloc(to,maxels*sizeof(int)));
                                           ^˜˜˜˜˜˜
CglOddHole.cpp:277:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    rowfound=reinterpret_cast<int *> (realloc(rowfound,maxels*sizeof(int)));
                                                       ^˜˜˜˜˜˜
CglOddHole.cpp:323:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double * hash = reinterpret_cast<double *> (malloc(maxcuts*sizeof(double)));
                                                     ^˜˜˜˜˜˜˜
CglOddHole.cpp:331:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(mark,0,nSmall2*sizeof(int));
                ^˜˜˜˜˜˜˜
CglOddHole.cpp:333:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(countcol,0,nCols*sizeof(int));
                    ^˜˜˜˜˜
CglOddHole.cpp:505:9: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                  if (solution[jcol])
                  ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglOddHole.cpp:556:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                hash = reinterpret_cast<double *> (realloc(hash,maxcuts*sizeof(double)));
                                                                ^˜˜˜˜˜˜˜
CglOddHole.cpp:617:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(suitableRows_,possible,nRows*sizeof(int));
                                  ^˜˜˜˜˜
CglOddHole.cpp:664:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(suitableRows_,whichRow,numberRows*sizeof(int));
                                ^˜˜˜˜˜˜˜˜˜˜
CglOddHole.cpp:674:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(startClique_,cliqueStart,(numberCliques_+1)*sizeof(int));
                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglOddHole.cpp:677:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(member_,cliqueMember,length*sizeof(int));
                              ^˜˜˜˜˜˜
CglOddHole.cpp:724:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(suitableRows_,source.suitableRows_,numberRows_*sizeof(int));
                                              ^˜˜˜˜˜˜˜˜˜˜˜
CglOddHole.cpp:732:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(startClique_,source.startClique_,(numberCliques_+1)*sizeof(int));
                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglOddHole.cpp:735:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(member_,source.member_,length*sizeof(int));
                                  ^˜˜˜˜˜˜
CglOddHole.cpp:780:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(suitableRows_,rhs.suitableRows_,numberRows_*sizeof(int));
                                           ^˜˜˜˜˜˜˜˜˜˜˜
CglOddHole.cpp:787:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(startClique_,rhs.startClique_,(numberCliques_+1)*sizeof(int));
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglOddHole.cpp:790:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(member_,rhs.member_,length*sizeof(int));
                                 ^˜˜˜˜˜˜
In file included from CglOddHole.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglOddHole.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
50 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglOddHoleTest.lo CglOddHoleTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglOddHoleTest.cpp  -fno-common -DPIC -o CglOddHoleTest.o
In file included from CglOddHoleTest.cpp:16:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglOddHoleTest.cpp:16:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglOddHoleTest.cpp:16:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglOddHoleTest.cpp:16:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglOddHoleTest.cpp:16:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglOddHoleTest.cpp:16:
In file included from ./CglOddHole.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglOddHole.la  -no-undefined -version-info 10:4:9 CglOddHole.lo CglOddHoleTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglOddHole.a  CglOddHole.o CglOddHoleTest.o
ranlib .libs/libCglOddHole.a
creating libCglOddHole.la
(cd .libs && rm -f libCglOddHole.la && ln -s ../libCglOddHole.la libCglOddHole.la)
Making all in CglPreProcess
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglProbing` -I`echo ./../CglDuplicateRow` -I`echo ./../CglClique` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglPreProcess.lo CglPreProcess.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglProbing -I./../CglDuplicateRow -I./../CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglPreProcess.cpp  -fno-common -DPIC -o CglPreProcess.o
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiPresolve.hpp:167:54: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  { presolveActions_  = (presolveActions_&0xffff0000)|(action&0xffff);}
                      ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiPresolve.hpp:167:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  { presolveActions_  = (presolveActions_&0xffff0000)|(action&0xffff);}
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglPreProcess.cpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDenseFactorization.hpp:20:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglPreProcess.cpp:27:
./../CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
CglPreProcess.cpp:70:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(countRow,0,nRow*sizeof(int));
                    ^˜˜˜˜
CglPreProcess.cpp:71:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(countCol,0,nCol*sizeof(int));
                    ^˜˜˜˜
CglPreProcess.cpp:234:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(rhs,0,numberRows*sizeof(double));
                 ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:235:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(count,0,numberRows*sizeof(int));
                   ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:301:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memset(noGoodColumn,0,numberColumns);
    ˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:307:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if ((objValue||makeAll)&&!model->isInteger(iColumn)) {
             ^˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:308:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (objValue) {
          ˜˜  ^˜˜˜˜˜˜˜
CglPreProcess.cpp:470:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        } else if (objValue) {
               ˜˜  ^˜˜˜˜˜˜˜
CglPreProcess.cpp:490:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (objValue)
          ˜˜  ^˜˜˜˜˜˜˜
CglPreProcess.cpp:542:32: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          !model->isInteger(iColumn)&&objective[iColumn]) {
                                    ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:569:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (objValue)
          ˜˜  ^˜˜˜˜˜˜˜
CglPreProcess.cpp:573:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        } else if (objValue) {
               ˜˜  ^˜˜˜˜˜˜˜
CglPreProcess.cpp:803:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memset(size,0,nRowB*sizeof(int));
                            ^˜˜˜˜˜
CglPreProcess.cpp:827:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memset(best,0,nSet*sizeof(int));
                            ^˜˜˜˜
CglPreProcess.cpp:828:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memset(current,0,nSet*sizeof(int));
                               ^˜˜˜˜
CglPreProcess.cpp:849:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memcpy(best,current,nSet*sizeof(int));
                                        ^˜˜˜˜
CglPreProcess.cpp:889:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                memset(size,0,nSet*sizeof(int));
                              ^˜˜˜˜
CglPreProcess.cpp:907:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memset(split,0,nRowB*sizeof(int));
                             ^˜˜˜˜˜
CglPreProcess.cpp:929:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(whichCol,startCC,nColB*sizeof(int));
                                    ^˜˜˜˜˜
CglPreProcess.cpp:933:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memset(split,0,nRowB*sizeof(int));
                           ^˜˜˜˜˜
CglPreProcess.cpp:1033:37: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (upper[iColumn]>lower[iColumn]&&objective[iColumn]&&!model->isInteger(iColumn)) {
                                         ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1278:74: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (elementByRow[j]!=1.0||!originalModel_->isInteger(iColumn)||lower[iColumn]) {
                                                                       ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1320:71: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
              if (elementByRow[j]!=1.0||!originalModel_->isInteger(iColumn)||lower[iColumn]) {
                                                                           ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1323:12: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
              if (objective[iColumn])
              ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1352:10: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
            if (objective[iColumn]) {
            ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1377:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rowCount,0,numberRows*sizeof(int));
                        ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1449:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(newSolution,startModel_->getColSolution(),numberColumns*sizeof(double));
                                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1450:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(rowCount,0,numberRows*sizeof(int));
                          ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1510:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (columnElements[k])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1570:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(rhs,0,numberY*sizeof(double));
                     ^˜˜˜˜˜˜˜
CglPreProcess.cpp:1860:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(marked,0,numberColumns);
  ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:1970:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (move) {
        ˜˜  ^˜˜˜
CglPreProcess.cpp:2213:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(generator_+nAdd,temp,numberCutGenerators_*sizeof(CglCutGenerator *));
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2527:66: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (element[j]!=1.0||!returnModel->isInteger(iColumn)||columnLower[iColumn]) {
                                                               ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2535:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (objective[iColumn])
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2589:10: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
            if (objective[iColumn])
            ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2967:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(newLower,colLower,numberColumns*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2969:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(newUpper,colUpper,numberColumns*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2971:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(columnLower,colLower,numberColumns*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2973:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(columnUpper,colUpper,numberColumns*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:2978:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
  if (factor) {
  ˜˜  ^˜˜˜˜˜
CglPreProcess.cpp:3384:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                        if (colLower[iColumn]) 
                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:3388:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                        if (colUpper[iColumn]) 
                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:3395:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                        if (colLower[iColumn]) 
                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:3399:8: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                        if (colUpper[iColumn]) 
                        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:3403:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (rhsAdjust) {
                    ˜˜  ^˜˜˜˜˜˜˜˜
CglPreProcess.cpp:3851:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rowActivity,0,numberRows*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:4101:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(whichCut, 0, (numberRows+1)*sizeof(OsiRowCut *));
                       ˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglPreProcess.cpp:4176:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(marked,0,numberColumns*sizeof(int));
                    ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:4177:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(markRow,0,numberRows*sizeof(int));
                     ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:4584:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (value) {
                  ˜˜  ^˜˜˜˜
CglPreProcess.cpp:5559:7: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
                        if(columnLower[kInt]) {
                        ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:5601:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (!smallestSum&&interesting==2&&!saveLo&&saveUp>1.0e20) {
                          ˜^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:5601:44: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (!smallestSum&&interesting==2&&!saveLo&&saveUp>1.0e20) {
                                                        ˜^˜˜˜˜˜
CglPreProcess.cpp:5801:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memset(markLB,0,number01);
        ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜
CglPreProcess.cpp:5803:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memset(markUB,0,number01);
        ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜
CglPreProcess.cpp:6369:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(generator_,temp,numberCutGenerators_*sizeof(CglCutGenerator *));
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6464:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           nColumns*sizeof(int));
           ^˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6466:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           nRows*sizeof(int));
           ^˜˜˜˜˜
CglPreProcess.cpp:6738:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(changeRhs,0,numberRows*sizeof(double));
                     ^˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6739:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(ignore,0,numberRows);
  ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6816:56: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
          if (fabs(value1)==1.0&&value1*value2==-1.0&&!lower[jColumn1]
                                                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6817:18: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
              &&!lower[jColumn2]) {
                ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6835:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (!changeRhs[jRow]) {
                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6849:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (value) {
                ˜˜  ^˜˜˜˜
CglPreProcess.cpp:6943:39: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (solver->isInteger(iColumn)&&objective[iColumn])
                                    ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6995:28: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(numberInColumn,0,3*numberColumns);
  ˜˜˜˜˜˜                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:7297:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(mark_,0,numberColumns_);
  ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglPreProcess.cpp:7609:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    hashValue = (xx.i[0] + xx.i[1]);
              ˜  ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
CglPreProcess.cpp:7616:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  return hashValue%(size);
  ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
CglPreProcess.cpp:7616:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  return hashValue%(size);
                  ˜ ^˜˜˜
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglPreProcess.cpp:1869:18: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
  double * obj = CoinCopyOfArray(startModel_->getObjCoefficients(),numberColumns);
                 ^
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglPreProcess.cpp:5639:18: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
                  int * cols = CoinCopyOfArray(column+start,length);
                               ^
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:205:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,copySize*sizeof(T));
                                   ^˜˜˜˜˜˜˜˜
CglPreProcess.cpp:6109:21: note: in instantiation of function template specialization 'CoinCopyOfArrayPartial<char>' requested here
      char * temp = CoinCopyOfArrayPartial(rowType_,numberRows,numberRowType_);
                    ^
In file included from CglPreProcess.cpp:13:
In file included from ./CglPreProcess.hpp:13:
In file included from ../CglStored.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglPreProcess.cpp:6230:17: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
  prohibited_ = CoinCopyOfArray(rhs.prohibited_,numberProhibited_);
                ^
103 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglPreProcess.la  -no-undefined -version-info 10:4:9 CglPreProcess.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglPreProcess.a  CglPreProcess.o
ranlib .libs/libCglPreProcess.a
creating libCglPreProcess.la
(cd .libs && rm -f libCglPreProcess.la && ln -s ../libCglPreProcess.la libCglPreProcess.la)
Making all in CglProbing
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglProbing.lo CglProbing.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglProbing.cpp  -fno-common -DPIC -o CglProbing.o
In file included from CglProbing.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglProbing.cpp:21:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglProbing.cpp:21:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglProbing.cpp:22:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglProbing.cpp:22:
./CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
CglProbing.cpp:65:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    hashValue = (xx.i[0] + xx.i[1]);
              ˜  ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
CglProbing.cpp:72:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  return hashValue%(size);
  ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
CglProbing.cpp:72:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  return hashValue%(size);
                  ˜ ^˜˜˜
CglProbing.cpp:1419:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(changeRhs,0,numberRows*sizeof(double));
                     ^˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:1420:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(ignore,0,numberRows);
  ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:1494:56: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (fabs(value1)==1.0&&value1*value2==-1.0&&!lower[jColumn1]
                                                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:1495:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              &&!lower[jColumn2]&&columnLength[jColumn1]==1&&columnLength[jColumn2]==1) {
                ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:1513:22: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (!changeRhs[jRow]) {
                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:1527:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                if (value) {
                ˜˜  ^˜˜˜˜
CglProbing.cpp:1767:6: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
        if (objective[i]) {
        ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:1910:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (effectiveness) {
          ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2044:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (offset) {
      ˜˜  ^˜˜˜˜˜
CglProbing.cpp:2282:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!rcut.ub()) {
              ˜^˜˜˜˜˜˜˜˜
CglProbing.cpp:2322:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!lb) {
              ˜^˜
CglProbing.cpp:2386:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!rcut.ub()) {
              ˜^˜˜˜˜˜˜˜˜
CglProbing.cpp:2472:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (!lb) {
              ˜^˜
CglProbing.cpp:2548:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          sortit[k]=(affected<<3)|(zeroOne<<2)|(whenAtUB<<1)|affectedToUB;
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2551:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        int affectedLast = 0xffffffff;
            ˜˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2823:24: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (!colLower[icol]) {
                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2846:34: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (icol >j && colUpper[icol] ) {
                              ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2848:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!colLower[icol]) {
                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2867:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (infeasibility) {
              ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:2914:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(colLower,trueLower,nCols*sizeof(double));
                              ^˜˜˜˜˜
CglProbing.cpp:2915:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(colUpper,trueUpper,nCols*sizeof(double));
                              ^˜˜˜˜˜
CglProbing.cpp:2958:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  nSpace += (4*nCols+nRows+maxStack+DIratio-1)>>(DIratio-1);
             ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:3144:54: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (numberInt==1&&numberNeg==0&&intValue<0.0&&!rowUpper[iRow]&&rowLower[iRow]<-1.0e30&&!sumFixed) {
                                                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:3144:95: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (numberInt==1&&numberNeg==0&&intValue<0.0&&!rowUpper[iRow]&&rowLower[iRow]<-1.0e30&&!sumFixed) {
                                                                                             ˜^˜˜˜˜˜˜˜
CglProbing.cpp:3151:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (colLower[jColumn]||colUpper[jColumn]>1.0)
                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:3232:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(lookedAt_+maxProbe,stackC,k*sizeof(int));
                                           ^˜
CglProbing.cpp:3258:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(lookedAt_+maxProbe,stackC,k*sizeof(int));
                                           ^˜
CglProbing.cpp:3362:61: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (goingToTrueBound&&(colUpper[j]-colLower[j]>1.5||colLower[j]))
                                                          ˜˜^˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:3711:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveUp&&!moveDown)
                        ˜^˜˜˜˜˜
CglProbing.cpp:3711:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveUp&&!moveDown)
                                 ˜^˜˜˜˜˜˜˜
CglProbing.cpp:3717:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveUp&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜
CglProbing.cpp:3785:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveDown&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:3894:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveUp)
                        ˜^˜˜˜˜˜
CglProbing.cpp:3900:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveUp&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜
CglProbing.cpp:4009:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveDown)
                        ˜^˜˜˜˜˜˜˜
CglProbing.cpp:4015:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveDown&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:4153:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveUp&&!moveDown)
                        ˜^˜˜˜˜˜
CglProbing.cpp:4153:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveUp&&!moveDown)
                                 ˜^˜˜˜˜˜˜˜
CglProbing.cpp:4159:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveUp&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜
CglProbing.cpp:4229:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveDown&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:4338:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveDown)
                        ˜^˜˜˜˜˜˜˜
CglProbing.cpp:4453:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!moveUp)
                        ˜^˜˜˜˜˜
CglProbing.cpp:4563:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!colUpper[icol]&&!saveL[istackC]&&saveU[istackC]==1.0) {
                  ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:4563:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (!colUpper[icol]&&!saveL[istackC]&&saveU[istackC]==1.0) {
                                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:4584:52: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
              if (colUpper[icol]-colLower[icol]<1.0e-12&&!saveL[istackC]&&saveU[istackC]==1.0) {
                                                         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:4740:29: warning: use of unary operator that may be intended as compound assignment (-=)
                  element[1]=- boundChange;
                            ^˜
CglProbing.cpp:5479:24: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (!sum) {
                      ˜^˜˜
CglProbing.cpp:5611:43: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (colUpper[j]>colLower[j]&&!colLower[j]&&
                                         ˜^˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:5949:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(djs,0,nCols*sizeof(double));
                 ^˜˜˜˜˜
CglProbing.cpp:6070:56: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
          if (goingToTrueBound&&(colUpper[j]-colLower[j]>1.5||colLower[j]))
                                                            ˜˜^˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:6317:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (colLower[kcol])
                      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:6454:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveUp&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜
CglProbing.cpp:6535:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (moveDown&&nstackC<2*maxStack) {
                        ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:6759:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (colLower[icol]) {
                      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:6830:17: warning: use of unary operator that may be intended as compound assignment (-=)
                    element[1]=- boundChange;
                              ^˜
CglProbing.cpp:6961:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!sum) {
                        ˜^˜˜
CglProbing.cpp:7128:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                      if (colLower[icol]) {
                      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:7232:40: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
                      cliqueAdd[numberCliqueAdded]=j|0x80000000;
                                                  ˜˜^˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:7232:39: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                      cliqueAdd[numberCliqueAdded]=j|0x80000000;
                                                   ^˜
CglProbing.cpp:7327:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!sum) {
                        ˜^˜˜
CglProbing.cpp:7421:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(cliqueCount,0,numberCliques_*sizeof(int));
                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:7434:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        bool oneFixes = ((cliqueAdd[nAdd2]&0x80000000)!=0);
                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:7894:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (colLower[kcol])
                    ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:8028:23: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (moveUp&&nstackC<2*maxStack) {
                      ^˜˜˜˜˜˜˜
CglProbing.cpp:8098:23: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (moveDown&&nstackC<2*maxStack) {
                      ^˜˜˜˜˜˜˜˜˜
CglProbing.cpp:8372:24: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                  if (!sum) {
                      ˜^˜˜
CglProbing.cpp:8614:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                    if (!sum) {
                        ˜^˜˜
CglProbing.cpp:8818:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(cutVector_,0,number01Integers_*sizeof(disaggregation));
                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:8855:11: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (objective[i]) {
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜
CglProbing.cpp:9979:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(tightenBounds_,0,numberColumns);
  ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglProbing.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglProbing.cpp:18:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglProbing.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglProbing.cpp:1658:19: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
  char * intVar = CoinCopyOfArray(intVarOriginal,nCols);
                  ^
In file included from CglProbing.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglProbing.cpp:9145:24: note: in instantiation of function template specialization 'CoinCopyOfArray<disaggregationAction>' requested here
        cutVector_[i].index = CoinCopyOfArray(rhs.cutVector_[i].index,cutVector_[i].length);
                              ^
In file included from CglProbing.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglProbing.cpp:9162:15: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    lookedAt_=CoinCopyOfArray(rhs.lookedAt_,numberColumns_);
              ^
In file included from CglProbing.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglProbing.cpp:9194:20: note: in instantiation of function template specialization 'CoinCopyOfArray<CliqueEntry>' requested here
      cliqueRow_ = CoinCopyOfArray(rhs.cliqueRow_,n);
                   ^
100 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglProbingTest.lo CglProbingTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglProbingTest.cpp  -fno-common -DPIC -o CglProbingTest.o
In file included from CglProbingTest.cpp:15:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglProbingTest.cpp:15:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglProbingTest.cpp:15:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglProbingTest.cpp:15:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglProbingTest.cpp:15:
./CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglProbingTest.cpp:15:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglProbingTest.cpp:15:
In file included from ./CglProbing.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
23 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglProbing.la  -no-undefined -version-info 10:4:9 CglProbing.lo CglProbingTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglProbing.a  CglProbing.o CglProbingTest.o
ranlib .libs/libCglProbing.a
creating libCglProbing.la
(cd .libs && rm -f libCglProbing.la && ln -s ../libCglProbing.la libCglProbing.la)
Making all in CglRedSplit
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplit.lo CglRedSplit.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplit.cpp  -fno-common -DPIC -o CglRedSplit.o
In file included from CglRedSplit.cpp:25:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglRedSplit.cpp:28:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglRedSplit.cpp:31:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglRedSplit.cpp:32:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglRedSplit.cpp:35:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglRedSplit.cpp:58:42: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  *v = reinterpret_cast<int **> (calloc (m, sizeof(int *)));
                                 ˜˜˜˜˜˜  ^
CglRedSplit.cpp:65:48: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    (*v)[i] = reinterpret_cast<int *> (calloc (n, sizeof(int)));
                                       ˜˜˜˜˜˜  ^
CglRedSplit.cpp:89:45: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  *v = reinterpret_cast<double **> (calloc (m, sizeof(double *)));
                                    ˜˜˜˜˜˜  ^
CglRedSplit.cpp:96:51: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    (*v)[i] = reinterpret_cast<double *> (calloc (n, sizeof(double)));
                                          ˜˜˜˜˜˜  ^
In file included from CglRedSplit.cpp:29:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglRedSplit.cpp:29:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
29 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplitTest.lo CglRedSplitTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplitTest.cpp  -fno-common -DPIC -o CglRedSplitTest.o
In file included from CglRedSplitTest.cpp:22:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglRedSplitTest.cpp:22:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglRedSplitTest.cpp:22:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglRedSplitTest.cpp:22:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglRedSplitTest.cpp:22:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglRedSplitTest.cpp:22:
In file included from ./CglRedSplit.hpp:18:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplitParam.lo CglRedSplitParam.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplitParam.cpp  -fno-common -DPIC -o CglRedSplitParam.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglRedSplit.la  -no-undefined -version-info 10:4:9 CglRedSplit.lo CglRedSplitTest.lo CglRedSplitParam.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglRedSplit.a  CglRedSplit.o CglRedSplitTest.o CglRedSplitParam.o
ranlib .libs/libCglRedSplit.a
creating libCglRedSplit.la
(cd .libs && rm -f libCglRedSplit.la && ln -s ../libCglRedSplit.la libCglRedSplit.la)
Making all in CglRedSplit2
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplit2.lo CglRedSplit2.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplit2.cpp  -fno-common -DPIC -o CglRedSplit2.o
In file included from CglRedSplit2.cpp:37:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglRedSplit2.cpp:39:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglRedSplit2.cpp:39:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglRedSplit2.cpp:39:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglRedSplit2.cpp:42:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglRedSplit2.cpp:99:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  *v = reinterpret_cast<int **> (calloc (m, sizeof(int *)));
                                 ˜˜˜˜˜˜  ^
CglRedSplit2.cpp:106:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    (*v)[i] = reinterpret_cast<int *> (calloc (n, sizeof(int)));
                                       ˜˜˜˜˜˜  ^
CglRedSplit2.cpp:126:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  *v = reinterpret_cast<double **> (calloc (m, sizeof(double *)));
                                    ˜˜˜˜˜˜  ^
CglRedSplit2.cpp:133:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    (*v)[i] = reinterpret_cast<double *> (calloc (n, sizeof(double)));
                                          ˜˜˜˜˜˜  ^
CglRedSplit2.cpp:331:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    else if (sum) ii=i;
         ˜˜  ^˜˜
CglRedSplit2.cpp:419:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(array, counter, sizeof(struct sortElement), rs2_compareElements);
    ˜˜˜˜˜        ^˜˜˜˜˜˜
CglRedSplit2.cpp:647:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(array, counter, sizeof(struct sortElement), rs2_compareElements);
    ˜˜˜˜˜        ^˜˜˜˜˜˜
CglRedSplit2.cpp:717:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             card_contNonBasicVar*sizeof(double));
             ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglRedSplit2.cpp:747:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(array,pos,sizeof(struct sortElement),rs2_compareElements);
    ˜˜˜˜˜       ^˜˜
CglRedSplit2.cpp:1068:11: warning: implicit conversion turns floating-point number into integer: 'const double' to 'bool' [-Wconversion]
      if (values[j]) {
      ˜˜  ^˜˜˜˜˜˜˜˜
CglRedSplit2.cpp:1251:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(row, 0, (ncol+nrow)*sizeof(double));
                  ˜˜˜˜^˜˜˜˜ ˜
CglRedSplit2.cpp:1338:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (value) {
    ˜˜  ^˜˜˜˜
CglRedSplit2.cpp:1795:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(cv_fracRowsTab, 0, mTab*sizeof(int));
                            ^˜˜˜˜
CglRedSplit2.cpp:1897:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (fabs(values[j]))
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglRedSplit2.cpp:1966:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(bufflambda, 0, maxNumComputedCuts*nrow*sizeof(int));
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
CglRedSplit2.cpp:1969:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(bufflambda, 0, maxNumCuts*nrow*sizeof(int));
                            ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
CglRedSplit2.cpp:2017:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(pi_mat[i], 0, mTab*sizeof(int));
                               ^˜˜˜˜
CglRedSplit2.cpp:2045:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memset(pi_mat[i], 0, mTab*sizeof(int));
                                   ^˜˜˜˜
CglRedSplit2.cpp:2120:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      qsort(quality, numCuts, sizeof(struct sortElement), rs2_compareElements);
      ˜˜˜˜˜          ^˜˜˜˜˜˜
CglRedSplit2.cpp:2133:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               sizeof(int)*nrow);
                          ˜^˜˜˜
CglRedSplit2.cpp:2687:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(cv_fracRowsTab, 0, mTab*sizeof(int));
                            ^˜˜˜˜
CglRedSplit2.cpp:2859:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memset(pi_mat[i], 0, mTab*sizeof(int));
                               ^˜˜˜˜
In file included from CglRedSplit2.cpp:39:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglRedSplit2.cpp:39:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
47 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplit2Test.lo CglRedSplit2Test.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplit2Test.cpp  -fno-common -DPIC -o CglRedSplit2Test.o
In file included from CglRedSplit2Test.cpp:10:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglRedSplit2Test.cpp:10:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglRedSplit2Test.cpp:10:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglRedSplit2Test.cpp:10:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglRedSplit2Test.cpp:10:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglRedSplit2Test.cpp:10:
In file included from ./CglRedSplit2.hpp:16:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplit2Param.lo CglRedSplit2Param.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplit2Param.cpp  -fno-common -DPIC -o CglRedSplit2Param.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglRedSplit2.la  -no-undefined -version-info 10:4:9 CglRedSplit2.lo CglRedSplit2Test.lo CglRedSplit2Param.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglRedSplit2.a  CglRedSplit2.o CglRedSplit2Test.o CglRedSplit2Param.o
ranlib .libs/libCglRedSplit2.a
creating libCglRedSplit2.la
(cd .libs && rm -f libCglRedSplit2.la && ln -s ../libCglRedSplit2.la libCglRedSplit2.la)
Making all in CglResidualCapacity
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglResidualCapacity.lo CglResidualCapacity.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglResidualCapacity.cpp  -fno-common -DPIC -o CglResidualCapacity.o
In file included from CglResidualCapacity.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglResidualCapacity.cpp:21:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglResidualCapacity.cpp:21:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglResidualCapacity.cpp:21:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglResidualCapacity.cpp:603:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            const int newRowPosition=setSbar[i];
                                     ˜˜˜˜˜˜˜ ^
CglResidualCapacity.cpp:613:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
            const int originalRowPosition=positionIntVar[i];
                                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
In file included from CglResidualCapacity.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglResidualCapacity.cpp:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglResidualCapacity.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglResidualCapacity.cpp:202:14: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
    sense_ = CoinCopyOfArray(rhs.sense_,numRows_);
             ^
In file included from CglResidualCapacity.cpp:17:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglResidualCapacity.cpp:203:12: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    RHS_ = CoinCopyOfArray(rhs.RHS_,numRows_);
           ^
26 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglResidualCapacityTest.lo CglResidualCapacityTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglResidualCapacityTest.cpp  -fno-common -DPIC -o CglResidualCapacityTest.o
In file included from CglResidualCapacityTest.cpp:13:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglResidualCapacityTest.cpp:13:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglResidualCapacityTest.cpp:13:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglResidualCapacityTest.cpp:13:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglResidualCapacityTest.cpp:13:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglResidualCapacityTest.cpp:13:
In file included from ./CglResidualCapacity.hpp:21:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglResidualCapacity.la  -no-undefined -version-info 10:4:9 CglResidualCapacity.lo CglResidualCapacityTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglResidualCapacity.a  CglResidualCapacity.o CglResidualCapacityTest.o
ranlib .libs/libCglResidualCapacity.a
creating libCglResidualCapacity.la
(cd .libs && rm -f libCglResidualCapacity.la && ln -s ../libCglResidualCapacity.la libCglResidualCapacity.la)
Making all in CglSimpleRounding
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglSimpleRounding.lo CglSimpleRounding.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglSimpleRounding.cpp  -fno-common -DPIC -o CglSimpleRounding.o
In file included from CglSimpleRounding.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglSimpleRounding.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglSimpleRounding.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglSimpleRounding.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglSimpleRounding.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglSimpleRounding.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglSimpleRoundingTest.lo CglSimpleRoundingTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglSimpleRoundingTest.cpp  -fno-common -DPIC -o CglSimpleRoundingTest.o
In file included from CglSimpleRoundingTest.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglSimpleRoundingTest.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglSimpleRoundingTest.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglSimpleRoundingTest.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglSimpleRoundingTest.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglSimpleRoundingTest.cpp:13:
In file included from ./CglSimpleRounding.hpp:11:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglSimpleRounding.la  -no-undefined -version-info 10:4:9 CglSimpleRounding.lo CglSimpleRoundingTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglSimpleRounding.a  CglSimpleRounding.o CglSimpleRoundingTest.o
ranlib .libs/libCglSimpleRounding.a
creating libCglSimpleRounding.la
(cd .libs && rm -f libCglSimpleRounding.la && ln -s ../libCglSimpleRounding.la libCglSimpleRounding.la)
Making all in CglTwomir
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglTwomir.lo CglTwomir.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglTwomir.cpp  -fno-common -DPIC -o CglTwomir.o
In file included from CglTwomir.cpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglTwomir.cpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglTwomir.cpp:17:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglTwomir.cpp:17:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglTwomir.cpp:24:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglTwomir.cpp:28:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CglTwomir.cpp:28:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CglTwomir.cpp:144:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(simplex->columnLower(),colLower,numberColumns*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:145:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(simplex->columnUpper(),colUpper,numberColumns*sizeof(double));
                                             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:176:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(copy,0,numberRows-numberOriginalRows);
      ˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:257:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             numberColumns*sizeof(double));
             ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:340:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (!cut->coeff[i])
            ˜^˜˜˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:438:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(simplex->objective(),objective,numberColumns*sizeof(double));
                                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:461:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (!sum) {
          ˜^˜˜
CglTwomir.cpp:664:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  data->info = reinterpret_cast<int*> (malloc( sizeof(int)*(data->ncol+data->nrow)) );
                                                          ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:665:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  data->lb = reinterpret_cast<double*> (malloc( sizeof(double)*(data->ncol+data->nrow)) );
                                                              ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:666:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  data->ub = reinterpret_cast<double*> (malloc( sizeof(double)*(data->ncol+data->nrow)) );
                                                              ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:667:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  data->x  = reinterpret_cast<double*> (malloc( sizeof(double)*(data->ncol+data->nrow)) );
                                                              ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:668:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  data->rc = reinterpret_cast<double*> (malloc( sizeof(double)*(data->ncol+data->nrow)) );
                                                              ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:670:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(data->info, 0, sizeof(int)*(data->ncol+data->nrow));
                                   ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:921:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  value = reinterpret_cast<double*>(malloc(sizeof(double)*(data->nrow+data->ncol)));
                                                         ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:922:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(value, 0, sizeof(double)*(data->nrow+data->ncol));
                                 ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:1006:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tabrow->coeff = reinterpret_cast<double*> (malloc(sizeof(double)*nz));
                                                                  ˜^˜
CglTwomir.cpp:1007:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tabrow->index = reinterpret_cast<int*> (malloc(sizeof(int)*nz));
                                                            ˜^˜
CglTwomir.cpp:1103:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   c->coeff = reinterpret_cast<double*>(malloc(sizeof(double)*max_arrays));
                                                             ˜^˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:1104:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   c->index = reinterpret_cast<int*>(malloc(sizeof(int)*max_arrays));
                                                       ˜^˜˜˜˜˜˜˜˜˜
CglTwomir.cpp:1128:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(nc->coeff, c->coeff, sizeof(double)*nc->nz);
                                            ˜˜˜˜˜^˜
CglTwomir.cpp:1129:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(nc->index, c->index, sizeof(int)*nc->nz);
                                         ˜˜˜˜˜^˜
CglTwomir.cpp:1164:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l->c = reinterpret_cast<DGG_constraint_t **>(realloc (l->c, l->n * sizeof(DGG_constraint_t *)));
                                                              ˜˜˜^ ˜
CglTwomir.cpp:1165:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l->ctype = reinterpret_cast<int *>(realloc (l->ctype, l->n * sizeof (int)));
                                                        ˜˜˜^ ˜
CglTwomir.cpp:1166:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l->alpha = reinterpret_cast<double *>(realloc (l->alpha, l->n * sizeof (double)));
                                                           ˜˜˜^ ˜
CglTwomir.cpp:1207:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double *px = reinterpret_cast<double*> (malloc( sizeof(double)*constraint->max_nz ));
                                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
CglTwomir.cpp:1208:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  double *rc = reinterpret_cast<double*> (malloc( sizeof(double)*constraint->max_nz ));
                                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
CglTwomir.cpp:1209:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  char   *pi = reinterpret_cast<char*>   (malloc( sizeof(char)  *constraint->max_nz ));
                                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
CglTwomir.cpp:1279:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  lcut = reinterpret_cast<double*>(malloc(sizeof(double)*data->ncol)); 
                                                        ˜˜˜˜˜˜˜^˜˜˜
CglTwomir.cpp:1280:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(lcut, 0, sizeof(double)*data->ncol);
                                ˜˜˜˜˜˜˜^˜˜˜
CglTwomir.cpp:1315:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      cut->coeff = reinterpret_cast<double*> (malloc( sizeof(double)*lnz ));
                                                                    ˜^˜˜
CglTwomir.cpp:1316:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      cut->index = reinterpret_cast<int*> (malloc( sizeof(int)*lnz ));
                                                              ˜^˜˜
CglTwomir.cpp:1416:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  rowIsBasic = reinterpret_cast<int*>(malloc(sizeof(int)*data->nrow));
                                                        ˜˜˜˜˜˜˜^˜˜˜
CglTwomir.cpp:1417:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  colIsBasic = reinterpret_cast<int*>(malloc(sizeof(int)*data->ncol));
                                                        ˜˜˜˜˜˜˜^˜˜˜
CglTwomir.cpp:1522:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  int* skala_list = reinterpret_cast<int*> (malloc( sizeof(int)*base->nz ));
                                                               ˜˜˜˜˜˜˜^˜
In file included from CglTwomir.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglTwomir.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglTwomir.cpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglTwomir.cpp:159:19: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
      objective = CoinCopyOfArray(obj,numberColumns);
                  ^
67 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglTwomirTest.lo CglTwomirTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglTwomirTest.cpp  -fno-common -DPIC -o CglTwomirTest.o
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
In file included from ../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:10:
../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:195:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 assert (!elements_[index]);
                         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/assert.h:93:25: note: expanded from macro 'assert'
    (__builtin_expect(!(e), 0) ? __assert_rtn(__func__, __FILE__, __LINE__, #e) : (void)0)
                        ^
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglTwomirTest.cpp:14:
In file included from ./CglTwomir.hpp:10:
In file included from ../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
26 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglTwomir.la  -no-undefined -version-info 10:4:9 CglTwomir.lo CglTwomirTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglTwomir.a  CglTwomir.o CglTwomirTest.o
ranlib .libs/libCglTwomir.a
creating libCglTwomir.la
(cd .libs && rm -f libCglTwomir.la && ln -s ../libCglTwomir.la libCglTwomir.la)
Making all in CglZeroHalf
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglZeroHalf.lo CglZeroHalf.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglZeroHalf.cpp  -fno-common -DPIC -o CglZeroHalf.o
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
In file included from ./../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
./../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglZeroHalf.cpp:465:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(mtind_+mnz_,mtind_+mnz_-k,k*sizeof(int));
                                           ^˜
CglZeroHalf.cpp:466:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(mtval_+mnz_,mtval_+mnz_-k,k*sizeof(int));
                                           ^˜
CglZeroHalf.cpp:377:7: warning: unused variable 'saveMnz' [-Wunused-variable]
  int saveMnz=mnz_;
      ^
CglZeroHalf.cpp:376:7: warning: unused variable 'saveMr' [-Wunused-variable]
  int saveMr=mr_;
      ^
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
In file included from ./../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglZeroHalf.cpp:181:14: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
    mtbeg_ = CoinCopyOfArray(source.mtbeg_,mr_);
             ^
In file included from CglZeroHalf.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
In file included from ./../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglZeroHalf.cpp:188:15: note: in instantiation of function template specialization 'CoinCopyOfArray<char>' requested here
    msense_ = CoinCopyOfArray(source.msense_,mr_);
              ^
28 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o Cgl012cut.lo Cgl012cut.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c Cgl012cut.cpp  -fno-common -DPIC -o Cgl012cut.o
In file included from Cgl012cut.cpp:9:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Cgl012cut.cpp:9:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Cgl012cut.cpp:9:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
In file included from ./../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Cgl012cut.cpp:9:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
./../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
Cgl012cut.cpp:222:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->mtbeg = reinterpret_cast<int *> (calloc(mr,sizeof(int))); 
                                          ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:224:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->mtcnt = reinterpret_cast<int *> (calloc(mr,sizeof(int)));
                                          ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:226:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->mtind = reinterpret_cast<int *> (calloc(mnz,sizeof(int)));
                                          ˜˜˜˜˜˜ ^˜˜
Cgl012cut.cpp:228:55: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->mrhs = reinterpret_cast<short int *> (calloc(mr,sizeof(short int)));
                                               ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:230:53: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->xstar = reinterpret_cast<double *> (calloc(mc,sizeof(double)));
                                             ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:232:53: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->slack = reinterpret_cast<double *> (calloc(mr,sizeof(double)));
                                             ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:234:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->row_to_delete = reinterpret_cast<short int *> (calloc(mr,sizeof(short int)));
                                                        ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:236:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->col_to_delete = reinterpret_cast<short int *> (calloc(mc,sizeof(short int)));
                                                        ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:238:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->gcd = reinterpret_cast<int *> (calloc(mr,sizeof(int)));
                                        ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:240:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->possible_weak = reinterpret_cast<short int *> (calloc(mc,sizeof(short int)));
                                                        ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:242:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->type_even_weak = reinterpret_cast<short int *> (calloc(mc,sizeof(short int)));
                                                         ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:244:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->type_odd_weak = reinterpret_cast<short int *> (calloc(mc,sizeof(short int)));
                                                        ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:246:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->loss_even_weak = reinterpret_cast<double *> (calloc(mc,sizeof(double)));
                                                      ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:248:61: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->loss_odd_weak = reinterpret_cast<double *> (calloc(mc,sizeof(double)));
                                                     ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:250:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  p_ilp->min_loss_by_weak = reinterpret_cast<double *> (calloc(mc,sizeof(double)));
                                                        ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:312:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    i_weak->var = reinterpret_cast<int *> (calloc(nweak,sizeof(int)));
                                           ˜˜˜˜˜˜ ^˜˜˜˜
Cgl012cut.cpp:314:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    i_weak->type = reinterpret_cast<short int *> (calloc(nweak,sizeof(short int)));
                                                  ˜˜˜˜˜˜ ^˜˜˜˜
Cgl012cut.cpp:614:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  nodes = reinterpret_cast<int *> (calloc(maxnodes,sizeof(int)));
                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
Cgl012cut.cpp:616:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  ind = reinterpret_cast<int *> (calloc(maxnodes,sizeof(int)));
                                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
Cgl012cut.cpp:633:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s_graph->nodes = reinterpret_cast<int *> (malloc(nnodes*sizeof(int)));
                                                   ^˜˜˜˜˜˜
Cgl012cut.cpp:637:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s_graph->ind = reinterpret_cast<int *> (malloc(maxnodes*sizeof(int)));
                                                 ^˜˜˜˜˜˜˜˜
Cgl012cut.cpp:642:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s_graph->even_adj_list = reinterpret_cast<edge **> (malloc(maxedges*sizeof(edge *)));
                                                             ^˜˜˜˜˜˜˜˜
Cgl012cut.cpp:644:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s_graph->odd_adj_list = reinterpret_cast<edge **> (malloc(maxedges*sizeof(edge *)));
                                                            ^˜˜˜˜˜˜˜˜
Cgl012cut.cpp:786:74: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  a_graph->nodes = reinterpret_cast<cgl_node *> (calloc((a_graph->nnodes + 1),sizeof(cgl_node)));
                                                 ˜˜˜˜˜˜  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Cgl012cut.cpp:792:73: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  a_graph->arcs = reinterpret_cast<cgl_arc *> (calloc(((a_graph->narcs) + 1),sizeof(cgl_arc)));
                                               ˜˜˜˜˜˜  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Cgl012cut.cpp:1020:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cnt = reinterpret_cast<int *> (calloc(maxnodes+1,sizeof(int)));
                                 ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1100:59: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  s_cycle_list->list = reinterpret_cast<cycle **> (calloc(max_cyc,sizeof(cycle *)));
                                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Cgl012cut.cpp:1239:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    reinterpret_cast<short_path_node *> (calloc(a_graph->nnodes,sizeof(short_path_node)));
                                         ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
Cgl012cut.cpp:1259:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    reinterpret_cast<short_path_node *> (calloc(a_graph->nnodes,sizeof(short_path_node)));
                                         ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
Cgl012cut.cpp:1338:61: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            s_cycle->edge_list = reinterpret_cast<edge **> (calloc(totedges,sizeof(edge *)));
                                                            ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
Cgl012cut.cpp:1399:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cuts->list = reinterpret_cast<cut **> (calloc(max_cut,sizeof(cut *)));
                                         ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Cgl012cut.cpp:1475:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ccoef,0,inp_ilp->mc*sizeof(int));
                 ˜˜˜˜˜˜˜˜˜^˜˜
Cgl012cut.cpp:1535:59: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  vars_to_weak = reinterpret_cast<int *> (calloc(inp_ilp->mc,sizeof(int)));
                                          ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1620:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  v_cut->cind = reinterpret_cast<int *> (calloc(cnzcnt,sizeof(int)));
                                         ˜˜˜˜˜˜ ^˜˜˜˜˜
Cgl012cut.cpp:1622:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  v_cut->cval = reinterpret_cast<int *> (calloc(cnzcnt,sizeof(int)));
                                         ˜˜˜˜˜˜ ^˜˜˜˜˜
Cgl012cut.cpp:1671:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  ccoef = reinterpret_cast<int *> (calloc(inp_ilp->mc,sizeof(int)));
                                   ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1674:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  comb = reinterpret_cast<int *> (calloc(inp_ilp->mr,sizeof(int)));
                                  ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1676:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  flag_comb = reinterpret_cast<short int *> (calloc(inp_ilp->mr,sizeof(short int)));
                                             ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1832:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  (*cbeg) = reinterpret_cast<int *> (calloc((*cnum),sizeof(int)));
                                     ˜˜˜˜˜˜  ^˜˜˜˜
Cgl012cut.cpp:1835:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  (*ccnt) = reinterpret_cast<int *> (calloc((*cnum),sizeof(int)));
                                     ˜˜˜˜˜˜  ^˜˜˜˜
Cgl012cut.cpp:1838:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  (*crhs) = reinterpret_cast<int *> (calloc((*cnum),sizeof(int)));
                                     ˜˜˜˜˜˜  ^˜˜˜˜
Cgl012cut.cpp:1841:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  (*csense) = reinterpret_cast<char *> (calloc((*cnum),sizeof(char)));
                                        ˜˜˜˜˜˜  ^˜˜˜˜
Cgl012cut.cpp:1844:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  (*cind) = reinterpret_cast<int *> (calloc((*cnzcnt),sizeof(int)));
                                     ˜˜˜˜˜˜  ^˜˜˜˜˜˜
Cgl012cut.cpp:1847:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  (*cval) = reinterpret_cast<int *> (calloc((*cnzcnt),sizeof(int)));
                                     ˜˜˜˜˜˜  ^˜˜˜˜˜˜
Cgl012cut.cpp:1902:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  type_even_weak = reinterpret_cast<short int *> (calloc(p_ilp->mc,sizeof(short int)));
                                                  ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1904:67: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  switch_even_weak = reinterpret_cast<short int *> (calloc(p_ilp->mc,sizeof(short int)));
                                                    ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1906:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  type_odd_weak = reinterpret_cast<short int *> (calloc(p_ilp->mc,sizeof(short int)));
                                                 ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:1908:66: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  switch_odd_weak = reinterpret_cast<short int *> (calloc(p_ilp->mc,sizeof(short int)));
                                                   ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:2134:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            vars_to_weak = reinterpret_cast<int *> (calloc(inp_ilp->mc,sizeof(int)));
                                                    ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:2142:16: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
            ok_weak = best_weakening(n_to_weak,vars_to_weak,
                    ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Cgl012cut.cpp:2396:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cur_cut->coef = reinterpret_cast<int *> (calloc(n,sizeof(int)));
                                           ˜˜˜˜˜˜ ^
Cgl012cut.cpp:2398:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cur_cut->non_weak_coef = reinterpret_cast<int *> (calloc(n,sizeof(int)));
                                                    ˜˜˜˜˜˜ ^
Cgl012cut.cpp:2400:67: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cur_cut->in_constr_list = reinterpret_cast<short int *> (calloc(m,sizeof(short int)));
                                                           ˜˜˜˜˜˜ ^
Cgl012cut.cpp:2550:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  hash_el->flag_vect = reinterpret_cast<short int *> (calloc(m,sizeof(short int)));
                                                      ˜˜˜˜˜˜ ^
Cgl012cut.cpp:2689:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  new_coef = reinterpret_cast<int *> (calloc(inp_ilp->mtcnt[i],sizeof(int)));
                                      ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Cgl012cut.cpp:2763:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  ccoef = reinterpret_cast<int *> (calloc(n,sizeof(int)));
                                   ˜˜˜˜˜˜ ^
Cgl012cut.cpp:2863:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cut_ptr->cind = reinterpret_cast<int *> (calloc(nz,sizeof(int)));
                                           ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:2865:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cut_ptr->cval = reinterpret_cast<int *> (calloc(nz,sizeof(int)));
                                           ˜˜˜˜˜˜ ^˜
Cgl012cut.cpp:2880:67: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cut_ptr->constr_list = reinterpret_cast<int *> (calloc(inp_ilp->mr,sizeof(int)));
                                                  ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:2882:76: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  cut_ptr->in_constr_list = reinterpret_cast<short int *> (calloc(inp_ilp->mr,sizeof(short int)));
                                                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
Cgl012cut.cpp:2979:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  tight = reinterpret_cast<int *> (calloc(m,sizeof(int)));
                                   ˜˜˜˜˜˜ ^
Cgl012cut.cpp:3019:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  last_moved = reinterpret_cast<int *> (calloc(m,sizeof(int)));
                                        ˜˜˜˜˜˜ ^
Cgl012cut.cpp:3447:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      vlog = reinterpret_cast<log_var **> (calloc(p_ilp->mc,sizeof(log_var *)));
                                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜
In file included from Cgl012cut.cpp:9:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Cgl012cut.cpp:9:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
85 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglZeroHalfTest.lo CglZeroHalfTest.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I./.. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglZeroHalfTest.cpp  -fno-common -DPIC -o CglZeroHalfTest.o
In file included from CglZeroHalfTest.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglZeroHalfTest.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglZeroHalfTest.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
In file included from ./../CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglZeroHalfTest.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:10:
./../CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglZeroHalfTest.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglZeroHalfTest.cpp:12:
In file included from ./CglZeroHalf.hpp:10:
In file included from ./../CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglZeroHalf.la  -no-undefined -version-info 10:4:9 CglZeroHalf.lo Cgl012cut.lo CglZeroHalfTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglZeroHalf.a  CglZeroHalf.o Cgl012cut.o CglZeroHalfTest.o
ranlib .libs/libCglZeroHalf.a
creating libCglZeroHalf.la
(cd .libs && rm -f libCglZeroHalf.la && ln -s ../libCglZeroHalf.la libCglZeroHalf.la)
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglCutGenerator.lo CglCutGenerator.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglCutGenerator.cpp  -fno-common -DPIC -o CglCutGenerator.o
In file included from CglCutGenerator.cpp:12:
In file included from ./CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglCutGenerator.cpp:12:
In file included from ./CglCutGenerator.hpp:8:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglCutGenerator.cpp:12:
In file included from ./CglCutGenerator.hpp:10:
In file included from ./CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglCutGenerator.cpp:12:
In file included from ./CglCutGenerator.hpp:10:
./CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CglCutGenerator.cpp:12:
In file included from ./CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglCutGenerator.cpp:12:
In file included from ./CglCutGenerator.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
22 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglMessage.lo CglMessage.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglMessage.cpp  -fno-common -DPIC -o CglMessage.o
In file included from CglMessage.cpp:7:
In file included from ./CglMessage.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglStored.lo CglStored.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglStored.cpp  -fno-common -DPIC -o CglStored.o
In file included from CglStored.cpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglStored.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglStored.cpp:15:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCutDebugger.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglStored.cpp:17:
In file included from ./CglStored.hpp:11:
In file included from ./CglCutGenerator.hpp:10:
./CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglStored.cpp:310:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      fread(index,sizeof(int),n,fp);
      ˜˜˜˜˜                   ^
CglStored.cpp:311:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      fread(coefficient,sizeof(double),n,fp);
      ˜˜˜˜˜                            ^
CglStored.cpp:380:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(bestSolution_,bestSolution,numberColumns_*sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglStored.cpp:386:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(bounds_,lower,numberColumns_*sizeof(double));
                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglStored.cpp:387:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(bounds_+numberColumns_,upper,numberColumns_*sizeof(double));
                                      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglStored.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglStored.cpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglStored.cpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglStored.cpp:263:21: note: in instantiation of function template specialization 'CoinCopyOfArray<double>' requested here
    bestSolution_ = CoinCopyOfArray(source.bestSolution_,numberColumns_+1);
                    ^
28 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglParam.lo CglParam.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglParam.cpp  -fno-common -DPIC -o CglParam.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglTreeInfo.lo CglTreeInfo.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglTreeInfo.cpp  -fno-common -DPIC -o CglTreeInfo.o
In file included from CglTreeInfo.cpp:14:
In file included from ./CglTreeInfo.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCut.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CglTreeInfo.cpp:14:
In file included from ./CglTreeInfo.hpp:9:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CglTreeInfo.cpp:14:
In file included from ./CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CglTreeInfo.cpp:14:
./CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:137:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(fixEntry_,rhs.fixEntry_,maximumEntries_*sizeof(CliqueEntry));
                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:175:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(fixEntry_,rhs.fixEntry_,maximumEntries_*sizeof(CliqueEntry));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:452:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(entryC+nel,entry+cliqueStart[kClique],nn*sizeof(CliqueEntry));
                                                     ^˜˜
CglTreeInfo.cpp:465:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(entryC+nel,entry+cliqueStart[kClique],nn*sizeof(CliqueEntry));
                                                     ^˜˜
CglTreeInfo.cpp:656:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(entry+numberEntries,entries,numberExtraEntries*sizeof(CliqueEntry));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:895:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(mark,0,numberIntegers_);
  ˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1001:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(temp,entry,numberEntries*sizeof(CliqueEntry));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1005:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(tempI,whichClique,numberEntries*sizeof(int));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1012:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(temp,cliqueStart,(numberCliques+1)*sizeof(int));
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglTreeInfo.cpp:1016:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            memcpy(tempT,cliqueType,numberCliques);
            ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1090:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(temp,entry,numberEntries*sizeof(CliqueEntry));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1094:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(tempI,whichClique,numberEntries*sizeof(int));
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1101:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(temp,cliqueStart,(numberCliques+1)*sizeof(int));
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜ ˜
CglTreeInfo.cpp:1105:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            memcpy(tempT,cliqueType,numberCliques);
            ˜˜˜˜˜˜                  ^˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1237:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(temp1,fixEntry_,numberEntries_*sizeof(CliqueEntry));
                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1241:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(temp2,fixingEntry_,numberEntries_*sizeof(int));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1648:21: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            memset(fixed,0,numberIntegers_);
            ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CglTreeInfo.cpp:1683:21: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            memset(fixed,0,numberIntegers_);
            ˜˜˜˜˜˜         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CglTreeInfo.cpp:14:
In file included from ./CglTreeInfo.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CglTreeInfo.cpp:14:
In file included from ./CglTreeInfo.hpp:9:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
In file included from CglTreeInfo.cpp:14:
In file included from ./CglTreeInfo.hpp:11:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:187:29: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
        std::memcpy(arrayNew,array,size*sizeof(T));
                                   ^˜˜˜˜
CglTreeInfo.cpp:140:17: note: in instantiation of function template specialization 'CoinCopyOfArray<int>' requested here
      toZero_ = CoinCopyOfArray(rhs.toZero_,numberIntegers_+1);
                ^
41 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCgl.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 10:4:9 CglCutGenerator.lo CglMessage.lo CglStored.lo CglParam.lo CglTreeInfo.lo CglAllDifferent/libCglAllDifferent.la CglClique/libCglClique.la CglDuplicateRow/libCglDuplicateRow.la CglFlowCover/libCglFlowCover.la CglGMI/libCglGMI.la CglGomory/libCglGomory.la CglKnapsackCover/libCglKnapsackCover.la CglLandP/libCglLandP.la CglLiftAndProject/libCglLiftAndProject.la CglMixedIntegerRounding/libCglMixedIntegerRounding.la CglMixedIntegerRounding2/libCglMixedIntegerRounding2.la CglOddHole/libCglOddHole.la CglPreProcess/libCglPreProcess.la CglProbing/libCglProbing.la CglRedSplit/libCglRedSplit.la CglRedSplit2/libCglRedSplit2.la CglResidualCapacity/libCglResidualCapacity.la CglSimpleRounding/libCglSimpleRounding.la CglTwomir/libCglTwomir.la CglZeroHalf/libCglZeroHalf.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    
mkdir .libs
rm -fr .libs/libCgl.lax
mkdir .libs/libCgl.lax
rm -fr .libs/libCgl.lax/libCglAllDifferent.a
mkdir .libs/libCgl.lax/libCglAllDifferent.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/.libs/libCglAllDifferent.a
(cd .libs/libCgl.lax/libCglAllDifferent.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/.libs/libCglAllDifferent.a)
rm -fr .libs/libCgl.lax/libCglClique.a
mkdir .libs/libCgl.lax/libCglClique.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique/.libs/libCglClique.a
(cd .libs/libCgl.lax/libCglClique.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique/.libs/libCglClique.a)
rm -fr .libs/libCgl.lax/libCglDuplicateRow.a
mkdir .libs/libCgl.lax/libCglDuplicateRow.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/.libs/libCglDuplicateRow.a
(cd .libs/libCgl.lax/libCglDuplicateRow.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/.libs/libCglDuplicateRow.a)
rm -fr .libs/libCgl.lax/libCglFlowCover.a
mkdir .libs/libCgl.lax/libCglFlowCover.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/.libs/libCglFlowCover.a
(cd .libs/libCgl.lax/libCglFlowCover.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/.libs/libCglFlowCover.a)
rm -fr .libs/libCgl.lax/libCglGMI.a
mkdir .libs/libCgl.lax/libCglGMI.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI/.libs/libCglGMI.a
(cd .libs/libCgl.lax/libCglGMI.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI/.libs/libCglGMI.a)
rm -fr .libs/libCgl.lax/libCglGomory.a
mkdir .libs/libCgl.lax/libCglGomory.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory/.libs/libCglGomory.a
(cd .libs/libCgl.lax/libCglGomory.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory/.libs/libCglGomory.a)
rm -fr .libs/libCgl.lax/libCglKnapsackCover.a
mkdir .libs/libCgl.lax/libCglKnapsackCover.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/.libs/libCglKnapsackCover.a
(cd .libs/libCgl.lax/libCglKnapsackCover.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/.libs/libCglKnapsackCover.a)
rm -fr .libs/libCgl.lax/libCglLandP.a
mkdir .libs/libCgl.lax/libCglLandP.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/.libs/libCglLandP.a
(cd .libs/libCgl.lax/libCglLandP.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/.libs/libCglLandP.a)
rm -fr .libs/libCgl.lax/libCglLiftAndProject.a
mkdir .libs/libCgl.lax/libCglLiftAndProject.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/.libs/libCglLiftAndProject.a
(cd .libs/libCgl.lax/libCglLiftAndProject.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/.libs/libCglLiftAndProject.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/.libs/libCglMixedIntegerRounding.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/.libs/libCglMixedIntegerRounding.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding2.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding2.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/.libs/libCglMixedIntegerRounding2.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding2.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/.libs/libCglMixedIntegerRounding2.a)
rm -fr .libs/libCgl.lax/libCglOddHole.a
mkdir .libs/libCgl.lax/libCglOddHole.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole/.libs/libCglOddHole.a
(cd .libs/libCgl.lax/libCglOddHole.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole/.libs/libCglOddHole.a)
rm -fr .libs/libCgl.lax/libCglPreProcess.a
mkdir .libs/libCgl.lax/libCglPreProcess.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess/.libs/libCglPreProcess.a
(cd .libs/libCgl.lax/libCglPreProcess.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess/.libs/libCglPreProcess.a)
rm -fr .libs/libCgl.lax/libCglProbing.a
mkdir .libs/libCgl.lax/libCglProbing.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/.libs/libCglProbing.a
(cd .libs/libCgl.lax/libCglProbing.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/.libs/libCglProbing.a)
rm -fr .libs/libCgl.lax/libCglRedSplit.a
mkdir .libs/libCgl.lax/libCglRedSplit.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit/.libs/libCglRedSplit.a
(cd .libs/libCgl.lax/libCglRedSplit.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit/.libs/libCglRedSplit.a)
rm -fr .libs/libCgl.lax/libCglRedSplit2.a
mkdir .libs/libCgl.lax/libCglRedSplit2.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2/.libs/libCglRedSplit2.a
(cd .libs/libCgl.lax/libCglRedSplit2.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2/.libs/libCglRedSplit2.a)
rm -fr .libs/libCgl.lax/libCglResidualCapacity.a
mkdir .libs/libCgl.lax/libCglResidualCapacity.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity/.libs/libCglResidualCapacity.a
(cd .libs/libCgl.lax/libCglResidualCapacity.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity/.libs/libCglResidualCapacity.a)
rm -fr .libs/libCgl.lax/libCglSimpleRounding.a
mkdir .libs/libCgl.lax/libCglSimpleRounding.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding/.libs/libCglSimpleRounding.a
(cd .libs/libCgl.lax/libCglSimpleRounding.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding/.libs/libCglSimpleRounding.a)
rm -fr .libs/libCgl.lax/libCglTwomir.a
mkdir .libs/libCgl.lax/libCglTwomir.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/.libs/libCglTwomir.a
(cd .libs/libCgl.lax/libCglTwomir.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/.libs/libCglTwomir.a)
rm -fr .libs/libCgl.lax/libCglZeroHalf.a
mkdir .libs/libCgl.lax/libCglZeroHalf.a
Extracting /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf/.libs/libCglZeroHalf.a
(cd .libs/libCgl.lax/libCglZeroHalf.a && ar x /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf/.libs/libCglZeroHalf.a)
ar cru .libs/libCgl.a  CglCutGenerator.o CglMessage.o CglStored.o CglParam.o CglTreeInfo.o  .libs/libCgl.lax/libCglAllDifferent.a/CglAllDifferent.o  .libs/libCgl.lax/libCglClique.a/CglClique.o .libs/libCgl.lax/libCglClique.a/CglCliqueHelper.o .libs/libCgl.lax/libCglClique.a/CglCliqueTest.o  .libs/libCgl.lax/libCglDuplicateRow.a/CglDuplicateRow.o  .libs/libCgl.lax/libCglFlowCover.a/CglFlowCover.o .libs/libCgl.lax/libCglFlowCover.a/CglFlowCoverTest.o  .libs/libCgl.lax/libCglGMI.a/CglGMI.o .libs/libCgl.lax/libCglGMI.a/CglGMIParam.o  .libs/libCgl.lax/libCglGomory.a/CglGomory.o .libs/libCgl.lax/libCglGomory.a/CglGomoryTest.o  .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCover.o .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCoverTest.o  .libs/libCgl.lax/libCglLandP.a/CglLandP.o .libs/libCgl.lax/libCglLandP.a/CglLandPMessages.o .libs/libCgl.lax/libCglLandP.a/CglLandPSimplex.o .libs/libCgl.lax/libCglLandP.a/CglLandPTabRow.o .libs/libCgl.lax/libCglLandP.a/CglLandPTest.o .libs/libCgl.lax/libCglLandP.a/CglLandPUtils.o .libs/libCgl.lax/libCglLandP.a/CglLandPValidator.o  .libs/libCgl.lax/libCglLiftAndProject.a/CglLiftAndProject.o  .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRounding.o .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRoundingTest.o  .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2.o .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2Test.o  .libs/libCgl.lax/libCglOddHole.a/CglOddHole.o .libs/libCgl.lax/libCglOddHole.a/CglOddHoleTest.o  .libs/libCgl.lax/libCglPreProcess.a/CglPreProcess.o  .libs/libCgl.lax/libCglProbing.a/CglProbing.o .libs/libCgl.lax/libCglProbing.a/CglProbingTest.o  .libs/libCgl.lax/libCglRedSplit.a/CglRedSplit.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitParam.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitTest.o  .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Param.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Test.o  .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacity.o .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacityTest.o  .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRounding.o .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRoundingTest.o  .libs/libCgl.lax/libCglTwomir.a/CglTwomir.o .libs/libCgl.lax/libCglTwomir.a/CglTwomirTest.o  .libs/libCgl.lax/libCglZeroHalf.a/Cgl012cut.o .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalf.o .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalfTest.o 
ranlib .libs/libCgl.a
rm -fr .libs/libCgl.lax
creating libCgl.la
(cd .libs && rm -f libCgl.la && ln -s ../libCgl.la libCgl.la)
make[3]: Nothing to be done for `all-am'.
Making all in SYMPHONY
Making all in src
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master.lo `test -f 'Master/master.c' || echo './'`Master/master.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master.c  -fno-common -DPIC -o libSym_la-master.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master.c:1037:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
   if(env->obj_offset){
   ˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master.c:1092:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      tmp_sol = (double *) calloc(env->mip->n, DSIZE);
                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:1403:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(ISIZE * best_sol->xlength);
                                 ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master.c:1405:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (double *) malloc(DSIZE * best_sol->xlength);
                                    ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master.c:1407:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                best_sol->xind, ISIZE * best_sol->xlength);
                                      ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master.c:1409:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                best_sol->xval, DSIZE * best_sol->xlength);     
                                      ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master.c:1706:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               cru_vars = (char *)calloc(CSIZE,env->mip->n);
                                  ˜˜˜˜˜˜       ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:1714:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               cut_ind = (int *)malloc(ISIZE*ws_cnum);
                                            ˜^˜˜˜˜˜˜
Master/master.c:1715:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memset(cut_ind, -1, ISIZE*ws_cnum);
                                        ˜^˜˜˜˜˜˜
Master/master.c:1730:76: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               upd_cuts = (cut_data **)malloc(sizeof(cut_data *)*env->warm_start->allocated_cut_num);
                                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:1731:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               tmp_ind = (int *)malloc(ISIZE*ws_cnum);
                                            ˜^˜˜˜˜˜˜
Master/master.c:1874:74: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy((char *)env->mip->obj1, (char *)env->mip->obj, DSIZE*env->mip->n);
                                                              ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:1879:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                         env->rootdesc->uind.size*ISIZE);
                                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master.c:1972:63: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   indices = solutions[numsolutions].indices = (int *) calloc(length, ISIZE);
                                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
Master/master.c:1973:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   values = solutions[numsolutions].values = (double *) calloc(length, DSIZE);
                                                        ˜˜˜˜˜˜ ^˜˜˜˜˜
Master/master.c:1974:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy((char *) indices, env->best_sol.xind, length * ISIZE);
                                                ^˜˜˜˜˜ ˜
Master/master.c:1975:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy((char *) values, env->best_sol.xval, length * DSIZE);
                                               ^˜˜˜˜˜ ˜
Master/master.c:2053:63: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   indices = solutions[numsolutions].indices = (int *) calloc(length, ISIZE);
                                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
Master/master.c:2054:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   values = solutions[numsolutions].values = (double *) calloc(length, DSIZE);
                                                        ˜˜˜˜˜˜ ^˜˜˜˜˜
Master/master.c:2055:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy((char *) indices, env->best_sol.xind, length * ISIZE);
                                                ^˜˜˜˜˜ ˜
Master/master.c:2056:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy((char *) values, env->best_sol.xval, length * DSIZE);
                                               ^˜˜˜˜˜ ˜
Master/master.c:2398:63: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      indices = solutions[solution2].indices = (int *) calloc(length, ISIZE);
                                                       ˜˜˜˜˜˜ ^˜˜˜˜˜
Master/master.c:2399:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      values = solutions[solution2].values = (double *) calloc(length, DSIZE);
                                                        ˜˜˜˜˜˜ ^˜˜˜˜˜
Master/master.c:2400:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy((char *) indices, env->best_sol.xind, length * ISIZE);
                                                   ^˜˜˜˜˜ ˜
Master/master.c:2401:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy((char *) values, env->best_sol.xval, length * DSIZE);
                                                  ^˜˜˜˜˜ ˜
Master/master.c:2566:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (cut_pool **) malloc(env->par.tm_par.max_cp_num*sizeof(cut_pool *));
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master.c:2632:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->obj    = (double *) calloc(numcols, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2633:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->obj1   = (double *) calloc(numcols, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2634:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->obj2   = (double *) calloc(numcols, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2635:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->ub     = (double *) calloc(numcols, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2636:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->lb     = (double *) calloc(numcols, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2637:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->is_int = (char *)   calloc(CSIZE, numcols);
                                       ˜˜˜˜˜˜        ^˜˜˜˜˜˜
Master/master.c:2640:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->obj,  obj,  DSIZE * numcols);
                                               ˜ ^˜˜˜˜˜˜
Master/master.c:2644:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->obj2, obj2, DSIZE * numcols);
                                               ˜ ^˜˜˜˜˜˜
Master/master.c:2648:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->ub, colub, DSIZE * numcols); 
                                              ˜ ^˜˜˜˜˜˜
Master/master.c:2656:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->lb, collb, DSIZE * numcols);
                                              ˜ ^˜˜˜˜˜˜
Master/master.c:2660:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->is_int, is_int, CSIZE * numcols);
                                                   ˜ ^˜˜˜˜˜˜
Master/master.c:2666:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->rhs    = (double *) calloc(numrows, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2667:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         env->mip->sense  = (char *)   malloc(CSIZE * numrows);
                                                    ˜ ^˜˜˜˜˜˜
Master/master.c:2668:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->rngval = (double *) calloc(numrows, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2671:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->sense, rowsen, CSIZE * numrows); 
                                                  ˜ ^˜˜˜˜˜˜
Master/master.c:2673:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memset(env->mip->sense, 'N', CSIZE *numrows);
                                               ˜^˜˜˜˜˜˜
Master/master.c:2677:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->rhs, rowrhs, DSIZE * numrows);
                                                ˜ ^˜˜˜˜˜˜
Master/master.c:2681:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(env->mip->rngval, rowrng, DSIZE * numrows);
                                                   ˜ ^˜˜˜˜˜˜
Master/master.c:2690:53: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->matbeg = (int *) calloc(ISIZE, (numcols + 1));
                                    ˜˜˜˜˜˜         ˜˜˜˜˜˜˜˜^˜˜
Master/master.c:2691:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->matval = (double *) calloc(DSIZE,start[numcols]);
                                       ˜˜˜˜˜˜       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:2692:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->matind = (int *)    calloc(ISIZE,start[numcols]);
                                       ˜˜˜˜˜˜       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:2694:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(env->mip->matbeg, start, ISIZE *(numcols + 1));
                                               ˜ ˜˜˜˜˜˜˜˜^˜˜
Master/master.c:2695:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(env->mip->matval, value, DSIZE *start[numcols]);  
                                               ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:2696:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(env->mip->matind, index, ISIZE *start[numcols]);  
                                               ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:2704:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->obj    = (double *) calloc(numcols, DSIZE);   
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2707:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      env->mip->obj1   = (double *) calloc(numcols, DSIZE);
                                    ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2712:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->obj2   = (double *) calloc(numcols, DSIZE);   
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2718:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         env->mip->sense  = (char *) malloc(CSIZE * numrows);
                                                  ˜ ^˜˜˜˜˜˜
Master/master.c:2719:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(env->mip->sense, 'N', CSIZE *numrows);
                                            ˜^˜˜˜˜˜˜
Master/master.c:2725:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->rhs = (double *) calloc(numrows, DSIZE);      
                                    ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2731:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->rngval = (double *) calloc(numrows, DSIZE);
                                       ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2737:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->ub = (double *) calloc(numcols, DSIZE);
                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2746:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->lb = (double *) calloc(numcols, DSIZE);       
                                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master.c:2752:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         env->mip->is_int = (char *)   calloc(CSIZE, numcols);
                                       ˜˜˜˜˜˜        ^˜˜˜˜˜˜
Master/master.c:2963:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(collb, env->mip->lb, DSIZE * env->mip->n);
                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:2981:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(colub, env->mip->ub, DSIZE * env->mip->n);
                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:2999:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(rowsen, env->mip->sense, CSIZE * env->mip->m);
                                         ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3018:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(rowrhs, env->mip->rhs, DSIZE * env->mip->m);
                                       ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3040:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(matbeg, env->mip->matbeg, ISIZE * (env->mip->n + 1));
                                          ˜  ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Master/master.c:3041:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(matind, env->mip->matind, ISIZE * (*nz));
                                          ˜  ^˜˜
Master/master.c:3042:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(matval, env->mip->matval, DSIZE * (*nz));
                                          ˜  ^˜˜
Master/master.c:3060:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(rowrng, env->mip->rngval, DSIZE * env->mip->m);
                                          ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3180:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(obj, env->mip->obj, DSIZE*env->mip->n);
                                   ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3198:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(obj2, env->mip->obj2, DSIZE*env->mip->n);
                                     ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3321:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(colsol, env->mip->lb, DSIZE*env->mip->n);
                                           ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3329:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(colsol, 0, DSIZE*env->mip->n);
                             ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3381:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(colsol, 0, DSIZE*env->mip->n);
                             ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3415:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   colsol = (double *)malloc(DSIZE*env->mip->n);
                                  ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3426:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset(rowact, 0, DSIZE*env->mip->m);
                          ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3562:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      env->mip->obj1 = (double *) malloc(env->mip->n*DSIZE);
                                         ˜˜˜˜˜˜˜˜˜˜^˜
Master/master.c:3563:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(env->mip->obj1, env->mip->obj, DSIZE * env->mip->n); 
                                                  ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3564:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      env->mip->obj2 = (double *) calloc(env->mip->n, DSIZE);
                                  ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3956:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rowAct = (double*) calloc(env->mip->m, DSIZE);
                         ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:3997:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tmp_ind = (int*)malloc(ISIZE*env->mip->n);
                               ˜˜˜˜˜˜˜˜˜˜˜^
Master/master.c:4017:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      sol->xval = (double*)calloc(nz,DSIZE);
                           ˜˜˜˜˜˜ ^˜
Master/master.c:4018:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      sol->xind = (int*)malloc(ISIZE*nz);
                                    ˜^˜
Master/master.c:4019:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(sol->xind, tmp_ind, ISIZE*nz);
                                      ˜^˜
Master/master.c:4149:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   env->mip->colname = (char **)  calloc(sizeof(char *), env->mip->n);
                                  ˜˜˜˜˜˜                 ˜˜˜˜˜˜˜˜˜˜^
Master/master.c:4191:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         matBeg = (int*) calloc(ISIZE, n+1);
                         ˜˜˜˜˜˜        ˜^˜
Master/master.c:4210:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      env->rootdesc->uind.list = (int *) malloc(ISIZE*(*user_size));
                                                     ˜ ^˜˜˜˜˜˜˜˜˜
Master/master.c:4211:72: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(env->rootdesc->uind.list, user_indices, ISIZE*(*user_size - 1));
                                                          ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜
Master/master.c:4214:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      colLb = (double*) malloc(DSIZE*(n+1));
                                    ˜ ˜^˜
Master/master.c:4215:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      colUb = (double*) malloc(DSIZE*(n+1));
                                    ˜ ˜^˜
Master/master.c:4216:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      objN = (double*) malloc(DSIZE*(n+1));
                                   ˜ ˜^˜
Master/master.c:4218:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         obj1N = (double*) calloc(DSIZE, (n+1));
                           ˜˜˜˜˜˜         ˜^˜
Master/master.c:4221:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         obj2N = (double*) calloc(DSIZE, (n+1));
                           ˜˜˜˜˜˜         ˜^˜
Master/master.c:4223:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      isInt = (char*) calloc(CSIZE, (n+1));
                      ˜˜˜˜˜˜         ˜^˜
Master/master.c:4226:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(colLb, env->mip->lb, DSIZE*n);
                                          ˜^
Master/master.c:4227:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(colUb, env->mip->ub, DSIZE*n);
                                          ˜^
Master/master.c:4228:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(objN, env->mip->obj, DSIZE*n);
                                          ˜^
Master/master.c:4230:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(obj1N, env->mip->obj1, DSIZE*n);
                                               ˜^
Master/master.c:4233:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(obj2N, env->mip->obj2, DSIZE*n);
                                               ˜^
Master/master.c:4235:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(isInt, env->mip->is_int, CSIZE*n);
                                              ˜^
Master/master.c:4238:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      matBeg = (int*) calloc(ISIZE,(n+2));
                      ˜˜˜˜˜˜        ˜^˜
Master/master.c:4250:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         matInd = (int*) malloc(ISIZE*(nz+numelems));
                                     ˜ ˜˜^˜˜˜˜˜˜˜˜
Master/master.c:4251:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         matVal = (double*) malloc(DSIZE*(nz+numelems));
                                        ˜ ˜˜^˜˜˜˜˜˜˜˜
Master/master.c:4254:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(matInd, env->mip->matind, ISIZE*nz);
                                                  ˜^˜
Master/master.c:4255:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(matVal, env->mip->matval, DSIZE*nz);
                                                  ˜^˜
Master/master.c:4258:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(matInd + nz, indices, ISIZE*numelems);
                                           ˜^˜˜˜˜˜˜˜
Master/master.c:4259:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(matVal + nz, elements, DSIZE*numelems); 
                                            ˜^˜˜˜˜˜˜˜
Master/master.c:4268:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(matBeg, env->mip->matbeg, ISIZE*(n+1));
                                               ˜ ˜^˜
Master/master.c:4307:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         colName = (char**) calloc(sizeof(char*),(n+1));
                            ˜˜˜˜˜˜                ˜^˜
Master/master.c:4382:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         matBeg = (int *) calloc(ISIZE, n+1);
                          ˜˜˜˜˜˜        ˜^˜
Master/master.c:4383:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         matInd = (int *)calloc(ISIZE, numelems);
                         ˜˜˜˜˜˜        ^˜˜˜˜˜˜˜
Master/master.c:4425:28: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         matBeg = (int*) calloc (n+1, ISIZE);
                         ˜˜˜˜˜˜  ˜^˜
Master/master.c:4426:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         matInd = (int*) malloc(ISIZE*(nz+numelems));
                                     ˜ ˜˜^˜˜˜˜˜˜˜˜
Master/master.c:4427:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         matVal = (double*) malloc(DSIZE*(nz+numelems));  
                                        ˜ ˜˜^˜˜˜˜˜˜˜˜
Master/master.c:4428:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         lengths = (int*) calloc (ISIZE,n);
                          ˜˜˜˜˜˜        ^
Master/master.c:4445:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      ISIZE * (env->mip->matbeg[i+1]-env->mip->matbeg[i])); 
                            ˜  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4448:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      DSIZE * (env->mip->matbeg[i+1]-env->mip->matbeg[i])); 
                            ˜  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4475:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      sense = (char*) malloc(CSIZE*(m+1));
                                  ˜ ˜^˜
Master/master.c:4476:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rhs = (double*) malloc(DSIZE*(m+1));
                                  ˜ ˜^˜
Master/master.c:4477:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      range = (double*) malloc(DSIZE*(m+1));
                                    ˜ ˜^˜
Master/master.c:4480:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(sense, env->mip->sense, CSIZE*m);
                                             ˜^
Master/master.c:4481:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(range, env->mip->rngval, DSIZE*m);
                                              ˜^
Master/master.c:4482:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(rhs, env->mip->rhs, DSIZE*m);
                                         ˜^
Master/master.c:4591:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      env->base->userind = (int *) realloc (bvar_ind, ISIZE * bind);
                                                            ˜ ^˜˜˜
Master/master.c:4595:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      env->rootdesc->uind.list = (int *) realloc (user_ind, ISIZE * uind);
                                                                  ˜ ^˜˜˜
Master/master.c:4601:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   lengths = (int*) malloc (ISIZE*n);
                                 ˜^
Master/master.c:4638:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memmove(matInd + matBeg[k], matInd + matBeg[i], ISIZE * lengths[i]); 
                                                            ˜ ^˜˜˜˜˜˜˜˜˜
Master/master.c:4639:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memmove(matVal + matBeg[k], matVal + matBeg[i], DSIZE * lengths[i]); 
                                                            ˜ ^˜˜˜˜˜˜˜˜˜
Master/master.c:4650:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memmove(matInd + matBeg[k], matInd + matBeg[i], ISIZE * lengths[i]); 
                                                            ˜ ^˜˜˜˜˜˜˜˜˜
Master/master.c:4651:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memmove(matVal + matBeg[k], matVal + matBeg[i], DSIZE * lengths[i]); 
                                                            ˜ ^˜˜˜˜˜˜˜˜˜
Master/master.c:4691:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->matbeg = (int *) realloc(matBeg, (n+1)*ISIZE);
                                               ˜^˜ ˜
Master/master.c:4692:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->matind = (int *) realloc(matInd, nz*ISIZE);
                                              ^˜˜
Master/master.c:4693:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->matval = (double *) realloc(matVal, nz*DSIZE);
                                                 ^˜˜
Master/master.c:4694:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->lb = (double *) realloc(colLb, n*DSIZE);
                                            ^˜
Master/master.c:4695:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->ub = (double *) realloc(colUb, n*DSIZE);
                                            ^˜
Master/master.c:4696:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->obj = (double *) realloc(objN, n*DSIZE);
                                            ^˜
Master/master.c:4697:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->is_int = (char *) realloc(isInt, n*CSIZE);
                                              ^˜
Master/master.c:4698:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->colname = (char **) realloc(colName, n*sizeof(char *));
                                                  ^˜
Master/master.c:4753:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_rows = (int *) malloc(m*ISIZE);
                             ^˜
Master/master.c:4802:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->rhs    = (double *) realloc(rhs, DSIZE * new_num_rows);
                                                    ˜ ^˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4803:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->sense  = (char *)   realloc(sense, CSIZE * new_num_rows);
                                                      ˜ ^˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4804:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->rngval = (double *) realloc(range, DSIZE * new_num_rows);
                                                      ˜ ^˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4806:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->matval = (double *) realloc(matVal, DSIZE*new_num_elements);
                                                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4807:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   env->mip->matind = (int *)    realloc(matInd, ISIZE*new_num_elements);
                                                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master.c:4961:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         ws->cuts = (cut_data **)malloc(temp *sizeof(cut_data *));
                                        ^˜˜˜ ˜
Master/master.c:4966:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            cut->coef = (char*)malloc(CSIZE*cut->size);
                                           ˜˜˜˜˜˜^˜˜˜
Master/master.c:6564:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  double *obj_val = (double *)calloc(DSIZE,file_num);
                              ˜˜˜˜˜˜       ^˜˜˜˜˜˜˜
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/master.c:37:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
183 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master_wrapper.lo `test -f 'Master/master_wrapper.c' || echo './'`Master/master_wrapper.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master_wrapper.c  -fno-common -DPIC -o libSym_la-master_wrapper.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_wrapper.c:366:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         root->uind.list = (int *) malloc(root->uind.size * ISIZE);
                                          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_wrapper.c:420:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      env->best_sol.xind = (int *) malloc(env->best_sol.xlength * ISIZE);
                                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜ ˜
Master/master_wrapper.c:421:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      env->best_sol.xval = (double *) malloc(env->best_sol.xlength * DSIZE);
                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜ ˜
Master/master_wrapper.c:461:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tm->lpp = (lp_prob **) malloc(tm->par.max_active_nodes * sizeof(lp_prob *));
                                 ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_wrapper.c:572:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tm->cgp = (cg_prob **) malloc(tm->par.max_active_nodes*sizeof(cg_prob *));
                                 ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_wrapper.c:611:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tm->cpp = (cut_pool **) malloc(env->par.tm_par.max_cp_num*sizeof(cut_pool *));
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_wrapper.c:787:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
   if (tmp = env->mip){
       ˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_wrapper.c:787:12: note: place parentheses around the assignment to silence this warning
   if (tmp = env->mip){
           ^
       (             )
Master/master_wrapper.c:787:12: note: use '==' to turn this assignment into an equality comparison
   if (tmp = env->mip){
           ^
           ==
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/master_wrapper.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
44 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master_io.lo `test -f 'Master/master_io.c' || echo './'`Master/master_io.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master_io.c  -fno-common -DPIC -o libSym_la-master_io.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_io.c:149:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               (tm_par->lp_mach_num * (MACH_NAME_LENGTH + 1));
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_io.c:151:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (char **) malloc(tm_par->lp_mach_num * sizeof(char *));
                                ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_io.c:174:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               (tm_par->cg_mach_num * (MACH_NAME_LENGTH + 1));
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_io.c:176:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (char **) malloc(tm_par->cg_mach_num * sizeof(char *));
                                ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_io.c:199:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               (tm_par->cp_mach_num * (MACH_NAME_LENGTH + 1));
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_io.c:201:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (char **) malloc(tm_par->cp_mach_num * sizeof(char *));
                                ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_io.c:790:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      strncpy(target, quote1, len);
      ˜˜˜˜˜˜˜                 ^˜˜
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/master_io.c:25:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
44 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master_func.lo `test -f 'Master/master_func.c' || echo './'`Master/master_func.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master_func.c  -fno-common -DPIC -o libSym_la-master_func.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_func.c:62:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   path = (bc_node **) malloc((2*(level+1)+BB_BUNCH)*sizeof(bc_node *));
                               ˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:154:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      extravar.list = (int *) malloc(extravar.size*ISIZE);
                                     ˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:156:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         basis.extravars.stat = (int *) malloc(extravar.size*ISIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:159:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      extrarow.list = (int *) malloc(extrarow.size*ISIZE);
                                     ˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:161:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         basis.extrarows.stat = (int *) malloc(extrarow.size*ISIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:164:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      not_fixed.list = (int *) malloc(not_fixed.size*ISIZE);
                                      ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:166:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      basis.basevars.stat = (int *) malloc(env->base->varnum*ISIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:168:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      basis.baserows.stat = (int *) malloc(env->base->cutnum*ISIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:174:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(extravar.list, n->desc.uind.list, ISIZE * extravar.size);
                                                        ˜ ˜˜˜˜˜˜˜˜˜^˜˜˜
Master/master_func.c:183:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   path[ev_ind]->desc.basis.extravars.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:202:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   basis.basevars.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:218:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(extrarow.list, n->desc.cutind.list, ISIZE * extrarow.size);
                                                          ˜ ˜˜˜˜˜˜˜˜˜^˜˜˜
Master/master_func.c:226:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   path[er_ind]->desc.basis.extrarows.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:244:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   basis.baserows.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:259:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(not_fixed.list, n->desc.not_fixed.list, ISIZE*not_fixed.size);
                                                             ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
Master/master_func.c:287:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memcpy((char *)new_desc->desc, (char *)desc->desc, new_desc->desc_size);
      ˜˜˜˜˜˜                                             ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
Master/master_func.c:308:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      ((2*(level+1)+BB_BUNCH)*sizeof(branch_desc));
        ˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:357:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      sense  = (char*) malloc(size*CSIZE);
                              ^˜˜˜˜
Master/master_func.c:358:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rhs = (double*) malloc(size*DSIZE);
                             ^˜˜˜˜
Master/master_func.c:359:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      matbeg = (int *) calloc(size + 1, ISIZE);
                       ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜
Master/master_func.c:374:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      matind = (int *) malloc(nzcnt*ISIZE);
                              ^˜˜˜˜˜
Master/master_func.c:375:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      matval = (double *) malloc(nzcnt*DSIZE);
                                 ^˜˜˜˜˜
Master/master_func.c:383:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      ISIZE * nzcnt);
                            ˜ ^˜˜˜˜
Master/master_func.c:385:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      (double *) (cut->coef + (1 + nzcnt) * ISIZE), 
                                               ˜˜^˜˜˜˜˜˜  ˜
Master/master_func.c:386:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      DSIZE * nzcnt);
                            ˜ ^˜˜˜˜
Master/master_func.c:407:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.basevars.stat, desc->basis.basevars.size *ISIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:409:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.extravars.stat, desc->basis.extravars.size *ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:418:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.baserows.stat, desc->basis.baserows.size *ISIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:420:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.extrarows.stat, desc->basis.extrarows.size *ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
Master/master_func.c:435:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      lp_data->x = (double *)malloc(DSIZE*lp_data->n);
                                         ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:464:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            xind = (int *)malloc(ISIZE*lp_data->n);
                                      ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:465:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            xval = (double *)malloc(DSIZE*lp_data->n);      
                                         ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:473:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            best_sol->xind = (int *)malloc(ISIZE*cnt);
                                                ˜^˜˜
Master/master_func.c:474:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            best_sol->xval = (double *)malloc(DSIZE*cnt);           
                                                   ˜^˜˜
Master/master_func.c:475:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(best_sol->xind, xind, ISIZE*cnt);
                                              ˜^˜˜
Master/master_func.c:476:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(best_sol->xval, xval, DSIZE*cnt);    
                                              ˜^˜˜
Master/master_func.c:485:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   for(i = 0; i < 2*(level+1)+BB_BUNCH; i++){
                  ˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:696:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                              (tmp_size + added_colnum) * ISIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜  ˜
Master/master_func.c:717:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                             (tmp_size + added_colnum) *ISIZE);  
                              ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜  ˜
Master/master_func.c:1056:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         colsol = (double*)calloc(env->mip->n, DSIZE);
                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:1057:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         rowact = (double*) calloc(env->mip->m, DSIZE);
                            ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:1119:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         colsol = (double*)calloc(env->mip->n, DSIZE);
                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:1208:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         n_to->sol = (double *)malloc(n_from->sol_size*DSIZE);
                                      ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
Master/master_func.c:1209:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         n_to->sol_ind = (int *)malloc(n_from->sol_size*ISIZE);
                                       ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
Master/master_func.c:1210:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(n_to->sol, n_from->sol, n_from->sol_size * DSIZE);
                                        ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜ ˜
Master/master_func.c:1211:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(n_to->sol_ind, n_from->sol_ind, n_from->sol_size * ISIZE);
                                                ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜ ˜
Master/master_func.c:1265:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          n_to->bobj.child_num*CSIZE); 
          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1267:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          n_to->bobj.child_num*DSIZE); 
          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1269:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          n_to->bobj.child_num*DSIZE); 
          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1271:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          n_to->bobj.child_num*ISIZE);     
          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1288:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      n_to->desc.uind.list = (int *) malloc(n_to->desc.uind.size*ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1290:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              n_to->desc.uind.size*ISIZE);
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1295:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(n_to->desc.basis.basevars.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1298:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 n_to->desc.basis.basevars.size*ISIZE);   
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1301:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(n_to->desc.basis.basevars.size*ISIZE);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1304:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    n_to->desc.basis.basevars.size*ISIZE);                       
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1310:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(n_to->desc.basis.extravars.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1313:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 n_to->desc.basis.extravars.size*ISIZE);          
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1316:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(n_to->desc.basis.extravars.size*ISIZE);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1319:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    n_to->desc.basis.extravars.size*ISIZE);             
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1325:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(n_to->desc.basis.baserows.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1328:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 n_to->desc.basis.baserows.size*ISIZE);   
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1331:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(n_to->desc.basis.baserows.size*ISIZE);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1334:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    n_to->desc.basis.baserows.size*ISIZE);        
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1340:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(n_to->desc.basis.extrarows.size*ISIZE);   
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1343:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 n_to->desc.basis.extrarows.size*ISIZE);          
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1346:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(n_to->desc.basis.extrarows.size*ISIZE);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1349:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    n_to->desc.basis.extrarows.size*ISIZE);       
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1355:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (int *) malloc(n_to->desc.not_fixed.size*ISIZE);        
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1357:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              n_to->desc.not_fixed.size*ISIZE);
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1361:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      n_to->desc.cutind.list = (int *) malloc(n_to->desc.cutind.size*ISIZE);
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1363:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              n_to->desc.cutind.size*ISIZE);   
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1367:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      n_to->desc.desc = (char*) malloc(n_to->desc.desc_size*CSIZE);
                                       ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1369:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             n_to->desc.desc_size*CSIZE);   
             ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1377:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (ISIZE *n_from->desc.bnd_change->num_changes);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:1379:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (CSIZE *n_from->desc.bnd_change->num_changes);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:1381:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (DSIZE *n_from->desc.bnd_change->num_changes);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:1384:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 ISIZE *n_from->desc.bnd_change->num_changes);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:1387:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 CSIZE *n_from->desc.bnd_change->num_changes);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:1390:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 DSIZE *n_from->desc.bnd_change->num_changes);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:1416:61: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         root_to->children = (bc_node **) calloc(sizeof(bc_node*), childNum);
                                          ˜˜˜˜˜˜                   ^˜˜˜˜˜˜˜
Master/master_func.c:1643:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      node->desc.uind.list = (int *) malloc(node->desc.uind.size*ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1655:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (int *) malloc(node->desc.not_fixed.size*ISIZE);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1665:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      node->desc.cutind.list = (int *) malloc(node->desc.cutind.size*ISIZE);
                                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1676:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (int *) malloc(node->desc.basis.basevars.size*ISIZE);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1679:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.basevars.size*ISIZE);   
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1695:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (int *) malloc(node->desc.basis.extravars.size*ISIZE);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1698:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.extravars.size*ISIZE);   
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1713:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (int *) malloc(node->desc.basis.baserows.size*ISIZE);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1716:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.baserows.size*ISIZE);   
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1730:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (int *) malloc(node->desc.basis.extrarows.size*ISIZE);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1733:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.extrarows.size*ISIZE);   
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:1746:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (char *) malloc(node->desc.desc_size*CSIZE);   
                         ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:1771:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      root->children = (bc_node **) malloc(sizeof(bc_node*)*childNum);
                                                           ˜^˜˜˜˜˜˜˜
Master/master_func.c:3443:14: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      calloc(allocated_cut_num, sizeof(cut_data*)); 
      ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3448:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         (char*)calloc(ws_copy->cuts[i]->size,CSIZE);
                ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
Master/master_func.c:3450:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             CSIZE* ws_copy->cuts[i]->size);
                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
Master/master_func.c:3457:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      ws_copy->best_sol.xind = (int*) malloc (ISIZE * ws->best_sol.xlength);
                                                    ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3458:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      ws_copy->best_sol.xval = (double*) malloc (DSIZE * ws->best_sol.xlength);
                                                       ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3461:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             ISIZE * ws->best_sol.xlength);   
                   ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3463:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             DSIZE * ws->best_sol.xlength);   
                   ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3482:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->obj       = (double *) malloc(DSIZE * mip_copy->n);
                                                       ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3484:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->ub        = (double *) malloc(DSIZE * mip_copy->n);
                                                       ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3485:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->lb        = (double *) malloc(DSIZE * mip_copy->n);
                                                       ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3486:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->is_int    = (char *)   malloc(CSIZE * mip_copy->n);
                                                       ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3487:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->matbeg    = (int *)    malloc(ISIZE * (mip_copy->n + 1));
                                                       ˜  ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Master/master_func.c:3489:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->obj,    mip->obj,    DSIZE * mip_copy->n); 
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3490:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->ub,     mip->ub,     DSIZE * mip_copy->n); 
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3491:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->lb,     mip->lb,     DSIZE * mip_copy->n);    
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3492:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->is_int, mip->is_int, CSIZE * mip_copy->n);    
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3493:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->matbeg, mip->matbeg, ISIZE * (mip_copy->n + 1));
                                                     ˜  ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Master/master_func.c:3496:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            mip_copy->obj1      = (double *) malloc(DSIZE * mip_copy->n);
                                                          ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3497:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip_copy->obj1,   mip->obj1,   DSIZE * mip_copy->n); 
                                                        ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3500:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            mip_copy->obj2      = (double *) malloc(DSIZE * mip_copy->n);
                                                          ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3501:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip_copy->obj2,   mip->obj2,   DSIZE * mip_copy->n); 
                                                        ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3506:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->rhs    = (double *) malloc(DSIZE * mip_copy->m);
                                                    ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3507:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->sense  = (char *)   malloc(CSIZE * mip_copy->m);
                                                    ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3508:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->rngval = (double *) malloc(DSIZE * mip_copy->m);
                                                    ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3510:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->rhs, mip->rhs,       DSIZE * mip_copy->m); 
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3511:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->sense, mip->sense,   CSIZE * mip_copy->m); 
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3512:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->rngval, mip->rngval, DSIZE * mip_copy->m);
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3516:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->matval     = (double *) malloc(DSIZE*mip_copy->nz);
                                                       ˜˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3517:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->matind     = (int *)    malloc(ISIZE*mip_copy->nz);
                                                       ˜˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3518:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->matval, mip->matval, DSIZE * mip_copy->nz);  
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3519:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->matind, mip->matind, ISIZE * mip_copy->nz);  
                                                     ˜ ˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3529:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->row_matbeg  = (int *) malloc(ISIZE * (mip_copy->m + 1));
                                                      ˜  ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Master/master_func.c:3530:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->row_matind = (int *)    malloc(ISIZE*mip_copy->nz);
                                                       ˜˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3531:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->row_matval = (double *) malloc(DSIZE*mip_copy->nz);
                                                       ˜˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3532:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->row_lengths = (int *) malloc(ISIZE * mip_copy->m);
                                                      ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3533:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_copy->col_lengths    = (int *)    malloc(ISIZE * mip_copy->n);
                                                            ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3536:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                ISIZE*(mip_copy->m + 1));
                     ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
Master/master_func.c:3537:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->row_matind, mip->row_matind, ISIZE*mip_copy->nz);
                                                            ˜˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3538:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->row_matval, mip->row_matval, DSIZE*mip_copy->nz);
                                                            ˜˜˜˜˜˜˜˜˜˜˜^˜
Master/master_func.c:3539:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->row_lengths, mip->row_lengths, ISIZE*mip_copy->m);
                                                              ˜˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3540:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->col_lengths, mip->col_lengths, ISIZE * mip_copy->n);
                                                               ˜ ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3544:63: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip_copy->colname = (char**)calloc(sizeof(char*), mip_copy->n);
                                     ˜˜˜˜˜˜                ˜˜˜˜˜˜˜˜˜˜^
Master/master_func.c:3557:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->fixed_ind, mip->fixed_ind, ISIZE*mip->fixed_n);
                                                          ˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3558:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip_copy->fixed_val, mip->fixed_val, DSIZE*mip->fixed_n);
                                                          ˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3612:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (char**)malloc(sizeof(char*)*par->tm_par.lp_mach_num);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3615:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (char**)malloc(sizeof(char*)*par->tm_par.cg_mach_num);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3618:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (char**)malloc(sizeof(char*)*par->tm_par.cp_mach_num);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3647:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      sol->xind = (int *)malloc(ISIZE * sol->xlength);
                                      ˜ ˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3648:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      sol->xval = (double *)malloc(DSIZE * sol->xlength);
                                         ˜ ˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3649:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(sol->xind, env->best_sol.xind, ISIZE*sol->xlength);
                                                 ˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3650:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(sol->xval, env->best_sol.xval, DSIZE*sol->xlength);
                                                 ˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3661:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         (sp_solution **) calloc (sp->max_solutions, sizeof(sp_solution *));
                          ˜˜˜˜˜˜  ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3667:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *)malloc(ISIZE * sp->solutions[i]->xlength);
                                   ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3669:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (double *)malloc(DSIZE * sp->solutions[i]->xlength);
                                      ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3671:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   ISIZE*sp->solutions[i]->xlength);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3673:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   DSIZE*sp->solutions[i]->xlength);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
Master/master_func.c:3706:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         env_copy->base->userind = (int *) malloc(ISIZE*env->base->varnum);
                                                       ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
Master/master_func.c:3708:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                ISIZE*env->base->varnum);
                     ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
Master/master_func.c:3722:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         desc->uind.list = (int *) malloc(desc->uind.size*ISIZE);
                                          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3724:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 desc->uind.size*ISIZE);
                 ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3729:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(desc->not_fixed.size*ISIZE);  
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3731:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 desc->not_fixed.size*ISIZE);
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3735:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         desc->cutind.list = (int *) malloc(desc->cutind.size*ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3737:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 desc->cutind.size*ISIZE);   
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3741:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         desc->desc = (char*) malloc(desc->desc_size*CSIZE);
                                     ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:3743:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->desc_size*CSIZE);   
                ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
Master/master_func.c:3751:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (ISIZE *env->rootdesc->bnd_change->num_changes);
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3753:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (CSIZE *env->rootdesc->bnd_change->num_changes);
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3755:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (DSIZE *env->rootdesc->bnd_change->num_changes);
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3758:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   ISIZE *env->rootdesc->bnd_change->num_changes);
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3761:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   CSIZE *env->rootdesc->bnd_change->num_changes);
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3764:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   DSIZE *env->rootdesc->bnd_change->num_changes);
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3788:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (cut_pool **) malloc(env_copy->par.tm_par.max_cp_num*
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3808:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (cp_cut_data**)malloc(env_copy->cp[i]->allocated_cut_num*
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3815:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               cp_cut->cut.coef = (char*)malloc(cp_cut->cut.size*CSIZE);
                                                ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3817:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      cp_cut->cut.size*CSIZE);
                      ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3822:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         sol->xind = (int *)malloc(ISIZE * sol->max_sol_length);
                                         ˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3823:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         sol->xval = (double *)malloc(DSIZE * sol->max_sol_length);
                                            ˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3824:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(sol->xind, env->cp[i]->cur_sol.xind, ISIZE*sol->max_sol_length);
                                                          ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3825:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(sol->xval, env->cp[i]->cur_sol.xval, DSIZE*sol->max_sol_length);
                                                          ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_func.c:3830:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (cut_data**)malloc(num * sizeof(cut_data*));
                                  ^˜˜ ˜
Master/master_func.c:3836:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               cut->coef = (char*)malloc(cut->size*CSIZE);
                                         ˜˜˜˜˜^˜˜˜˜
Master/master_func.c:3838:14: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      cut->size*CSIZE);
                      ˜˜˜˜˜^˜˜˜˜
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/master_func.c:27:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
214 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master_prep.lo `test -f 'Master/master_prep.c' || echo './'`Master/master_prep.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master_prep.c  -fno-common -DPIC -o libSym_la-master_prep.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_prep.c:176:59: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   P->stats.nz_coeff_changed = (char *)calloc(CSIZE ,mip->nz);
                                       ˜˜˜˜˜˜        ˜˜˜˜˜^˜
Master/master_prep.c:178:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   P->tmpi = (int *)malloc(ISIZE*max_mn);
                                ˜^˜˜˜˜˜
Master/master_prep.c:179:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   P->tmpd = (double *)malloc(DSIZE*max_mn);
                                   ˜^˜˜˜˜˜
Master/master_prep.c:180:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   P->tmpc = (char *)malloc(CSIZE*max_mn);
                                 ˜^˜˜˜˜˜
Master/master_prep.c:249:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->obj    = (double *) calloc(numcols, DSIZE);
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:250:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->ub     = (double *) calloc(numcols, DSIZE);
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:251:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->lb     = (double *) calloc(numcols, DSIZE);
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:252:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->is_int = (char *)   calloc(CSIZE, numcols);
                                  ˜˜˜˜˜˜        ^˜˜˜˜˜˜
Master/master_prep.c:255:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->obj,  obj,  DSIZE * numcols);
                                          ˜ ^˜˜˜˜˜˜
Master/master_prep.c:259:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->ub, colub, DSIZE * numcols); 
                                         ˜ ^˜˜˜˜˜˜
Master/master_prep.c:267:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->lb, collb, DSIZE * numcols);
                                         ˜ ^˜˜˜˜˜˜
Master/master_prep.c:271:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->is_int, is_int, CSIZE * numcols);
                                              ˜ ^˜˜˜˜˜˜
Master/master_prep.c:277:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->rhs    = (double *) calloc(numrows, DSIZE);
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:278:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip->sense  = (char *)   malloc(CSIZE * numrows);
                                               ˜ ^˜˜˜˜˜˜
Master/master_prep.c:279:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->rngval = (double *) calloc(numrows, DSIZE);
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:282:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->sense, rowsen, CSIZE * numrows); 
                                             ˜ ^˜˜˜˜˜˜
Master/master_prep.c:284:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memset(mip->sense, 'N', CSIZE *numrows);
                                          ˜^˜˜˜˜˜˜
Master/master_prep.c:288:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->rhs, rowrhs, DSIZE * numrows);
                                           ˜ ^˜˜˜˜˜˜
Master/master_prep.c:292:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(mip->rngval, rowrng, DSIZE * numrows);
                                              ˜ ^˜˜˜˜˜˜
Master/master_prep.c:301:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->matbeg = (int *) calloc(ISIZE, (numcols + 1));
                               ˜˜˜˜˜˜         ˜˜˜˜˜˜˜˜^˜˜
Master/master_prep.c:302:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->matval = (double *) calloc(DSIZE,start[numcols]);
                                  ˜˜˜˜˜˜       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep.c:303:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->matind = (int *)    calloc(ISIZE,start[numcols]);
                                  ˜˜˜˜˜˜       ^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep.c:305:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip->matbeg, start, ISIZE *(numcols + 1));
                                          ˜ ˜˜˜˜˜˜˜˜^˜˜
Master/master_prep.c:306:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip->matval, value, DSIZE *start[numcols]);  
                                          ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep.c:307:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(mip->matind, index, ISIZE *start[numcols]);  
                                          ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep.c:315:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->obj    = (double *) calloc(numcols, DSIZE);        
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:321:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip->sense  = (char *) malloc(CSIZE * numrows);
                                             ˜ ^˜˜˜˜˜˜
Master/master_prep.c:322:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(mip->sense, 'N', CSIZE *numrows);
                                       ˜^˜˜˜˜˜˜
Master/master_prep.c:328:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->rhs = (double *) calloc(numrows, DSIZE);   
                               ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:334:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->rngval = (double *) calloc(numrows, DSIZE);
                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:340:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->ub = (double *) calloc(numcols, DSIZE);
                              ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:349:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->lb = (double *) calloc(numcols, DSIZE);    
                              ˜˜˜˜˜˜ ^˜˜˜˜˜˜
Master/master_prep.c:355:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         mip->is_int = (char *)   calloc(CSIZE, numcols);
                                  ˜˜˜˜˜˜        ^˜˜˜˜˜˜
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/master_prep.c:22:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
70 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master_prep_base.lo `test -f 'Master/master_prep_base.c' || echo './'`Master/master_prep_base.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master_prep_base.c  -fno-common -DPIC -o libSym_la-master_prep_base.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_prep_base.c:158:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            P->impl_rows = (ROWinfo *)malloc(sizeof(ROWinfo)*m); 
                                                            ˜^
Master/master_prep_base.c:159:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            P->impl_cols = (COLinfo *)malloc(sizeof(COLinfo)*n); 
                                                            ˜^
Master/master_prep_base.c:160:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            P->impl_ub = (double *) malloc(DSIZE*n);
                                                ˜^
Master/master_prep_base.c:161:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            P->impl_lb = (double *) malloc(DSIZE*n);
                                                ˜^
Master/master_prep_base.c:163:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            P->ulist_checked = (char *)malloc(CSIZE * n);
                                                    ˜ ^
Master/master_prep_base.c:164:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            P->llist_checked = (char *)malloc(CSIZE * n);
                                                    ˜ ^
Master/master_prep_base.c:171:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            P->impl_vars = (char *) calloc(CSIZE,n);
                                    ˜˜˜˜˜˜       ^
Master/master_prep_base.c:225:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(P->impl_rows, rows, sizeof(ROWinfo)*m); 
                                                         ˜^
Master/master_prep_base.c:226:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(P->impl_cols, cols, sizeof(COLinfo)*n); 
                                                         ˜^
Master/master_prep_base.c:227:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(P->impl_ub, ub, DSIZE*n);
                                           ˜^
Master/master_prep_base.c:228:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(P->impl_lb, lb, DSIZE*n);
                                           ˜^
Master/master_prep_base.c:268:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     memcpy(rows, P->impl_rows,sizeof(ROWinfo)*mip->m); 
                                                              ˜˜˜˜˜˜^
Master/master_prep_base.c:269:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     memcpy(cols, P->impl_cols, sizeof(COLinfo)*mip->n); 
                                                               ˜˜˜˜˜˜^
Master/master_prep_base.c:271:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     memcpy(ub, P->impl_ub, DSIZE*mip->n);
                                                 ˜˜˜˜˜˜^
Master/master_prep_base.c:272:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     memcpy(lb, P->impl_lb, DSIZE*mip->n);
                                                 ˜˜˜˜˜˜^
Master/master_prep_base.c:300:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(rows, P->impl_rows,sizeof(ROWinfo)*mip->m); 
                                                        ˜˜˜˜˜˜^
Master/master_prep_base.c:301:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(cols, P->impl_cols, sizeof(COLinfo)*mip->n);          
                                                         ˜˜˜˜˜˜^
Master/master_prep_base.c:302:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(ub, P->impl_ub, DSIZE*mip->n);
                                           ˜˜˜˜˜˜^
Master/master_prep_base.c:303:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(lb, P->impl_lb, DSIZE*mip->n);
                                           ˜˜˜˜˜˜^
Master/master_prep_base.c:609:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      col_factor = (prep_rc->col_factor = (double *)malloc(n*DSIZE));
                                                           ^˜
Master/master_prep_base.c:610:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      row_sum = (prep_rc->row_sum = (double *)calloc(m,DSIZE));
                                              ˜˜˜˜˜˜ ^
Master/master_prep_base.c:616:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      r_loc = (prep_rc->r_loc = (int *)malloc(m*ISIZE));
                                              ^˜
Master/master_prep_base.c:617:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(r_loc, P->user_row_ind, ISIZE*m);
                                          ˜^
Master/master_prep_base.c:621:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      col_del_ind = (prep_rc->col_del_ind = (int *)malloc(n*ISIZE));
                                                          ^˜
Master/master_prep_base.c:622:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      col_fix_type = (prep_rc->col_fix_type = (int *)malloc(n*ISIZE));
                                                            ^˜
Master/master_prep_base.c:623:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      col_fix_val = (prep_rc->col_fix_val = (double *)malloc(n*DSIZE));
                                                             ^˜
Master/master_prep_base.c:624:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      col_orig_type = (prep_rc->col_orig_type = (char *)malloc(n*CSIZE));
                                                               ^˜
Master/master_prep_base.c:625:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      row_factor = (prep_rc->row_factor = (double *)malloc(m*DSIZE));
                                                           ^˜
Master/master_prep_base.c:626:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      col_sum = (prep_rc->col_sum = (double *)calloc(n,DSIZE));
                                              ˜˜˜˜˜˜ ^
Master/master_prep_base.c:633:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      c_loc = (prep_rc->c_loc = (int *)malloc(n*ISIZE));
                                              ^˜
Master/master_prep_base.c:634:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(c_loc, P->user_col_ind, ISIZE*n);
                                          ˜^
Master/master_prep_base.c:1012:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     mip->aggr_ind = (int*)malloc(ISIZE*agg_size);
                                                       ˜^˜˜˜˜˜˜˜
Master/master_prep_base.c:1013:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     mip->aggr_to_ind = (int*)malloc(ISIZE*agg_size);
                                                          ˜^˜˜˜˜˜˜˜
Master/master_prep_base.c:1690:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_ind = (int *)malloc(n*ISIZE);
                                             ^˜
Master/master_prep_base.c:1691:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_aval = (double *)malloc(n*DSIZE);
                                                 ^˜
Master/master_prep_base.c:1692:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_rhs = (double *)malloc(n*DSIZE);
                                                ^˜
Master/master_prep_base.c:1695:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_rbeg = (int *)malloc((n+1)*ISIZE);
                                               ˜^˜ ˜
Master/master_prep_base.c:1697:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_rind = (int *)malloc(mip->subs_alloc_size*ISIZE);
                                              ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep_base.c:1698:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_rval = (double *)malloc(mip->subs_alloc_size*DSIZE);          
                                                 ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep_base.c:1701:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_rind = (int*)realloc((char*)mip->subs_rind, mip->subs_alloc_size * ISIZE);
                                                                     ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_prep_base.c:1702:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               mip->subs_rval = (double*)realloc((char*)mip->subs_rval, mip->subs_alloc_size * DSIZE);
                                                                        ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/master_prep_base.c:1779:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               update_row_type = (char *)malloc(CSIZE*m);
                                                     ˜^
Master/master_prep_base.c:1780:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               update_row_aval = (double *)malloc(DSIZE*m);
                                                       ˜^
Master/master_prep_base.c:1781:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               update_row_ind = (int *)malloc(ISIZE*m);
                                                   ˜^
Master/master_prep_base.c:1782:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               common_row_ind = (int *)malloc(ISIZE*m);
                                                   ˜^
Master/master_prep_base.c:1789:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               new_col_ind = (int *)malloc(ISIZE*m);
                                                ˜^
Master/master_prep_base.c:1790:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               new_col_val = (double *)malloc(DSIZE*m);
                                                   ˜^
Master/master_prep_base.c:2736:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(P->impl_rows, rows, sizeof(ROWinfo)*mip->m); 
                                                      ˜˜˜˜˜˜^
Master/master_prep_base.c:2737:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(P->impl_cols, cols, sizeof(COLinfo)*mip->n); 
                                                      ˜˜˜˜˜˜^
Master/master_prep_base.c:2738:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(P->impl_ub, ub, DSIZE*mip->n);
                                        ˜˜˜˜˜˜^
Master/master_prep_base.c:2739:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(P->impl_lb, lb, DSIZE*mip->n);
                                        ˜˜˜˜˜˜^
Master/master_prep_base.c:2804:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(rows, P->impl_rows,sizeof(ROWinfo)*mip->m); 
                                                     ˜˜˜˜˜˜^
Master/master_prep_base.c:2805:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(cols, P->impl_cols, sizeof(COLinfo)*mip->n); 
                                                      ˜˜˜˜˜˜^
Master/master_prep_base.c:2806:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(ub, P->impl_ub, DSIZE*mip->n);
                                        ˜˜˜˜˜˜^
Master/master_prep_base.c:2807:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(lb, P->impl_lb, DSIZE*mip->n);
                                        ˜˜˜˜˜˜^
Master/master_prep_base.c:3053:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   is_row_updated = (char *)calloc(CSIZE,mip->m);
                            ˜˜˜˜˜˜       ˜˜˜˜˜^
Master/master_prep_base.c:3054:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   row_updated_ind = (int *)malloc(ISIZE*mip->m);
                                        ˜˜˜˜˜˜^
Master/master_prep_base.c:4126:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rows = (ROWinfo *)calloc(m, sizeof(ROWinfo));   
                        ˜˜˜˜˜˜ ^
Master/master_prep_base.c:4132:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      cols = (COLinfo *)calloc(n, sizeof(COLinfo));           
                        ˜˜˜˜˜˜ ^
Master/master_prep_base.c:4889:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   r_matval = (mip->row_matval = (double *)malloc(nz*DSIZE)); 
                                                  ^˜˜
Master/master_prep_base.c:4890:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   r_matind = (mip->row_matind = (int *)malloc(nz*ISIZE)); 
                                               ^˜˜
Master/master_prep_base.c:4891:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   r_matbeg = (mip->row_matbeg = (int *)malloc((m+1)*ISIZE));
                                                ˜^˜ ˜
Master/master_prep_base.c:4892:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   r_lengths = (mip->row_lengths = (int *)calloc(m,ISIZE));
                                          ˜˜˜˜˜˜ ^
Master/master_prep_base.c:4893:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   o_sense = (mip->orig_sense = (char *)malloc(m *CSIZE));
                                               ^ ˜
Master/master_prep_base.c:4894:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   o_ind = (mip->orig_ind = (int *)malloc(n*ISIZE));
                                          ^˜
Master/master_prep_base.c:4895:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   u_col_ind = (P->user_col_ind) = (int *)malloc(n*ISIZE);
                                                 ^˜
Master/master_prep_base.c:4896:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   u_row_ind = (P->user_row_ind) = (int *)malloc(m*ISIZE);
                                                 ^˜
Master/master_prep_base.c:4897:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   c_lengths = (mip->col_lengths = (int *)calloc(n,ISIZE));
                                          ˜˜˜˜˜˜ ^
Master/master_prep_base.c:4933:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(o_sense, sense, CSIZE*m);   
                               ˜^
Master/master_prep_base.c:5003:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   fixed_ind = mip->fixed_ind = (int *)malloc(n*ISIZE);
                                              ^˜
Master/master_prep_base.c:5004:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   fixed_val = mip->fixed_val = (double *)malloc(n*DSIZE);
                                                 ^˜
Master/master_prep_base.c:5066:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset(row_new_inds, 0, ISIZE*m);
                                ˜^
Master/master_prep_base.c:5571:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(row->sos_rep, 0, CSIZE*sos_size); 
                                   ˜^˜˜˜˜˜˜˜
Master/master_prep_base.c:5573:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      row->sos_rep = (char *)calloc(CSIZE,sos_size);
                             ˜˜˜˜˜˜       ^˜˜˜˜˜˜˜
Master/master_prep_base.c:5611:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(sos_final, 0, CSIZE*sos_row_size);
                                ˜^˜˜˜˜˜˜˜˜˜˜˜
Master/master_prep_base.c:5702:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   double *proj_sol = (double *)calloc(DSIZE,n);
                                ˜˜˜˜˜˜       ^
Master/master_prep_base.c:5797:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   xval = (double *)malloc(DSIZE*n);
                                ˜^
Master/master_prep_base.c:5798:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   xind = (int *)malloc(ISIZE*n);
                             ˜^
Master/master_prep_base.c:5857:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   double *row_act = (double*)calloc(DSIZE,m);
                              ˜˜˜˜˜˜       ^
Master/master_prep_base.c:5929:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            double *r_matval = (double *)malloc(nz*DSIZE);
                                                ^˜˜
Master/master_prep_base.c:5930:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            int *r_matind = (int *)malloc(nz*ISIZE);
                                          ^˜˜
Master/master_prep_base.c:5931:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            int *r_matbeg = (int *)malloc((m+1)*ISIZE);
                                           ˜^˜ ˜
Master/master_prep_base.c:5932:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            int *r_lengths = (int *)calloc(m,ISIZE);
                                    ˜˜˜˜˜˜ ^
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/master_prep_base.c:26:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
120 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-master_prep_sr.lo `test -f 'Master/master_prep_sr.c' || echo './'`Master/master_prep_sr.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Master/master_prep_sr.c  -fno-common -DPIC -o libSym_la-master_prep_sr.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
Master/master_prep_sr.c:51:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset((*sr)->reversed_max, FALSE, CSIZE*n);
                                                 ˜^
Master/master_prep_sr.c:52:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset((*sr)->reversed_min, FALSE, CSIZE*n);
                                                 ˜^
Master/master_prep_sr.c:53:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset((*sr)->var_stat_max, SR_VAR_IN, ISIZE*n);
                                                     ˜^
Master/master_prep_sr.c:54:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset((*sr)->var_stat_min, SR_VAR_IN, ISIZE*n);
                                                     ˜^
Master/master_prep_sr.c:67:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->obj_max = (double *)malloc(DSIZE*n);
                                          ˜^
Master/master_prep_sr.c:68:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->matval_max = (double *)malloc(DSIZE*n);
                                             ˜^
Master/master_prep_sr.c:69:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->matind_max = (int *)malloc(ISIZE*n);
                                          ˜^
Master/master_prep_sr.c:70:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->ratio_max = (double *)malloc(DSIZE*n);
                                            ˜^
Master/master_prep_sr.c:71:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->reversed_max = (char *)malloc(CSIZE*n);
                                             ˜^
Master/master_prep_sr.c:73:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->obj_min = (double *)malloc(DSIZE*n);
                                          ˜^
Master/master_prep_sr.c:74:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->matval_min = (double *)malloc(DSIZE*n);
                                             ˜^
Master/master_prep_sr.c:75:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->matind_min = (int *)malloc(ISIZE*n);
                                          ˜^
Master/master_prep_sr.c:76:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->ratio_min = (double *)malloc(DSIZE*n);
                                            ˜^
Master/master_prep_sr.c:77:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->reversed_min = (char *)malloc(CSIZE*n);   
                                             ˜^
Master/master_prep_sr.c:81:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_max_opt = (double *)malloc(n* DSIZE);
                                         ^˜
Master/master_prep_sr.c:82:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_min_opt = (double *)malloc(n* DSIZE);
                                         ^˜
Master/master_prep_sr.c:83:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_stat_max = (int *)malloc(ISIZE*n);
                                            ˜^
Master/master_prep_sr.c:84:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_stat_min = (int *)malloc(n* ISIZE);
                                       ^˜
Master/master_prep_sr.c:85:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_obj_max = (double *)malloc(n* DSIZE);
                                         ^˜
Master/master_prep_sr.c:86:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_obj_min = (double *)malloc(n* DSIZE);
                                         ^˜
Master/master_prep_sr.c:87:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_matval_max = (double *)malloc(n* DSIZE);
                                            ^˜
Master/master_prep_sr.c:88:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->var_matval_min = (double *)malloc(n* DSIZE);   
                                            ^˜
Master/master_prep_sr.c:91:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->tmp_ind = (int *)malloc(ISIZE*n);
                                       ˜^
Master/master_prep_sr.c:92:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   (*sr)->fixed_ind = (int *)malloc(ISIZE*n);
                                         ˜^
Master/master_prep_sr.c:149:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      P->rows_checked = (char *)malloc(m* CSIZE);
                                       ^˜
Master/master_prep_sr.c:196:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rows_checked, FALSE, CSIZE*m); 
                                       ˜^
Master/master_prep_sr.c:552:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(tmp_ind, sr->fixed_ind, ISIZE*sr->max_n);
                                          ˜˜˜˜˜^˜˜˜˜
Master/master_prep_sr.c:587:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(tmp_ind, sr->fixed_ind, ISIZE*sr->min_n);
                                          ˜˜˜˜˜^˜˜˜˜
28 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-tm_func.lo `test -f 'TreeManager/tm_func.c' || echo './'`TreeManager/tm_func.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c TreeManager/tm_func.c  -fno-common -DPIC -o libSym_la-tm_func.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
TreeManager/tm_func.c:143:17: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
   SRANDOM(par->random_seed);
   ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:25:31: note: expanded from macro 'SRANDOM'
#define SRANDOM(seed) srandom(seed)
                              ^
TreeManager/tm_func.c:146:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   tm->active_nodes = (bc_node **) calloc(par->max_active_nodes, sizeof(bc_node *));
                                   ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:230:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tm->cp.free_ind = (int *) malloc(par->max_cp_num * ISIZE);
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
TreeManager/tm_func.c:237:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      tm->nodes_per_cp = (int *) calloc(tm->par.max_cp_num, ISIZE);
                                 ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:238:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      tm->active_nodes_per_cp = (int *) calloc(tm->par.max_cp_num, ISIZE);
                                        ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:278:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      root->desc.uind.list = (int *) malloc(rootdesc->uind.size*ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:280:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             rootdesc->uind.size*ISIZE);
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:819:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (tm->has_ub && tm->ub && tm->lb > -SYM_INFINITY){
                    ˜˜ ˜˜˜˜^˜
TreeManager/tm_func.c:862:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
     if (tm->has_ub && tm->ub && tm->lb > -SYM_INFINITY) {
                    ˜˜ ˜˜˜˜^˜
TreeManager/tm_func.c:748:8: warning: unused variable 'thread_num' [-Wunused-variable]
   int thread_num = 0;
       ^
TreeManager/tm_func.c:1017:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             REALLOC(tm->nextphase_cand, bc_node *, tm->nextphase_cand_size,
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:1147:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           tm->samephase_cand_size, size + 1, BB_BUNCH);
           ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:1340:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   node->children = (bc_node **) calloc(bobj->child_num, sizeof(bc_node *));
                                 ˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:1672:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 tm->nextphase_cand_size, tm->nextphase_candnum+1, BB_BUNCH);
                 ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:2085:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              (tm->cut_num / tm->stat.created + 5) * BB_BUNCH);
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:49:33: note: expanded from macro 'REALLOC'
      oldsize = newsize + (int)(block_size);                                 \
                                ^
TreeManager/tm_func.c:2084:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      REALLOC(tm->cuts, cut_data *, tm->allocated_cut_num, tm->cut_num + 1,
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:2392:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         int *dlist = dad->list = (int *) malloc((oldsize+newsize) * ISIZE);
                                                  ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜  ˜
TreeManager/tm_func.c:2393:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         int *dstat = dad->stat = (int *) malloc((oldsize+newsize) * ISIZE);
                                                  ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜  ˜
TreeManager/tm_func.c:2511:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         array->list = list = (int *) malloc(array->size * ISIZE);
                                             ˜˜˜˜˜˜˜^˜˜˜ ˜
TreeManager/tm_func.c:2578:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(origlist, toadd, (k+1) * ISIZE);
                                  ˜^˜  ˜
TreeManager/tm_func.c:2737:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           tm->samephase_cand_size, tm->nextphase_candnum + 1, BB_BUNCH);
           ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:2996:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              tm->nextphase_cand_size, tm->nextphase_candnum+1, BB_BUNCH);
              ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:3190:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         *children = (int *) malloc(node->bobj.child_num*ISIZE);
                                    ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:3200:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         node->desc.uind.list = (int *) malloc(node->desc.uind.size*ISIZE);
                                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3209:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.not_fixed.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3217:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         node->desc.cutind.list = (int *) malloc(node->desc.cutind.size*ISIZE);
                                                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3228:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.basevars.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3231:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(node->desc.basis.basevars.size*ISIZE);   
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3245:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.extravars.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3248:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(node->desc.basis.extravars.size*ISIZE);   
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3262:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.baserows.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3265:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(node->desc.basis.baserows.size*ISIZE);   
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3279:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(node->desc.basis.extrarows.size*ISIZE);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3282:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) malloc(node->desc.basis.extrarows.size*ISIZE);   
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3296:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              tm->nextphase_cand_size, tm->nextphase_candnum+1, BB_BUNCH);
              ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_func.c:3360:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         malloc(root->bobj.child_num*sizeof(bc_node *));
                ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:3414:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tm->cuts = (cut_data **) malloc(tm->allocated_cut_num*sizeof(cut_data *));
                                   ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:3422:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tm->cuts[i]->coef = (char *) malloc(tm->cuts[i]->size*sizeof(char));
                                          ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_func.c:3567:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   base->userind = (int *) malloc(base->varnum*ISIZE);
                                  ˜˜˜˜˜˜^˜˜˜˜˜˜
TreeManager/tm_func.c:4012:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_ind = (int *)malloc(max_length*ISIZE);
                           ^˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_func.c:4078:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  ISIZE*new_cnt);
                       ˜^˜˜˜˜˜˜
TreeManager/tm_func.c:4080:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  CSIZE*new_cnt);
                       ˜^˜˜˜˜˜˜
TreeManager/tm_func.c:4082:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  DSIZE*new_cnt);
                       ˜^˜˜˜˜˜˜
TreeManager/tm_func.c:4098:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         bnd_change->index = (int *)malloc(cnt*ISIZE);
                                           ^˜˜˜
TreeManager/tm_func.c:4099:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         bnd_change->lbub  = (char *)malloc(cnt*CSIZE);
                                            ^˜˜˜
TreeManager/tm_func.c:4100:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         bnd_change->value = (double *)malloc(cnt*DSIZE);
                                              ^˜˜˜
TreeManager/tm_func.c:4101:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         bnd_change->index = (int *) memcpy(bnd_change->index, ind, ISIZE*cnt);
                                                                         ˜^˜˜
TreeManager/tm_func.c:4102:74: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         bnd_change->lbub  = (char *) memcpy(bnd_change->lbub, lu, CSIZE*cnt);
                                                                        ˜^˜˜
TreeManager/tm_func.c:4104:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               DSIZE*cnt);
                    ˜^˜˜
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from TreeManager/tm_func.c:37:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
86 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-tm_proccomm.lo `test -f 'TreeManager/tm_proccomm.c' || echo './'`TreeManager/tm_proccomm.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c TreeManager/tm_proccomm.c  -fno-common -DPIC -o libSym_la-tm_proccomm.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
TreeManager/tm_proccomm.c:59:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   pset.procs = (int *) malloc(procnum * ISIZE);
                               ^˜˜˜˜˜˜ ˜
TreeManager/tm_proccomm.c:61:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   pset.free_ind = (int *) malloc(procnum * ISIZE);
                                  ^˜˜˜˜˜˜ ˜
TreeManager/tm_proccomm.c:260:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      extravar.list = (int *) malloc(extravar.size*ISIZE);
                                     ˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_proccomm.c:262:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         basis.extravars.stat = (int *) malloc(extravar.size*ISIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_proccomm.c:265:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      extrarow.list = (int *) malloc(extrarow.size*ISIZE);
                                     ˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_proccomm.c:267:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         basis.extrarows.stat = (int *) malloc(extrarow.size*ISIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_proccomm.c:270:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      not_fixed.list = (int *) malloc(not_fixed.size*ISIZE);
                                      ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_proccomm.c:272:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      basis.basevars.stat = (int *) malloc(tm->bvarnum*ISIZE);
                                           ˜˜˜˜^˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:274:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      basis.baserows.stat = (int *) malloc(tm->bcutnum*ISIZE);
                                           ˜˜˜˜^˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:293:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(extravar.list, n->desc.uind.list, ISIZE * extravar.size);
                                                        ˜ ˜˜˜˜˜˜˜˜˜^˜˜˜
TreeManager/tm_proccomm.c:307:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   path[ev_ind]->desc.basis.extravars.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
TreeManager/tm_proccomm.c:326:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   basis.basevars.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
TreeManager/tm_proccomm.c:342:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(extrarow.list, n->desc.cutind.list, ISIZE * extrarow.size);
                                                          ˜ ˜˜˜˜˜˜˜˜˜^˜˜˜
TreeManager/tm_proccomm.c:356:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   path[er_ind]->desc.basis.extrarows.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
TreeManager/tm_proccomm.c:374:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   basis.baserows.size * ISIZE);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
TreeManager/tm_proccomm.c:389:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(not_fixed.list, n->desc.not_fixed.list, ISIZE*not_fixed.size);
                                                             ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
TreeManager/tm_proccomm.c:396:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     lp[thread_num]->frac_var_cnt = (int*)calloc(ISIZE,tm->bvarnum + extravar.size);      
                                          ˜˜˜˜˜˜       ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:398:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(lp[thread_num]->frac_var_cnt, 0, ISIZE*(tm->bvarnum + extravar.size));
                                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:553:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         malloc(extrarow.size*sizeof(cut_data *));
                ˜˜˜˜˜˜˜˜˜^˜˜˜˜
TreeManager/tm_proccomm.c:568:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memcpy((char *)new_desc->desc, (char *)desc->desc, new_desc->desc_size);
      ˜˜˜˜˜˜                                             ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:401:10: warning: unused variable 'frac_var_cnt' [-Wunused-variable]
   int * frac_var_cnt = lp[thread_num]->frac_var_cnt;
         ^
TreeManager/tm_proccomm.c:651:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            n->sol = (double *) malloc (DSIZE * n->sol_size);
                                              ˜ ˜˜˜^˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:728:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      desc->desc = (char *) malloc(desc->desc_size);
                            ˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:767:8: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 tm->nextphase_cand_size, tm->nextphase_candnum+1, BB_BUNCH);
                 ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_proccomm.c:949:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   bobj->solutions = (double **) calloc(bobj->child_num, sizeof(double *));
                                 ˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1021:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            tm->best_sol.xind = (int *) malloc(tm->best_sol.xlength*ISIZE);
                                               ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1022:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            tm->best_sol.xval = (double *) malloc(tm->best_sol.xlength*DSIZE);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1066:8: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 tm->nextphase_cand_size, tm->nextphase_candnum+1, BB_BUNCH);
                 ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_proccomm.c:1137:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              new_cutnum, (old_cutnum / tm->stat.created + 5) * BB_BUNCH);
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:49:33: note: expanded from macro 'REALLOC'
      oldsize = newsize + (int)(block_size);                                 \
                                ^
TreeManager/tm_proccomm.c:1136:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      REALLOC(tm->cuts, cut_data *, tm->allocated_cut_num, old_cutnum +
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
TreeManager/tm_proccomm.c:1124:56: warning: unused variable 'itmp' [-Wunused-variable]
   int old_cutnum = tm->cut_num, new_cutnum = cutnum, *itmp, i;
                                                       ^
TreeManager/tm_proccomm.c:1484:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            bnd_change->index = (int *)malloc(memory_size*ISIZE);
                                              ^˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1485:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            bnd_change->lbub = (char *)malloc(memory_size*CSIZE);
                                              ^˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1486:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            bnd_change->value = (double *)malloc(memory_size*DSIZE);
                                                 ^˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1488:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(bnd_change->index, p_index, ISIZE*p_num_changes);
                                                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1489:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(bnd_change->lbub,  p_lbub,  CSIZE*p_num_changes);
                                                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1490:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(bnd_change->value, p_value, DSIZE*p_num_changes);
                                                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1511:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     index = (int *)realloc(index, memory_size*ISIZE);
                                                   ^˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1512:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     lbub = (char *)realloc(lbub, memory_size*CSIZE);
                                                  ^˜˜˜˜˜˜˜˜˜˜˜
TreeManager/tm_proccomm.c:1513:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     value = (double *)realloc(value, memory_size*DSIZE);
                                                      ^˜˜˜˜˜˜˜˜˜˜˜
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from TreeManager/tm_proccomm.c:24:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
77 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_solver.lo `test -f 'LP/lp_solver.c' || echo './'`LP/lp_solver.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_solver.c  -fno-common -DPIC -o libSym_la-lp_solver.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_solver.c:192:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->dualsol = (double *) malloc(lp_data->maxm * DSIZE);
                                              ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:194:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->slacks  = (double *) malloc(lp_data->maxm * DSIZE);
                                              ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:197:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                               lp_data->maxm * DSIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:199:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                               lp_data->maxm * DSIZE);
                                               ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:203:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                             lp_data->maxm*sizeof(row_data));
                                             ˜˜˜˜˜˜˜˜˜^˜˜˜˜
LP/lp_solver.c:211:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->x = (double *) malloc(lp_data->maxn * DSIZE);
                                        ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:213:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->dj = (double *) malloc(lp_data->maxn * DSIZE);
                                         ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:215:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->status = (char *) malloc(lp_data->maxn * CSIZE);
                                           ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:217:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->random_hash = (double *) malloc(lp_data->maxn * DSIZE);
                                                  ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:219:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->heur_solution = (double *) malloc(lp_data->maxn * DSIZE);
                                                    ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:221:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->col_solution = (double *) malloc(lp_data->maxn * DSIZE);
                                                   ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:230:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                         lp_data->maxn * DSIZE);
                                         ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:232:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                          lp_data->maxn * DSIZE);
                                          ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:234:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                            lp_data->maxn * CSIZE);
                                            ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:236:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                         lp_data->maxn * DSIZE);
                                         ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:238:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               lp_data->heur_solution, lp_data->maxn * DSIZE);
                                       ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:240:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               lp_data->col_solution, lp_data->maxn * DSIZE);
                                      ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_solver.c:263:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tmp->c = (char *) malloc(CSIZE * 4 * maxmax);
                                         ˜ ^˜˜˜˜˜
LP/lp_solver.c:264:45: warning: operand of ? changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tmp->i1 = (int *) malloc(ISIZE * MAX(4*maxm, 4*maxn + 1));
                                     ˜     ˜^˜˜˜˜
../include/sym_macros.h:190:32: note: expanded from macro 'MAX'
#define MAX(a,b) ((a) > (b) ? (a) : (b))
                               ^
LP/lp_solver.c:264:59: warning: operand of ? changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tmp->i1 = (int *) malloc(ISIZE * MAX(4*maxm, 4*maxn + 1));
                                     ˜             ˜˜˜˜˜˜˜^˜˜
../include/sym_macros.h:190:38: note: expanded from macro 'MAX'
#define MAX(a,b) ((a) > (b) ? (a) : (b))
                                     ^
LP/lp_solver.c:265:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tmp->d = (double *) malloc(DSIZE * 4 * maxmax);
                                           ˜ ^˜˜˜˜˜
LP/lp_solver.c:271:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         tmp->i2 = (int *) malloc(2*maxmax * ISIZE);
                                  ˜^˜˜˜˜˜˜ ˜
LP/lp_solver.c:272:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         tmp->p1 = (void **) malloc(maxm * sizeof(void *));
                                    ^˜˜˜ ˜
LP/lp_solver.c:273:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         tmp->p2 = (void **) malloc(maxm * sizeof(void *));
                                    ^˜˜˜ ˜
LP/lp_solver.c:2652:13: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
   int sp = si->specialOptions();
       ˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:2654:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
   si->setSpecialOptions(sp);
   ˜˜                    ^˜
LP/lp_solver.c:2995:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(lp_data->x, lp_data->si->getColSolution(), lp_data->n * DSIZE);
                                                     ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_solver.c:3002:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(lp_data->dualsol, lp_data->si->getRowPrice(), lp_data->m * DSIZE);
                                                        ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_solver.c:3003:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(lp_data->dj, lp_data->si->getReducedCost(), lp_data->n * DSIZE);
                                                      ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_solver.c:3083:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  double *range = (double *) calloc(cnt, DSIZE);
                             ˜˜˜˜˜˜ ^˜˜
LP/lp_solver.c:3181:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy (lp_data->mip->obj,si_objcoeffs,lp_data->n*DSIZE);
                                          ˜˜˜˜˜˜˜˜˜^˜
LP/lp_solver.c:3308:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   int *which = (int *) calloc(delnum, ISIZE);
                        ˜˜˜˜˜˜ ^˜˜˜˜˜
LP/lp_solver.c:3355:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   double *range = (double *) calloc(length, DSIZE);
                              ˜˜˜˜˜˜ ^˜˜˜˜˜
LP/lp_solver.c:3400:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   double *range = (double *) calloc(length, DSIZE);
                              ˜˜˜˜˜˜ ^˜˜˜˜˜
LP/lp_solver.c:3482:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->obj    = (double *) malloc(DSIZE * mip->n);
                                            ˜ ˜˜˜˜˜^
LP/lp_solver.c:3485:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->ub     = (double *) malloc(DSIZE * mip->n);
                                            ˜ ˜˜˜˜˜^
LP/lp_solver.c:3486:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->lb     = (double *) malloc(DSIZE * mip->n);
                                            ˜ ˜˜˜˜˜^
LP/lp_solver.c:3487:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      mip->is_int = (char *)   calloc(CSIZE, mip->n);
                               ˜˜˜˜˜˜        ˜˜˜˜˜^
LP/lp_solver.c:3488:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->obj, mps.getObjCoefficients(), DSIZE * mip->n); 
                                                       ˜ ˜˜˜˜˜^
LP/lp_solver.c:3489:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->ub, mps.getColUpper(), DSIZE * mip->n); 
                                               ˜ ˜˜˜˜˜^
LP/lp_solver.c:3490:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->lb, mps.getColLower(), DSIZE * mip->n); 
                                               ˜ ˜˜˜˜˜^
LP/lp_solver.c:3492:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->matbeg = (int *) malloc(ISIZE * (mip->n + 1));
                                         ˜  ˜˜˜˜˜˜˜^˜˜
LP/lp_solver.c:3493:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->matbeg, matrixByCol->getVectorStarts(), ISIZE * (mip->n + 1));
                                                                ˜  ˜˜˜˜˜˜˜^˜˜
LP/lp_solver.c:3495:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->colname = (char **) malloc(sizeof(char *) * mip->n);  
                                                     ˜ ˜˜˜˜˜^
LP/lp_solver.c:3498:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->rhs    = (double *) malloc(DSIZE * mip->m);
                                            ˜ ˜˜˜˜˜^
LP/lp_solver.c:3499:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->sense  = (char *)   malloc(CSIZE * mip->m);
                                            ˜ ˜˜˜˜˜^
LP/lp_solver.c:3500:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->rngval = (double *) malloc(DSIZE * mip->m);
                                            ˜ ˜˜˜˜˜^
LP/lp_solver.c:3501:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->rhs, mps.getRightHandSide(), DSIZE * mip->m); 
                                                     ˜ ˜˜˜˜˜^
LP/lp_solver.c:3502:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->sense, mps.getRowSense(), CSIZE * mip->m); 
                                                  ˜ ˜˜˜˜˜^
LP/lp_solver.c:3503:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->rngval, mps.getRowRange(), DSIZE * mip->m); 
                                                   ˜ ˜˜˜˜˜^
LP/lp_solver.c:3509:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->matval = (double *) malloc(DSIZE*mip->matbeg[mip->n]);
                                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3510:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->matind = (int *)    malloc(ISIZE*mip->matbeg[mip->n]);
                                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3512:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->matval, matrixByCol->getElements(), DSIZE * mip->matbeg[mip->n]);  
                                                            ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3513:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->matind, matrixByCol->getIndices(), ISIZE * mip->matbeg[mip->n]);
                                                           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3550:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->obj    = (double *) malloc(DSIZE * mip->n);
                                         ˜ ˜˜˜˜˜^
LP/lp_solver.c:3553:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->rhs    = (double *) malloc(DSIZE * mip->m);
                                         ˜ ˜˜˜˜˜^
LP/lp_solver.c:3554:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->sense  = (char *)   malloc(CSIZE * mip->m);
                                         ˜ ˜˜˜˜˜^
LP/lp_solver.c:3555:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->rngval = (double *) malloc(DSIZE * mip->m);
                                         ˜ ˜˜˜˜˜^
LP/lp_solver.c:3556:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->ub     = (double *) malloc(DSIZE * mip->n);
                                         ˜ ˜˜˜˜˜^
LP/lp_solver.c:3557:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->lb     = (double *) malloc(DSIZE * mip->n);
                                         ˜ ˜˜˜˜˜^
LP/lp_solver.c:3558:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   mip->is_int = (char *)   calloc(CSIZE, mip->n);
                            ˜˜˜˜˜˜        ˜˜˜˜˜^
LP/lp_solver.c:3561:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      mip->obj1   = (double *) calloc(mip->n, DSIZE);
                               ˜˜˜˜˜˜ ˜˜˜˜˜^
LP/lp_solver.c:3562:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      mip->obj2   = (double *) calloc(mip->n, DSIZE);
                               ˜˜˜˜˜˜ ˜˜˜˜˜^
LP/lp_solver.c:3563:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->obj, lp.getObjCoefficients(0), DSIZE * mip->n); 
                                                       ˜ ˜˜˜˜˜^
LP/lp_solver.c:3564:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->obj1, lp.getObjCoefficients(0), DSIZE * mip->n); 
                                                        ˜ ˜˜˜˜˜^
LP/lp_solver.c:3565:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->obj2, lp.getObjCoefficients(1), DSIZE * mip->n);
                                                        ˜ ˜˜˜˜˜^
LP/lp_solver.c:3571:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(mip->obj, lp.getObjCoefficients(), DSIZE * mip->n);
                                                      ˜ ˜˜˜˜˜^
LP/lp_solver.c:3574:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->rhs, lp.getRightHandSide(), DSIZE * mip->m); 
                                                 ˜ ˜˜˜˜˜^
LP/lp_solver.c:3575:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->sense, lp.getRowSense(), CSIZE * mip->m); 
                                              ˜ ˜˜˜˜˜^
LP/lp_solver.c:3576:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->rngval, lp.getRowRange(), DSIZE * mip->m); 
                                               ˜ ˜˜˜˜˜^
LP/lp_solver.c:3577:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->ub, lp.getColUpper(), DSIZE * mip->n); 
                                           ˜ ˜˜˜˜˜^
LP/lp_solver.c:3578:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->lb, lp.getColLower(), DSIZE * mip->n); 
                                           ˜ ˜˜˜˜˜^
LP/lp_solver.c:3584:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->matbeg = (int *) malloc(ISIZE * (mip->n + 1));
                                      ˜  ˜˜˜˜˜˜˜^˜˜
LP/lp_solver.c:3585:72: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->matbeg, matrixByCol->getVectorStarts(), ISIZE * (mip->n + 1));
                                                             ˜  ˜˜˜˜˜˜˜^˜˜
LP/lp_solver.c:3587:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->matval = (double *) malloc(DSIZE*mip->matbeg[mip->n]);
                                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3588:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->matind = (int *)    malloc(ISIZE*mip->matbeg[mip->n]);
                                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3590:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->matval, matrixByCol->getElements(), DSIZE * mip->matbeg[mip->n]);  
                                                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3591:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(mip->matind, matrixByCol->getIndices(), ISIZE * mip->matbeg[mip->n]);  
                                                        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_solver.c:3593:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   mip->colname = (char **) malloc(sizeof(char *) * mip->n); 
                                                  ˜ ˜˜˜˜˜^
LP/lp_solver.c:3640:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   obj = (double *) malloc(DSIZE*mip->n);
                                ˜˜˜˜˜˜^
LP/lp_solver.c:3641:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(obj, mip->obj, DSIZE*mip->n);
                              ˜˜˜˜˜˜^
LP/lp_solver.c:3669:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   obj = (double *) malloc(DSIZE*mip->n);
                                ˜˜˜˜˜˜^
LP/lp_solver.c:3670:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(obj, mip->obj, DSIZE*mip->n);
                              ˜˜˜˜˜˜^
LP/lp_solver.c:3677:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   rlb = (double *) malloc(DSIZE*mip->m);
                                ˜˜˜˜˜˜^
LP/lp_solver.c:3678:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   rub = (double *) malloc(DSIZE*mip->m);
                                ˜˜˜˜˜˜^
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_solver.c:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
122 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_varfunc.lo `test -f 'LP/lp_varfunc.c' || echo './'`LP/lp_varfunc.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_varfunc.c  -fno-common -DPIC -o libSym_la-lp_varfunc.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:75:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(lu, 'U', to_ub_num);
      ˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜
LP/lp_varfunc.c:88:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      memset(lu + cnt, 'L', to_lb_num);
      ˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜
LP/lp_varfunc.c:110:62: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          new_cols->dual_feas == NOT_TDF ? MOVE_TO_UB : MOVE_TO_LB, new_vars);
                                                                    ^˜˜˜˜˜˜˜
LP/lp_varfunc.c:132:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset(lp_data->x + oldn, 0, new_vars * DSIZE);
                                ^˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:203:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset((char *)delstat, 0, n * ISIZE);
                                    ^ ˜
LP/lp_varfunc.c:435:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tmp_not_fixed = (int *) malloc(p->par.not_fixed_storage_size * ISIZE);
                                  ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:441:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (int *) malloc(p->vars_at_lb * ISIZE) : NULL;
                     ˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:443:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (int *) malloc(p->vars_at_ub * ISIZE) : NULL;
                     ˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:444:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->objx = (double *) malloc(max_new_vars * DSIZE);
                                      ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:445:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->lb = (double *) malloc(max_new_vars * DSIZE);
                                    ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:446:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->ub = (double *) malloc(max_new_vars * DSIZE);
                                    ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:447:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->matbeg = (int *) malloc((max_new_vars+1) * ISIZE);
                                      ˜˜˜˜˜˜˜˜˜˜˜˜^˜  ˜
LP/lp_varfunc.c:449:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->matind = (int *) malloc(max_new_nzcnt * ISIZE);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:450:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->matval = (double *) malloc(max_new_nzcnt * DSIZE);
                                        ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:451:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_cols->userind = (int *) malloc(max_new_vars * ISIZE);
                                      ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_varfunc.c:627:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   (char *)colind, collen * ISIZE);
                                   ^˜˜˜˜˜ ˜
LP/lp_varfunc.c:629:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   (char *)colval, collen * DSIZE);
                                   ^˜˜˜˜˜ ˜
LP/lp_varfunc.c:889:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    new_cols->nzcnt * ISIZE);
                    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜ ˜
LP/lp_varfunc.c:891:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    new_cols->nzcnt * DSIZE);
                    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜ ˜
LP/lp_varfunc.c:919:70: warning: for loop has empty body [-Wempty-body]
   for (j = extranum - 1; j >= 0 && extra[j]->userind > prevind; j--); j++;
                                                                     ^
LP/lp_varfunc.c:919:70: note: put the semicolon on a separate line to silence this warning
LP/lp_varfunc.c:1006:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               lp_data->n - p->base.varnum,
               ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_varfunc.c:1023:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               lp_data->n - p->base.varnum,
               ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_varfunc.c:1080:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   indices = (int *)malloc(cnt*ISIZE);
                           ^˜˜˜
LP/lp_varfunc.c:1081:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   values = (double *)malloc(cnt*DSIZE);
                             ^˜˜˜
LP/lp_varfunc.c:1082:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   lb = (double *)malloc(cnt*DSIZE);
                         ^˜˜˜
LP/lp_varfunc.c:1083:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   ub = (double *)malloc(cnt*DSIZE);
                         ^˜˜˜
LP/lp_varfunc.c:1104:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rc->indices = (int **)calloc(rc->size,sizeof(int *));
                            ˜˜˜˜˜˜ ˜˜˜˜^˜˜˜
LP/lp_varfunc.c:1105:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rc->values  = (double **)calloc(rc->size,sizeof(double *));
                               ˜˜˜˜˜˜ ˜˜˜˜^˜˜˜
LP/lp_varfunc.c:1106:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rc->lb      = (double **)calloc(rc->size,sizeof(double *));
                               ˜˜˜˜˜˜ ˜˜˜˜^˜˜˜
LP/lp_varfunc.c:1107:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rc->ub      = (double **)calloc(rc->size,sizeof(double *));
                               ˜˜˜˜˜˜ ˜˜˜˜^˜˜˜
LP/lp_varfunc.c:1108:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rc->obj     = (double *)malloc(rc->size*DSIZE);
                                     ˜˜˜˜^˜˜˜˜
LP/lp_varfunc.c:1109:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rc->cnt     = (int *)calloc(rc->size,ISIZE);
                           ˜˜˜˜˜˜ ˜˜˜˜^˜˜˜
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_varfunc.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
69 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_rowfunc.lo `test -f 'LP/lp_rowfunc.c' || echo './'`LP/lp_rowfunc.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_rowfunc.c  -fno-common -DPIC -o libSym_la-lp_rowfunc.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_rowfunc.c:226:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                         (p->slack_cut_num + deletable) * sizeof(cut_data *));
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜  ˜
LP/lp_rowfunc.c:230:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(free_rows, FALSE, bcutnum * ISIZE);
                                  ^˜˜˜˜˜˜ ˜
LP/lp_rowfunc.c:297:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      REALLOC(p->waiting_rows, waiting_row *, p->waiting_rows_size,
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
LP/lp_rowfunc.c:300:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             new_row_num * sizeof(waiting_row *));
             ^˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_rowfunc.c:355:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      qsort((char *)p->waiting_rows, p->waiting_row_num,
      ˜˜˜˜˜                          ˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_rowfunc.c:366:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (p->waiting_row_num - added_rows) * sizeof(waiting_row *));
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜  ˜
LP/lp_rowfunc.c:399:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(rmatind + rmatbeg[i], wrow->matind, wrow->nzcnt * ISIZE);
                                                 ˜˜˜˜˜˜^˜˜˜˜ ˜
LP/lp_rowfunc.c:400:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(rmatval + rmatbeg[i], wrow->matval, wrow->nzcnt * DSIZE);
                                                 ˜˜˜˜˜˜^˜˜˜˜ ˜
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_rowfunc.c:19:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
45 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_genfunc.lo `test -f 'LP/lp_genfunc.c' || echo './'`LP/lp_genfunc.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_genfunc.c  -fno-common -DPIC -o libSym_la-lp_genfunc.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:97:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      p->obj_history = (double *) malloc((i + 1) * DSIZE);
                                          ˜˜^˜˜  ˜
LP/lp_genfunc.c:110:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (row_data *) malloc((p->base.cutnum + BB_BUNCH) * sizeof(row_data));
                           ˜˜˜˜˜˜˜˜^˜˜˜˜˜ ˜
LP/lp_genfunc.c:118:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         malloc(p->base.varnum * sizeof(var_desc *));
                ˜˜˜˜˜˜˜˜^˜˜˜˜˜ ˜
LP/lp_genfunc.c:127:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   p->lp_data->not_fixed = (int *) malloc(p->par.not_fixed_storage_size*ISIZE);
                                          ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:128:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   p->lp_data->tmp.iv = (int *) malloc(p->par.not_fixed_storage_size* 2*ISIZE);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
LP/lp_genfunc.c:1173:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *rstat = (int *) malloc(m * ISIZE);
                               ^ ˜
LP/lp_genfunc.c:1174:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *cstat = (int *) malloc(n * ISIZE);
                               ^ ˜
LP/lp_genfunc.c:1175:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *erstat = (extrarownum == 0) ? NULL : (int *) malloc(extrarownum*ISIZE);
                                                            ^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1176:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *ecstat = (extravarnum == 0) ? NULL : (int *) malloc(extravarnum*ISIZE);
                                                            ^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1186:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(erstat, rstat + bcutnum, extrarownum * ISIZE);
                                      ^˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:1188:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(ecstat, cstat + bvarnum, extravarnum * ISIZE);
                                      ^˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:1202:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      row_data *tmp_rows = (row_data *) malloc(cutcnt*sizeof(row_data));
                                               ^˜˜˜˜˜˜
LP/lp_genfunc.c:1232:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      desc->uind.list = ulist = (int *) malloc(extravarnum * ISIZE);
                                               ^˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:1258:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         desc->not_fixed.list = (int *) malloc(desc->not_fixed.size * ISIZE);
                                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_genfunc.c:1260:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                lp_data->not_fixed_num * ISIZE);
                ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:1299:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      desc->cutind.list = clist = (int *) malloc(cutindsize * ISIZE);
                                                 ^˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:1731:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      index = bnd_change->index = (int *)malloc(num_bnd_changes*ISIZE);
                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1732:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      lbub  = bnd_change->lbub = (char *)malloc(num_bnd_changes*CSIZE);
                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1733:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      value = bnd_change->value = (double *)malloc(num_bnd_changes*DSIZE);
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1782:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      index = bnd_change->index = (int *)malloc(num_bnd_changes*ISIZE);
                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1783:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      lbub = bnd_change->lbub = (char *)malloc(num_bnd_changes*CSIZE);
                                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1784:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      value = bnd_change->value = (double *)malloc(num_bnd_changes*DSIZE);
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1792:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            bnd_change->num_changes*ISIZE);
            ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1794:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            bnd_change->num_changes*CSIZE);
            ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:1796:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            bnd_change->num_changes*DSIZE);
            ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:2970:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      lp_data->hashes = (double *)malloc(DSIZE*lp_data->hashes_num);
                                              ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:2975:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      lp_data->accepted_ind = (int *)malloc(ISIZE*lp_data->accepted_num);
                                                 ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3211:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         *cuts = (cut_data **)realloc(*cuts, (*num_cuts+new_cut_num)*sizeof(cut_data *));
                                              ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:3213:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         *cuts = (cut_data **)malloc(new_cut_num*sizeof(cut_data *));
                                     ^˜˜˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3255:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      sym_cut->size = (int)(DSIZE + num_elements * (ISIZE + DSIZE));
                                    ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:3256:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      sym_cut->coef = (char *) malloc (sym_cut->size);
                               ˜˜˜˜˜˜  ˜˜˜˜˜˜˜˜˜^˜˜˜
LP/lp_genfunc.c:3264:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      matind = (int *) (sym_cut->coef + (num_elements + 1)*DSIZE);
                                         ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜ ˜
LP/lp_genfunc.c:3265:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy((char *)matval, (char *)elements, num_elements * DSIZE);
                                               ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:3267:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy((char*)matind, (char *)indices, num_elements * ISIZE);
                                                ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:3272:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy((char*)matind, (char *)tmp_matind, num_elements * ISIZE);
                                                   ^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_genfunc.c:3386:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip_inf->c_ind = (int *)malloc(ISIZE*alloc_size);
                                          ˜^˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3387:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip_inf->c_beg = (int *)malloc(ISIZE*(alloc_num + 1));
                                          ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
LP/lp_genfunc.c:3388:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip_inf->c_val = (double *)malloc(DSIZE*alloc_size);
                                             ˜^˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3389:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip_inf->c_sense = (char *)malloc(CSIZE*alloc_num);
                                             ˜^˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3390:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip_inf->c_rhs = (double *)malloc(DSIZE*alloc_num);           
                                             ˜^˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3391:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip_inf->c_tmp = (int *)malloc(ISIZE*alloc_num);
                                          ˜^˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3399:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_inf->c_ind = (int *)realloc(mip_inf->c_ind, ISIZE*alloc_size);            
                                                              ˜^˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3400:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_inf->c_val = (double *)realloc(mip_inf->c_val, DSIZE*alloc_size);
                                                                 ˜^˜˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3405:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_inf->c_beg = (int *)realloc(mip_inf->c_beg, ISIZE*(alloc_num + 1));
                                                              ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
LP/lp_genfunc.c:3406:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_inf->c_sense = (char *)realloc(mip_inf->c_sense, CSIZE*alloc_num);
                                                                   ˜^˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3407:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_inf->c_rhs = (double *)realloc(mip_inf->c_rhs, DSIZE*alloc_num);
                                                                 ˜^˜˜˜˜˜˜˜˜
LP/lp_genfunc.c:3408:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip_inf->c_tmp = (int *)realloc(mip_inf->c_tmp, ISIZE*alloc_num);
                                                              ˜^˜˜˜˜˜˜˜˜
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_genfunc.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
84 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_proccomm.lo `test -f 'LP/lp_proccomm.c' || echo './'`LP/lp_proccomm.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_proccomm.c  -fno-common -DPIC -o libSym_la-lp_proccomm.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_proccomm.c:115:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         REALLOC(p->waiting_rows, waiting_row *, p->waiting_rows_size,
         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
LP/lp_proccomm.c:275:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      desc->cuts = (cut_data **) malloc(desc->cutind.size*sizeof(cut_data *));
                                        ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:297:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      desc->desc = (char *) malloc(desc->desc_size * CSIZE);
                                   ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
LP/lp_proccomm.c:351:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                   new_row_num * sizeof(waiting_row *));
                   ^˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_proccomm.c:387:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      ptimeout = timeout ? (&tvtimeout) : NULL;
               ˜ ^˜˜˜˜˜˜
LP/lp_proccomm.c:428:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
         ptimeout = timeout ? (&tvtimeout) : NULL;
                  ˜ ^˜˜˜˜˜˜
LP/lp_proccomm.c:555:31: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
   n->cuts_tried = p->lp_stat.node_cuts_tried;
                 ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:556:32: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
   n->cuts_forced = p->lp_stat.node_cuts_forced; 
                  ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:592:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            n->sol_ind = (int *) malloc (ISIZE * n->sol_size);
                                               ˜ ˜˜˜^˜˜˜˜˜˜˜
LP/lp_proccomm.c:593:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            n->sol = (double *) malloc (DSIZE * n->sol_size);
                                              ˜ ˜˜˜^˜˜˜˜˜˜˜
LP/lp_proccomm.c:594:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(n->sol, values, DSIZE*n->sol_size);
                                        ˜˜˜˜^˜˜˜˜˜˜˜
LP/lp_proccomm.c:595:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(n->sol_ind, indices, ISIZE*n->sol_size);
                                             ˜˜˜˜^˜˜˜˜˜˜˜
LP/lp_proccomm.c:677:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_ARRAY_DESC(new_tm_desc->uind, new_lp_desc->uind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:148:38: note: expanded from macro 'COPY_ARRAY_DESC'
   newad.list = (int *) malloc(oldad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:677:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_ARRAY_DESC(new_tm_desc->uind, new_lp_desc->uind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:149:57: note: expanded from macro 'COPY_ARRAY_DESC'
   memcpy((char *)newad.list, (char *)oldad.list, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:678:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_ARRAY_DESC(new_tm_desc->cutind, new_lp_desc->cutind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:148:38: note: expanded from macro 'COPY_ARRAY_DESC'
   newad.list = (int *) malloc(oldad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:678:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_ARRAY_DESC(new_tm_desc->cutind, new_lp_desc->cutind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:149:57: note: expanded from macro 'COPY_ARRAY_DESC'
   memcpy((char *)newad.list, (char *)oldad.list, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:681:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_ARRAY_DESC(new_tm_desc->not_fixed, new_lp_desc->not_fixed);
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:148:38: note: expanded from macro 'COPY_ARRAY_DESC'
   newad.list = (int *) malloc(oldad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:681:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_ARRAY_DESC(new_tm_desc->not_fixed, new_lp_desc->not_fixed);
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:149:57: note: expanded from macro 'COPY_ARRAY_DESC'
   memcpy((char *)newad.list, (char *)oldad.list, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:683:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.basevars, new_lp_desc->basis.basevars);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:683:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.basevars, new_lp_desc->basis.basevars);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:684:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.extravars, new_lp_desc->basis.extravars);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:684:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.extravars, new_lp_desc->basis.extravars);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:685:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.baserows, new_lp_desc->basis.baserows);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:685:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.baserows, new_lp_desc->basis.baserows);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:686:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.extrarows, new_lp_desc->basis.extrarows);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:686:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         COPY_STAT(new_tm_desc->basis.extrarows, new_lp_desc->basis.extrarows);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:691:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         MAKE_TM_ARRAY_DESC(new_tm_desc->uind, new_lp_desc->uind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:496:38: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
   newad.list = (int *) malloc(newad.size*ISIZE);                           \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:691:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         MAKE_TM_ARRAY_DESC(new_tm_desc->uind, new_lp_desc->uind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:498:57: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
      memcpy((char *)newad.list, lp_data->tmp.i1, newad.size*ISIZE);        \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:691:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         MAKE_TM_ARRAY_DESC(new_tm_desc->uind, new_lp_desc->uind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:500:52: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
      memcpy((char *)newad.list, oldad.list, newad.size*ISIZE);             \
                                             ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:697:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            MAKE_TM_ARRAY_DESC(new_tm_desc->not_fixed, new_lp_desc->not_fixed);
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:496:38: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
   newad.list = (int *) malloc(newad.size*ISIZE);                           \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:697:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            MAKE_TM_ARRAY_DESC(new_tm_desc->not_fixed, new_lp_desc->not_fixed);
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:498:57: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
      memcpy((char *)newad.list, lp_data->tmp.i1, newad.size*ISIZE);        \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:697:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            MAKE_TM_ARRAY_DESC(new_tm_desc->not_fixed, new_lp_desc->not_fixed);
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:500:52: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
      memcpy((char *)newad.list, oldad.list, newad.size*ISIZE);             \
                                             ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:702:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         MAKE_TM_ARRAY_DESC(new_tm_desc->cutind, new_lp_desc->cutind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:496:38: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
   newad.list = (int *) malloc(newad.size*ISIZE);                           \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:702:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         MAKE_TM_ARRAY_DESC(new_tm_desc->cutind, new_lp_desc->cutind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:498:57: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
      memcpy((char *)newad.list, lp_data->tmp.i1, newad.size*ISIZE);        \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:702:3: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         MAKE_TM_ARRAY_DESC(new_tm_desc->cutind, new_lp_desc->cutind);
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:500:52: note: expanded from macro 'MAKE_TM_ARRAY_DESC'
      memcpy((char *)newad.list, oldad.list, newad.size*ISIZE);             \
                                             ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:708:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.basevars,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:708:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.basevars,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:710:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.extravars,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:710:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.extravars,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:712:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.baserows,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:712:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.baserows,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:714:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.extrarows,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:141:38: note: expanded from macro 'COPY_STAT'
   newad.stat = (int *) malloc(newad.size*ISIZE);                          \
                               ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:714:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            COPY_STAT(new_tm_desc->basis.extrarows,
            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:142:57: note: expanded from macro 'COPY_STAT'
   memcpy((char *)newad.stat, (char *)oldad.stat, oldad.size*ISIZE);       \
                                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:730:16: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                new_lp_desc->desc_size);
                ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:772:8: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                 tm->nextphase_cand_size, tm->nextphase_candnum+1, BB_BUNCH);
                 ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
LP/lp_proccomm.c:907:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               int *not_fixed = (int *) malloc((usize + nsize) * ISIZE);
                                                ˜˜˜˜˜˜^˜˜˜˜˜˜  ˜
LP/lp_proccomm.c:921:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(not_fixed+k, ulist+i, (usize-i)*ISIZE);
                                                ˜˜˜˜˜^˜ ˜
LP/lp_proccomm.c:923:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(not_fixed+k, nlist+j, (nsize-j)*ISIZE);
                                                ˜˜˜˜˜^˜ ˜
LP/lp_proccomm.c:1155:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(iadd + k, newlist + j, (newsize - j) * ISIZE);
                                           ˜˜˜˜˜˜˜˜^˜˜  ˜
LP/lp_proccomm.c:1158:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(desc.list + desc.added, isub, l * ISIZE);
                                                 ^ ˜
LP/lp_proccomm.c:1160:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(desc.list+desc.added+l, origlist+i, (origsize-i) * ISIZE);
                                                        ˜˜˜˜˜˜˜˜^˜  ˜
LP/lp_proccomm.c:1224:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.baserows);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1177:31: note: expanded from macro 'PACK_BASE_DIFF'
         which.list = (int *) malloc(size*ISIZE);                            \
                                     ^˜˜˜˜
LP/lp_proccomm.c:1224:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.baserows);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1178:31: note: expanded from macro 'PACK_BASE_DIFF'
         which.stat = (int *) malloc(size*ISIZE);                            \
                                     ^˜˜˜˜
LP/lp_proccomm.c:1224:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.baserows);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1179:44: note: expanded from macro 'PACK_BASE_DIFF'
         memcpy((char *)which.list, (char *)itmp, size*ISIZE);               \
                                                  ^˜˜˜˜
LP/lp_proccomm.c:1224:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.baserows);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1180:56: note: expanded from macro 'PACK_BASE_DIFF'
         memcpy((char *)which.stat, (char *)(itmp+orig_size), size*ISIZE);   \
                                                              ^˜˜˜˜
LP/lp_proccomm.c:1224:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.baserows);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1183:41: note: expanded from macro 'PACK_BASE_DIFF'
      which.stat = (int *) malloc(which.size*ISIZE);                         \
                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1224:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.baserows);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1184:67: note: expanded from macro 'PACK_BASE_DIFF'
      memcpy((char *)which.stat,(char *)newdesc->which.stat,which.size*ISIZE);\
                                                            ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1234:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, cutind, basis.extrarows, cutind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1194:32: note: expanded from macro 'PACK_EXTRA_DIFF'
         which2.list = (int *) malloc(size*ISIZE);                           \
                                      ^˜˜˜˜
LP/lp_proccomm.c:1234:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, cutind, basis.extrarows, cutind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1195:32: note: expanded from macro 'PACK_EXTRA_DIFF'
         which2.stat = (int *) malloc(size*ISIZE);                           \
                                      ^˜˜˜˜
LP/lp_proccomm.c:1234:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, cutind, basis.extrarows, cutind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1196:45: note: expanded from macro 'PACK_EXTRA_DIFF'
         memcpy((char *)which2.list, (char *)itmp, size*ISIZE);              \
                                                   ^˜˜˜˜
LP/lp_proccomm.c:1234:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, cutind, basis.extrarows, cutind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1197:57: note: expanded from macro 'PACK_EXTRA_DIFF'
         memcpy((char *)which2.stat, (char *)(itmp+orig_size), size*ISIZE);  \
                                                               ^˜˜˜˜
LP/lp_proccomm.c:1234:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, cutind, basis.extrarows, cutind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1200:43: note: expanded from macro 'PACK_EXTRA_DIFF'
      which2.stat = (int *) malloc(which2.size*ISIZE);                       \
                                   ˜˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1234:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, cutind, basis.extrarows, cutind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1201:56: note: expanded from macro 'PACK_EXTRA_DIFF'
      memcpy(which2.stat, newdesc->which2.stat, which2.size*ISIZE);          \
                                                ˜˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1237:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.basevars);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1177:31: note: expanded from macro 'PACK_BASE_DIFF'
         which.list = (int *) malloc(size*ISIZE);                            \
                                     ^˜˜˜˜
LP/lp_proccomm.c:1237:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.basevars);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1178:31: note: expanded from macro 'PACK_BASE_DIFF'
         which.stat = (int *) malloc(size*ISIZE);                            \
                                     ^˜˜˜˜
LP/lp_proccomm.c:1237:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.basevars);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1179:44: note: expanded from macro 'PACK_BASE_DIFF'
         memcpy((char *)which.list, (char *)itmp, size*ISIZE);               \
                                                  ^˜˜˜˜
LP/lp_proccomm.c:1237:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.basevars);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1180:56: note: expanded from macro 'PACK_BASE_DIFF'
         memcpy((char *)which.stat, (char *)(itmp+orig_size), size*ISIZE);   \
                                                              ^˜˜˜˜
LP/lp_proccomm.c:1237:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.basevars);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1183:41: note: expanded from macro 'PACK_BASE_DIFF'
      which.stat = (int *) malloc(which.size*ISIZE);                         \
                                  ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1237:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_BASE_DIFF(newnode, oldnode, basis.basevars);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1184:67: note: expanded from macro 'PACK_BASE_DIFF'
      memcpy((char *)which.stat,(char *)newdesc->which.stat,which.size*ISIZE);\
                                                            ˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1248:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, uind, basis.extravars, uind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1194:32: note: expanded from macro 'PACK_EXTRA_DIFF'
         which2.list = (int *) malloc(size*ISIZE);                           \
                                      ^˜˜˜˜
LP/lp_proccomm.c:1248:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, uind, basis.extravars, uind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1195:32: note: expanded from macro 'PACK_EXTRA_DIFF'
         which2.stat = (int *) malloc(size*ISIZE);                           \
                                      ^˜˜˜˜
LP/lp_proccomm.c:1248:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, uind, basis.extravars, uind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1196:45: note: expanded from macro 'PACK_EXTRA_DIFF'
         memcpy((char *)which2.list, (char *)itmp, size*ISIZE);              \
                                                   ^˜˜˜˜
LP/lp_proccomm.c:1248:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, uind, basis.extravars, uind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1197:57: note: expanded from macro 'PACK_EXTRA_DIFF'
         memcpy((char *)which2.stat, (char *)(itmp+orig_size), size*ISIZE);  \
                                                               ^˜˜˜˜
LP/lp_proccomm.c:1248:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, uind, basis.extravars, uind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1200:43: note: expanded from macro 'PACK_EXTRA_DIFF'
      which2.stat = (int *) malloc(which2.size*ISIZE);                       \
                                   ˜˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1248:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   PACK_EXTRA_DIFF(newnode, oldnode, uind, basis.extravars, uind_type);
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1201:56: note: expanded from macro 'PACK_EXTRA_DIFF'
      memcpy(which2.stat, newdesc->which2.stat, which2.size*ISIZE);          \
                                                ˜˜˜˜˜˜˜^˜˜˜˜
LP/lp_proccomm.c:1393:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy((char *)(modlist+l), (char *)(newlist+j), (newsize-j)*ISIZE);
                                                           ˜˜˜˜˜˜˜^˜ ˜
LP/lp_proccomm.c:1394:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy((char *)(modstat+l), (char *)(newstat+j), (newsize-j)*ISIZE);
                                                           ˜˜˜˜˜˜˜^˜ ˜
LP/lp_proccomm.c:1435:19: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
   char dive = p->dive, olddive = p->dive;
        ˜˜˜˜   ˜˜˜^˜˜˜
LP/lp_proccomm.c:1435:38: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
   char dive = p->dive, olddive = p->dive;
                        ˜˜˜˜˜˜˜   ˜˜˜^˜˜˜
LP/lp_proccomm.c:1474:11: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
   dive = generate_children(tm, node, bobj, can->objval, can->feasible,
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_proccomm.c:1669:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      REALLOC(cp->cuts_to_add, cut_data *, cp->cuts_to_add_size,
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
LP/lp_proccomm.c:1680:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  (char *) malloc (extrarows[i].cut->size * sizeof(char));
                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_proccomm.c:1683:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                      extrarows[i].cut->size*sizeof(char));
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_proccomm.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
120 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_wrapper.lo `test -f 'LP/lp_wrapper.c' || echo './'`LP/lp_wrapper.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_wrapper.c  -fno-common -DPIC -o libSym_la-lp_wrapper.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_wrapper.c:86:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      p->base.userind = (int *) malloc(p->base.varnum * ISIZE);
                                       ˜˜˜˜˜˜˜˜^˜˜˜˜˜ ˜
LP/lp_wrapper.c:100:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->matbeg = (int *) malloc(ISIZE * (mip->n + 1));
                                         ˜  ˜˜˜˜˜˜˜^˜˜
LP/lp_wrapper.c:101:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->matind = (int *)    malloc(ISIZE * mip->nz);
                                            ˜ ˜˜˜˜˜^˜
LP/lp_wrapper.c:102:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->matval = (double *) malloc(DSIZE * mip->nz);
                                            ˜ ˜˜˜˜˜^˜
LP/lp_wrapper.c:103:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->obj    = (double *) malloc(DSIZE * mip->n);
                                            ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:105:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip->obj1    = (double *) malloc(DSIZE * mip->n);
                                                ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:106:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip->obj2    = (double *) malloc(DSIZE * mip->n);
                                                ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:108:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->rhs    = (double *) malloc(DSIZE * mip->m);
                                            ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:109:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->sense  = (char *)   malloc(CSIZE * mip->m);
                                            ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:110:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->rngval = (double *) malloc(DSIZE * mip->m);
                                            ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:111:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->ub     = (double *) malloc(DSIZE * mip->n);
                                            ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:112:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      mip->lb     = (double *) malloc(DSIZE * mip->n);
                                            ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:113:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      mip->is_int = (char *)   calloc(CSIZE, mip->n);
                               ˜˜˜˜˜˜        ˜˜˜˜˜^
LP/lp_wrapper.c:132:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         mip->colname = (char **) malloc(sizeof(char *) * mip->n);   
                                                        ˜ ˜˜˜˜˜^
LP/lp_wrapper.c:230:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             lp_data->not_fixed_num * ISIZE);
             ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_wrapper.c:236:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            realloc(lp_data->vars, lp_data->n * sizeof(var_desc *));
                                   ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:260:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   userind = (int *) malloc(lp_data->n * ISIZE);
                            ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:304:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->matbeg  = (int *) malloc((lp_data_mip->n + 1) * ISIZE);
                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜  ˜
LP/lp_wrapper.c:305:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->matind  = (int *) malloc((lp_data_mip->nz) * ISIZE);
                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜  ˜
LP/lp_wrapper.c:306:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->matval  = (double *) malloc((lp_data_mip->nz) * DSIZE);
                                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜  ˜
LP/lp_wrapper.c:307:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->obj     = (double *) malloc(lp_data_mip->n * DSIZE);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:308:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->ub      = (double *) malloc(lp_data_mip->n * DSIZE);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:309:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         lp_data_mip->lb      = (double *) calloc(lp_data_mip->n, DSIZE); 
                                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:310:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->rhs     = (double *) malloc(lp_data_mip->m * DSIZE);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:311:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data_mip->sense   = (char *)   malloc(lp_data_mip->m * CSIZE);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:312:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         lp_data_mip->rngval  = (double *) calloc(lp_data_mip->m, DSIZE);
                                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:313:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         lp_data_mip->is_int  = (char *)   calloc(lp_data_mip->n, CSIZE);
                                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:460:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         realloc(lp_data->vars, lp_data->maxn * sizeof(var_desc *));
                                ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_wrapper.c:559:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->pcost_down = (double *)calloc(p->mip->n, DSIZE);
                                ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:560:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->pcost_up = (double *)calloc(p->mip->n, DSIZE);
                              ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:561:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->br_rel_down = (int *)calloc(p->mip->n, ISIZE);
                              ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:562:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->br_rel_up = (int *)calloc(p->mip->n, ISIZE);
                            ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:563:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->br_rel_cand_list = (int *)calloc(p->mip->n, ISIZE);
                                   ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:564:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      p->br_rel_down_min_level = (int *)malloc(p->mip->n* ISIZE);
                                               ˜˜˜˜˜˜˜˜^˜
LP/lp_wrapper.c:565:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      p->br_rel_up_min_level = (int *)malloc(p->mip->n* ISIZE);      
                                             ˜˜˜˜˜˜˜˜^˜
LP/lp_wrapper.c:566:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->br_inf_down = (int *)calloc(p->mip->n, ISIZE);
                              ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:567:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      p->br_inf_up = (int *)calloc(p->mip->n, ISIZE);      
                            ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:594:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     p->var_rank = (double *)calloc(p->mip->n, DSIZE);
                             ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:608:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     p->root_lp = (double *)calloc(p->mip->n+1, DSIZE);
                            ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
LP/lp_wrapper.c:683:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
               cut->coef = (char *) malloc(cut->size);
                                    ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜
LP/lp_wrapper.c:685:14: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                      cut->size);
                      ˜˜˜˜˜^˜˜˜
LP/lp_wrapper.c:780:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.basevars.stat, desc->basis.basevars.size *ISIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_wrapper.c:782:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.extravars.stat, desc->basis.extravars.size *ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_wrapper.c:791:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.baserows.stat, desc->basis.baserows.size *ISIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_wrapper.c:793:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                desc->basis.extrarows.stat, desc->basis.extrarows.size *ISIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_wrapper.c:856:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(col_sol, heur_solution, DSIZE*lp_data->n);
                                             ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:910:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memcpy(p->root_lp, lp_data->x, DSIZE*n);
                                         ˜^
LP/lp_wrapper.c:947:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(col_sol, 0, DSIZE*lp_data->n);
                                ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:957:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(col_sol, heur_solution, DSIZE*lp_data->n);
                                                ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:973:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(col_sol, heur_solution, DSIZE*lp_data->n);
                                                ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:990:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(col_sol, heur_solution, DSIZE*lp_data->n);
                                              ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:1017:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(col_sol, heur_solution, DSIZE*lp_data->n);
                                                ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:1053:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(col_sol, heur_solution, DSIZE*lp_data->n);       
                                              ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:1078:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(col_sol, heur_solution, DSIZE*lp_data->n); //no need -- 
                                              ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:1096:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(col_sol, p->lp_data->x, DSIZE*lp_data->n);
                                             ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:1116:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(col_sol, heur_solution, DSIZE*lp_data->n);
                                                ˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:1200:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            p->best_sol.xind = (int *) malloc(cnt*ISIZE);
                                              ^˜˜˜
LP/lp_wrapper.c:1201:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            p->best_sol.xval = (double *) malloc(cnt*DSIZE);
                                                 ^˜˜˜
LP/lp_wrapper.c:1202:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy((char *)p->best_sol.xind, (char *)indices, cnt*ISIZE);
                                                              ^˜˜˜
LP/lp_wrapper.c:1203:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy((char *)p->best_sol.xval, (char *)values, cnt*DSIZE);
                                                             ^˜˜˜
LP/lp_wrapper.c:1547:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      cut_data **regen_cuts = (cut_data **) malloc(*cand_num*sizeof(cut_data));
                                                   ^˜˜˜˜˜˜˜˜˜
LP/lp_wrapper.c:2078:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
          memcmp(rcut1->coef, rcut2->coef, rcut1->size))
          ˜˜˜˜˜˜                           ˜˜˜˜˜˜˜^˜˜˜
LP/lp_wrapper.c:2138:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      row_list = (waiting_row **) calloc (cut_num, sizeof(waiting_row *));
                                  ˜˜˜˜˜˜  ^˜˜˜˜˜˜
LP/lp_wrapper.c:2152:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         matind = (int *) (cuts[i]->coef + (nzcnt + 1)*DSIZE);
                                            ˜˜˜˜˜˜^˜˜ ˜
LP/lp_wrapper.c:2154:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (double *) malloc(nzcnt * DSIZE);
                              ^˜˜˜˜ ˜
LP/lp_wrapper.c:2156:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc(nzcnt * ISIZE);
                           ^˜˜˜˜ ˜
LP/lp_wrapper.c:2158:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(row_matind, matind, nzcnt*ISIZE);
                                       ^˜˜˜˜˜
LP/lp_wrapper.c:2159:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(row_matval, matval, nzcnt*DSIZE);
                                       ^˜˜˜˜˜
LP/lp_wrapper.c:2179:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc (lp_data->n * ISIZE);
                            ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:2181:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (double *) malloc (lp_data->n * DSIZE);
                               ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:2200:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (int *) malloc (lp_data->n * ISIZE);
                            ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:2202:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (double *) malloc (lp_data->n * DSIZE);
                               ˜˜˜˜˜˜˜˜˜^ ˜
LP/lp_wrapper.c:2265:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            row_list = (waiting_row **) realloc(row_list, *new_row_num +
                                        ˜˜˜˜˜˜˜           ˜˜˜˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:2384:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(status, lpstatus, CSIZE*p->lp_data->n);
                                 ˜˜˜˜˜˜˜˜˜˜˜˜˜^
LP/lp_wrapper.c:2693:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   memset(delete_rows, 0, wrow_num);
   ˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜
LP/lp_wrapper.c:2949:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  p->best_sol.xind = (int *) malloc(length*ISIZE);
                                    ^˜˜˜˜˜˜
LP/lp_wrapper.c:2950:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  p->best_sol.xval = (double *) malloc(length*DSIZE);
                                       ^˜˜˜˜˜˜
LP/lp_wrapper.c:2951:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy((char *)p->best_sol.xind, (char *)indices, length * ISIZE);
                                                    ^˜˜˜˜˜ ˜
LP/lp_wrapper.c:2952:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy((char *)p->best_sol.xval, (char *)values, length * DSIZE);
                                                   ^˜˜˜˜˜ ˜
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_wrapper.c:26:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
116 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_free.lo `test -f 'LP/lp_free.c' || echo './'`LP/lp_free.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_free.c  -fno-common -DPIC -o libSym_la-lp_free.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_free.c:16:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
37 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_sp.lo `test -f 'LP/lp_sp.c' || echo './'`LP/lp_sp.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_sp.c  -fno-common -DPIC -o libSym_la-lp_sp.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_sp.c:53:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   sol->xind = (int *) malloc(ISIZE*cnt);
                                   ˜^˜˜
LP/lp_sp.c:54:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(sol->xind,indices,ISIZE*cnt);
                                 ˜^˜˜
LP/lp_sp.c:55:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   sol->xval = (double *) malloc(DSIZE*cnt);
                                      ˜^˜˜
LP/lp_sp.c:56:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(sol->xval,values,DSIZE*cnt);
                                ˜^˜˜
LP/lp_sp.c:107:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   sp->solutions = (sp_solution **) malloc(sp->max_solutions*sizeof(sp_solution*));
                                           ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_sp.c:20:
In file included from ../include/sym_primal_heuristics.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
42 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_heuristics.lo `test -f 'LP/lp_heuristics.c' || echo './'`LP/lp_heuristics.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_heuristics.c  -fno-common -DPIC -o libSym_la-lp_heuristics.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_heuristics.c:125:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   fp_data->mip_obj       = (double *)malloc(n*DSIZE);
                                             ^˜
LP/lp_heuristics.c:134:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      fp_data->sos_row_filled = (char *)malloc(p->mip->m*CSIZE);
                                               ˜˜˜˜˜˜˜˜^˜
LP/lp_heuristics.c:138:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(fp_data->mip_obj,mip_obj,n*DSIZE);
                                   ^˜
LP/lp_heuristics.c:213:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(betterSolution, x_ip, n*DSIZE);
                                         ^˜
LP/lp_heuristics.c:216:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(betterSolution, x_ip, n*DSIZE);
                                         ^˜
LP/lp_heuristics.c:523:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   outrhsind = (int *)calloc(m, ISIZE);
                      ˜˜˜˜˜˜ ^
LP/lp_heuristics.c:551:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   fp_data->fp_vars         = (FPvars **) malloc(sizeof(FPvars *)*n);
                                                                 ˜^
LP/lp_heuristics.c:552:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   fp_data->x_ip            = (double *) calloc(n,DSIZE);
                                         ˜˜˜˜˜˜ ^
LP/lp_heuristics.c:553:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   fp_data->x_lp            = (double *) calloc(n,DSIZE);
                                         ˜˜˜˜˜˜ ^
LP/lp_heuristics.c:554:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   fp_data->index_list      = (int *)    calloc(n,DSIZE);
                                         ˜˜˜˜˜˜ ^
LP/lp_heuristics.c:555:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   fp_data->x_bar_ind       = (int **)   calloc(p->par.fp_max_cycles,
                                         ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:557:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   fp_data->x_bar_val       = (double **)calloc(p->par.fp_max_cycles,
                                         ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:559:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   fp_data->x_bar_len       = (int *)    calloc(p->par.fp_max_cycles,ISIZE);
                                         ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:560:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   fp_data->alpha_p         = (double *) malloc(p->par.fp_max_cycles*DSIZE);
                                                ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:591:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   fp_data->obj     = (double *)malloc(fp_data->n*DSIZE);
                                       ˜˜˜˜˜˜˜˜˜^˜
LP/lp_heuristics.c:592:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   new_lp_data->x   = (double *)calloc(fp_data->n,DSIZE);
                                ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^
LP/lp_heuristics.c:593:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(fp_data->x_lp,p->lp_data->x,DSIZE*n);
                                           ˜^
LP/lp_heuristics.c:629:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_lp_data->tmp.d = (double *)malloc(DSIZE*(n+2)); /* +2 for add_rows */
                                              ˜ ˜^˜
LP/lp_heuristics.c:630:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   new_lp_data->tmp.i1 = (int *)malloc(ISIZE*n);
                                            ˜^
LP/lp_heuristics.c:691:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset ((char *)(objcoeff),0,DSIZE*n);
                                     ˜^
LP/lp_heuristics.c:758:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(x_lp,lp_data_x,DSIZE*n0);
                              ˜^˜
LP/lp_heuristics.c:793:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   rmatind = (int *) malloc(nz*ISIZE);
                            ^˜˜
LP/lp_heuristics.c:794:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   rmatval = (double *) malloc(nz*DSIZE);
                               ^˜˜
LP/lp_heuristics.c:838:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(fp_data->sos_row_filled, 0, CSIZE*p->mip->m);
                                              ˜˜˜˜˜˜˜˜˜^
LP/lp_heuristics.c:967:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      fp_data->x_bar_ind[fp_iter] = (int *)malloc(ISIZE*cnt);
                                                       ˜^˜˜
LP/lp_heuristics.c:968:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      fp_data->x_bar_val[fp_iter] = (double *)malloc(DSIZE*cnt);
                                                          ˜^˜˜
LP/lp_heuristics.c:970:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(fp_data->x_bar_ind[fp_iter],tind,ISIZE*cnt);
                                                   ˜^˜˜
LP/lp_heuristics.c:971:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(fp_data->x_bar_val[fp_iter],tx,DSIZE*cnt);
                                                 ˜^˜˜
LP/lp_heuristics.c:1327:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(frac_ind, init_frac_ind, ISIZE*frac_ip_cnt);  
                                       ˜^˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:1541:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                    memcpy(colSolution, betterSolution, DSIZE*n);
                                                             ˜^
LP/lp_heuristics.c:1567:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(betterSolution, diving_lp->x, DSIZE*n);
                                                        ˜^
LP/lp_heuristics.c:1659:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
              memcpy(colSolution, betterSolution, DSIZE*n);
                                                       ˜^
LP/lp_heuristics.c:1676:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memcpy(frac_ind, init_frac_ind, ISIZE*frac_ip_cnt);
                                             ˜^˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:1904:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           memset(feas_sol, 0, DSIZE*n);
                                    ˜^
LP/lp_heuristics.c:2115:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      col_lengths=(p->mip->col_lengths = (int *)calloc(n,ISIZE));
                                                ˜˜˜˜˜˜ ^
LP/lp_heuristics.c:2116:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      row_matval = (p->mip->row_matval = (double *)malloc(nz*DSIZE)); 
                                                          ^˜˜
LP/lp_heuristics.c:2117:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      row_matind = (p->mip->row_matind = (int *)malloc(nz*ISIZE)); 
                                                       ^˜˜
LP/lp_heuristics.c:2118:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      row_matbeg = (p->mip->row_matbeg = (int *)malloc((m+1)*ISIZE));
                                                        ˜^˜ ˜
LP/lp_heuristics.c:2119:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      row_lengths = (p->mip->row_lengths = (int *)calloc(m,ISIZE));
                                                  ˜˜˜˜˜˜ ^
LP/lp_heuristics.c:2500:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   lp_data->tmp1.i1 = (int *)malloc(ISIZE*new_size);
                                         ˜^˜˜˜˜˜˜˜
LP/lp_heuristics.c:2501:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   lp_data->tmp1.d = (double *)malloc(DSIZE*new_size);
                                           ˜^˜˜˜˜˜˜˜
LP/lp_heuristics.c:2502:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   lp_data->tmp1.c = (char *)malloc(CSIZE*new_size);
                                         ˜^˜˜˜˜˜˜˜
LP/lp_heuristics.c:2560:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      columnLength=(p->mip->col_lengths = (int *)calloc(numberColumns,ISIZE));
                                                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2561:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      elementByRow = (p->mip->row_matval = (double *)malloc(nz*DSIZE)); 
                                                            ^˜˜
LP/lp_heuristics.c:2562:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      column = (p->mip->row_matind = (int *)malloc(nz*ISIZE)); 
                                                   ^˜˜
LP/lp_heuristics.c:2563:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rowStart = (p->mip->row_matbeg = (int *)malloc((numberRows+1)*ISIZE));
                                                      ˜˜˜˜˜˜˜˜˜˜^˜ ˜
LP/lp_heuristics.c:2564:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rowLength = (p->mip->row_lengths = (int *)calloc(numberRows,ISIZE));
                                                ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2624:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(newSolution,solution,numberColumns*sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2627:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memset(rowActivity,0,numberRows*sizeof(double));
                        ^˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2631:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (value) {
      ˜˜  ^˜˜˜˜
LP/lp_heuristics.c:2690:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
      if (thisInfeasibility) {
      ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2772:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
   if (!penalty) {
       ˜^˜˜˜˜˜˜
LP/lp_heuristics.c:2798:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            while (move) {
            ˜˜˜˜˜  ^˜˜˜
LP/lp_heuristics.c:2835:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(rowActivity,0,numberRows*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2839:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
            if (value) {
            ˜˜  ^˜˜˜˜
LP/lp_heuristics.c:2860:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(betterSolution, newSolution, numberColumns*DSIZE);
                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2914:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      columnLength=(p->mip->col_lengths = (int *)calloc(numberColumns,ISIZE));
                                                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2915:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      elementByRow = (p->mip->row_matval = (double *)malloc(nz*DSIZE)); 
                                                            ^˜˜
LP/lp_heuristics.c:2916:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      column = (p->mip->row_matind = (int *)malloc(nz*ISIZE)); 
                                                   ^˜˜
LP/lp_heuristics.c:2917:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      rowStart = (p->mip->row_matbeg = (int *)malloc((numberRows+1)*ISIZE));
                                                      ˜˜˜˜˜˜˜˜˜˜^˜ ˜
LP/lp_heuristics.c:2918:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      rowLength = (p->mip->row_lengths = (int *)calloc(numberRows,ISIZE));
                                                ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:2980:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(lb, p->mip->lb, DSIZE*n);
                                ˜^
LP/lp_heuristics.c:2981:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(ub, p->mip->ub, DSIZE*n);
                                ˜^
LP/lp_heuristics.c:3068:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(newSolution,solution,numberColumns*sizeof(double));
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:3076:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  memset(mark,0,numberRows);
  ˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:3120:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(rowActivity,0,numberRows*sizeof(double));
                       ^˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:3125:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
    if (value) {
    ˜˜  ^˜˜˜˜
LP/lp_heuristics.c:3361:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rowActivity,0,numberRows*sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:3367:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (value) {
        ˜˜  ^˜˜˜˜
LP/lp_heuristics.c:3406:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(betterSolution,newSolution,numberColumns*sizeof(double));
                                           ^˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_heuristics.c:3445:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(colSolution, betterSolution, DSIZE*p->lp_data->n);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^
LP/lp_heuristics.c:3512:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *obj     = (double *) malloc(n * DSIZE);
                                       ^ ˜
LP/lp_heuristics.c:3513:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *ub      = (double *) malloc(n * DSIZE);
                                       ^ ˜
LP/lp_heuristics.c:3514:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *lb      = (double *) malloc(n* DSIZE);
                                       ^˜
LP/lp_heuristics.c:3515:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *rhs     = (double *) malloc((m + 1) * DSIZE);
                                        ˜˜^˜˜  ˜
LP/lp_heuristics.c:3516:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   char *is_int  = (char *)   malloc(n* CSIZE);
                                     ^˜
LP/lp_heuristics.c:3517:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *rngval  = (double *) malloc((m + 1)* DSIZE);
                                        ˜˜^˜˜ ˜
LP/lp_heuristics.c:3518:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   char *sense   = (char *)   malloc((m + 1) * CSIZE);
                                      ˜˜^˜˜  ˜
LP/lp_heuristics.c:3520:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *matbeg  = (int *) malloc((n + 1) * ISIZE);
                                  ˜˜^˜˜  ˜
LP/lp_heuristics.c:3521:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *matind  = (int *) malloc((nz + n) * ISIZE); 
                                  ˜˜˜^˜˜  ˜
LP/lp_heuristics.c:3522:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *matval  = (double *) malloc((nz + n) * DSIZE);
                                        ˜˜˜^˜˜  ˜
LP/lp_heuristics.c:3913:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        memset(feas_sol, 0, DSIZE*n);
                                 ˜^
LP/lp_heuristics.c:4875:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(is_row_added, 0, CSIZE*m);
                                   ˜^
LP/lp_heuristics.c:4979:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *obj    = (double *) malloc(DSIZE * n);
                                            ˜ ^
LP/lp_heuristics.c:4980:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *rhs    = (double *) malloc(DSIZE * m);
                                            ˜ ^
LP/lp_heuristics.c:4981:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   char *sense  = (char *)   malloc(CSIZE * m);
                                          ˜ ^
LP/lp_heuristics.c:4982:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *rngval = (double *) malloc(DSIZE * m);
                                            ˜ ^
LP/lp_heuristics.c:4983:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *ub     = (double *) malloc(DSIZE * n);
                                            ˜ ^
LP/lp_heuristics.c:4984:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *lb     = (double *) malloc(DSIZE * n);
                                            ˜ ^
LP/lp_heuristics.c:4985:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   char *is_int  = (char *)   malloc(CSIZE * n);
                                           ˜ ^
LP/lp_heuristics.c:4987:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *matbeg = (int *) malloc(ISIZE * (n + 1));
                                      ˜  ˜˜^˜˜
LP/lp_heuristics.c:4988:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   double *matval = (double *) malloc(DSIZE*nz);
                                           ˜^˜
LP/lp_heuristics.c:4989:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   int *matind = (int *)    malloc(ISIZE*nz);
                                        ˜^˜
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_heuristics.c:22:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
130 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-lp_branch.lo `test -f 'LP/lp_branch.c' || echo './'`LP/lp_branch.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c LP/lp_branch.c  -fno-common -DPIC -o libSym_la-lp_branch.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_branch.c:54:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   wrows = (waiting_row **) malloc(cand_num * sizeof(waiting_row *));
                                   ^˜˜˜˜˜˜˜ ˜
LP/lp_branch.c:268:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->tmp2.i1 = (int *)malloc (tmp_size*ISIZE);
                                           ^˜˜˜˜˜˜˜˜
LP/lp_branch.c:269:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->tmp2.d = (double *)malloc ((tmp_size + lp_data->n)*DSIZE);
                                              ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_branch.c:270:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         lp_data->tmp2.c = (char *)malloc (tmp_size*CSIZE);
                                           ^˜˜˜˜˜˜˜˜
LP/lp_branch.c:329:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               memcpy(p->br_rel_cand_list, new_cand_list, ISIZE*cand_num);
                                                               ˜^˜˜˜˜˜˜˜
LP/lp_branch.c:335:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            up_violation_cnt = (int *)calloc (lp_data->n,ISIZE);
                                      ˜˜˜˜˜˜  ˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:336:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            down_violation_cnt = (int *)calloc (lp_data->n,ISIZE);
                                        ˜˜˜˜˜˜  ˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:337:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            violation_col_size = (int *)calloc(lp_data->n, ISIZE);
                                        ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:444:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(x, lp_data->x, lp_data->n*DSIZE);
                            ˜˜˜˜˜˜˜˜˜^˜
LP/lp_branch.c:673:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memset(sos_chosen, 0, ISIZE*cand_num);
                                             ˜^˜˜˜˜˜˜˜
LP/lp_branch.c:687:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(p->br_rel_cand_list, new_ord, ISIZE*cand_num);
                                                            ˜^˜˜˜˜˜˜˜
LP/lp_branch.c:1214:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(row_frac_freq, 0, ISIZE*row_num);
                                       ˜^˜˜˜˜˜˜
LP/lp_branch.c:1215:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(sos_row_size, 0, ISIZE*row_num);
                                      ˜^˜˜˜˜˜˜
LP/lp_branch.c:1216:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(row_z_cnt, 0, ISIZE*row_num);
                                   ˜^˜˜˜˜˜˜
LP/lp_branch.c:1251:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  sos_row = (int*)malloc(ISIZE*row_num);
                                              ˜^˜˜˜˜˜˜
LP/lp_branch.c:1295:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  l_ind = (int*)malloc(ISIZE*col_num);
                                            ˜^˜˜˜˜˜˜
LP/lp_branch.c:1297:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  r_ind = (int*)malloc(ISIZE*col_num);
                                            ˜^˜˜˜˜˜˜
LP/lp_branch.c:1304:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(r_ind + 1, frac_ind + 2, ISIZE*(r_cnt - 1));
                                                       ˜ ˜˜˜˜˜˜^˜˜
LP/lp_branch.c:1307:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(l_ind + 1, frac_ind + r_cnt + 1, ISIZE*(l_cnt - 1));
                                                               ˜ ˜˜˜˜˜˜^˜˜
LP/lp_branch.c:1313:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memset(l_assigned, 0, CSIZE*row_num);
                                             ˜^˜˜˜˜˜˜
LP/lp_branch.c:1314:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memset(r_assigned, 0, CSIZE*row_num);
                                             ˜^˜˜˜˜˜˜
LP/lp_branch.c:1409:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     best_can->sos_ind[li] = (int*)malloc(ISIZE*l_cnt);
                                                               ˜^˜˜˜˜
LP/lp_branch.c:1412:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                                           ISIZE*l_cnt);
                                                                ˜^˜˜˜˜
LP/lp_branch.c:1416:51: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                     best_can->sos_ind[ri] = (int*)malloc(ISIZE*r_cnt);
                                                               ˜^˜˜˜˜
LP/lp_branch.c:1419:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                                                           ISIZE*r_cnt);
                                                                ˜^˜˜˜˜
LP/lp_branch.c:1422:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(best_can->sos_ind[li], l_ind, ISIZE*l_cnt);
                                                            ˜^˜˜˜˜
LP/lp_branch.c:1423:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                  memcpy(best_can->sos_ind[ri], r_ind, ISIZE*r_cnt);
                                                            ˜^˜˜˜˜
LP/lp_branch.c:1627:79: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                        can->solutions[j] = (double *) malloc (DSIZE*lp_data->n);
                                                                    ˜˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1628:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                        memcpy(can->solutions[j], lp_data->x, DSIZE*lp_data->n);
                                                                   ˜˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1636:79: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                        can->solutions[j] = (double *) malloc (DSIZE*lp_data->n);
                                                                    ˜˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1637:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                        memcpy(can->solutions[j], lp_data->x, DSIZE*lp_data->n);
                                                                   ˜˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1734:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                              lp_data->n);
                              ˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1735:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                        memcpy(can->solutions[j], lp_data->x, DSIZE*lp_data->n);
                                                                   ˜˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1744:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                              lp_data->n);
                              ˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1745:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                        memcpy(can->solutions[j], lp_data->x, DSIZE*lp_data->n);
                                                                   ˜˜˜˜˜˜˜˜˜˜^
LP/lp_branch.c:1967:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            best_can->sol_inds[k] = (int *) malloc(best_can->sol_sizes[k]* 
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_branch.c:1969:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            best_can->solutions[k] = (double *) malloc(best_can->sol_sizes[k]* 
                                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_branch.c:1971:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(best_can->sol_inds[k], indices, best_can->sol_sizes[k] * 
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
LP/lp_branch.c:1973:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(best_can->solutions[k], values, best_can->sol_sizes[k]* 
                                                   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
LP/lp_branch.c:2104:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            cut->coef = (char *) malloc(cut->size);
                                 ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜
LP/lp_branch.c:2106:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                   (char *)lp_data->rows[branch_row].cut->coef, cut->size);
                                                                ˜˜˜˜˜^˜˜˜
LP/lp_branch.c:2125:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               (int *) realloc(desc->cutind.list, desc->cutind.size * ISIZE);
                                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_branch.c:2129:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                               desc->cutind.size * ISIZE);
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
LP/lp_branch.c:2294:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         *candidates = (branch_obj **) malloc(*cand_num * sizeof(branch_obj *));
                                              ^˜˜˜˜˜˜˜˜ ˜
LP/lp_branch.c:2361:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      *candidates = (branch_obj **) malloc(*cand_num * sizeof(branch_obj *));
                                           ^˜˜˜˜˜˜˜˜ ˜
LP/lp_branch.c:2424:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      *candidates = (branch_obj **) malloc(*cand_num * sizeof(branch_obj *));
                                           ^˜˜˜˜˜˜˜˜ ˜
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from LP/lp_branch.c:20:
In file included from ../include/sym_lp.h:24:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
83 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-cg_func.lo `test -f 'CutGen/cg_func.c' || echo './'`CutGen/cg_func.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c CutGen/cg_func.c  -fno-common -DPIC -o libSym_la-cg_func.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CutGen/cg_func.c:122:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                 new_cut->size) == 0){
                 ˜˜˜˜˜˜˜˜˜^˜˜˜
CutGen/cg_func.c:131:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tmp_cut->coef = (char *) malloc (new_cut->size * sizeof(char));
                                       ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
CutGen/cg_func.c:133:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             new_cut->size * sizeof(char));
             ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
CutGen/cg_func.c:135:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   REALLOC((*cuts), cut_data *, (*alloc_cuts), (*num_cuts + 1), BB_BUNCH);
   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
CutGen/cg_func.c:166:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   cut->size = (int)(DSIZE + nzcnt * (ISIZE + DSIZE));
                             ^˜˜˜˜ ˜
CutGen/cg_func.c:167:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   cut->coef = (char *) malloc (cut->size);
                        ˜˜˜˜˜˜  ˜˜˜˜˜^˜˜˜
CutGen/cg_func.c:172:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(cut->coef + DSIZE, (char *)values, nzcnt * DSIZE);
                                             ^˜˜˜˜ ˜
CutGen/cg_func.c:173:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(cut->coef + (nzcnt + 1) * DSIZE, (char *)indices, nzcnt*ISIZE);
                       ˜˜˜˜˜˜^˜˜  ˜
CutGen/cg_func.c:173:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(cut->coef + (nzcnt + 1) * DSIZE, (char *)indices, nzcnt*ISIZE);
                                                            ^˜˜˜˜˜
CutGen/cg_func.c:194:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   cut->size = (int)(DSIZE + nzcnt * (ISIZE + DSIZE));
                             ^˜˜˜˜ ˜
CutGen/cg_func.c:195:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   cut->coef = (char *) malloc (cut->size);
                        ˜˜˜˜˜˜  ˜˜˜˜˜^˜˜˜
CutGen/cg_func.c:200:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(cut->coef + DSIZE, (char *)values, nzcnt * DSIZE);
                                             ^˜˜˜˜ ˜
CutGen/cg_func.c:201:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(cut->coef + (nzcnt + 1) * DSIZE, (char *)indices, nzcnt*ISIZE);
                       ˜˜˜˜˜˜^˜˜  ˜
CutGen/cg_func.c:201:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(cut->coef + (nzcnt + 1) * DSIZE, (char *)indices, nzcnt*ISIZE);
                                                            ^˜˜˜˜˜
CutGen/cg_func.c:223:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (memcmp(new_cut->coef, (*cuts)[i]->coef, new_cut->size) == 0){
          ˜˜˜˜˜˜                                  ˜˜˜˜˜˜˜˜˜^˜˜˜
CutGen/cg_func.c:232:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      tmp_cut->coef = (char *) malloc (new_cut->size * sizeof(char));
                                       ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
CutGen/cg_func.c:234:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
             new_cut->size * sizeof(char));
             ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
CutGen/cg_func.c:236:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   REALLOC((*cuts), cut_data *, (*alloc_cuts), (*num_cuts + 1), BB_BUNCH);
   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CutGen/cg_func.c:25:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
55 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-cg_wrapper.lo `test -f 'CutGen/cg_wrapper.c' || echo './'`CutGen/cg_wrapper.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c CutGen/cg_wrapper.c  -fno-common -DPIC -o libSym_la-cg_wrapper.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from CutGen/cg_wrapper.c:23:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
37 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-cp_proccomm.lo `test -f 'CutPool/cp_proccomm.c' || echo './'`CutPool/cp_proccomm.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c CutPool/cp_proccomm.c  -fno-common -DPIC -o libSym_la-cp_proccomm.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
CutPool/cp_proccomm.c:67:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      cp->cur_sol.xind = (int *) malloc(cp->cur_sol.xlength * ISIZE);
                                        ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:68:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      cp->cur_sol.xval = (double *) malloc(cp->cur_sol.xlength * DSIZE);
                                           ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:92:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      buf = (char *) calloc(size, sizeof(char));
                     ˜˜˜˜˜˜ ^˜˜˜
CutPool/cp_proccomm.c:99:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         memcpy(bufc, cp_cut->cut.coef, cp_cut->cut.size);
         ˜˜˜˜˜˜                         ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
CutPool/cp_proccomm.c:146:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      buf = (char *) calloc(cp->size, sizeof(char));
                     ˜˜˜˜˜˜ ˜˜˜˜^˜˜˜
CutPool/cp_proccomm.c:153:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         cp->cuts = (cp_cut_data **) malloc(cp->allocated_cut_num *
                                            ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:162:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         cp_cut->cut.coef = (char *) malloc(cp_cut->cut.size * CSIZE);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
CutPool/cp_proccomm.c:163:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         memcpy(cp_cut->cut.coef, bufc, cp_cut->cut.size);
         ˜˜˜˜˜˜                         ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
CutPool/cp_proccomm.c:189:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tmp_cut->coef = (char *) malloc (new_cut->size * sizeof(char));
                                    ˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
CutPool/cp_proccomm.c:190:50: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   memcpy(tmp_cut->coef, new_cut->coef, new_cut->size);
   ˜˜˜˜˜˜                               ˜˜˜˜˜˜˜˜˜^˜˜˜
CutPool/cp_proccomm.c:191:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   REALLOC(cp->cuts_to_add, cut_data *, cp->cuts_to_add_size,
   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
../include/sym_macros.h:51:34: note: expanded from macro 'REALLOC'
                                (oldsize * sizeof(ptrtype)));                \
                                 ^
CutPool/cp_proccomm.c:250:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (cp->cuts, cp->allocated_cut_num * sizeof(cp_cut_data *));
                       ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:256:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (cp->cuts, cp->allocated_cut_num * sizeof(cp_cut_data *));
                       ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:262:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            (cp->cuts, cp->allocated_cut_num * sizeof(cp_cut_data *));
                       ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:289:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         cp_cut->cut.coef = (char *) ((int *)malloc (cp_cut->cut.size+ISIZE));
                                                     ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
CutPool/cp_proccomm.c:291:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                cp->cuts_to_add[i]->size*sizeof(char));
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
CutPool/cp_proccomm.c:307:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (cp->size + cp_cut->cut.size + sizeof(cp_cut_data) >
          ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
CutPool/cp_proccomm.c:315:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         while (cp->size + cp_cut->cut.size + sizeof(cp_cut_data) >
                ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
18 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-cp_func.lo `test -f 'CutPool/cp_func.c' || echo './'`CutPool/cp_func.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c CutPool/cp_func.c  -fno-common -DPIC -o libSym_la-cp_func.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
CutPool/cp_func.c:92:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      cp->cuts = (cp_cut_data **) calloc (cp->par.block_size,
                                  ˜˜˜˜˜˜  ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
CutPool/cp_func.c:138:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   qsort(cuts, cp->cut_num, sizeof(cp_cut_data *), cut_quality_cmp);
   ˜˜˜˜˜       ˜˜˜˜^˜˜˜˜˜˜
CutPool/cp_func.c:157:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   return( MEMCMP(cut0->coef, cut1->coef, cut0->size) );
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
CutPool/cp_func.c:31:42: note: expanded from macro 'MEMCMP'
#define MEMCMP(c0, c1, s) memcmp(c0, c1, s)
                                         ^
CutPool/cp_func.c:236:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   qsort(cuts, cp->cut_num, sizeof(cp_cut_data *), cutcmp);
   ˜˜˜˜˜       ˜˜˜˜^˜˜˜˜˜˜
CutPool/cp_func.c:339:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      malloc(cp->allocated_cut_num*sizeof(cp_cut_data *));
             ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CutPool/cp_func.c:349:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         (char *) malloc(cp->cuts[i]->cut.size*sizeof(char));
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
CutPool/cp_func.c:377:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      malloc(cp->allocated_cut_num*sizeof(cp_cut_data *));
             ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
CutPool/cp_func.c:386:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        (char *) malloc(cp->cuts[i]->cut.size*sizeof(char));
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
8 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-cp_wrapper.lo `test -f 'CutPool/cp_wrapper.c' || echo './'`CutPool/cp_wrapper.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c CutPool/cp_wrapper.c  -fno-common -DPIC -o libSym_la-cp_wrapper.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
CutPool/cp_wrapper.c:209:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      matind = (int *) (cut->coef + (nzcnt+ 1) * DSIZE);
                                     ˜˜˜˜˜^˜˜  ˜
1 warning generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-timemeas.lo `test -f 'Common/timemeas.c' || echo './'`Common/timemeas.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Common/timemeas.c  -fno-common -DPIC -o libSym_la-timemeas.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-sym_qsort.lo `test -f 'Common/sym_qsort.c' || echo './'`Common/sym_qsort.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Common/sym_qsort.c  -fno-common -DPIC -o libSym_la-sym_qsort.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
Common/sym_qsort.c:33:15: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort (bot, nmemb, sizeof(int), cmpint);
  ˜˜˜˜˜       ^˜˜˜˜
In file included from Common/sym_qsort.c:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<int, double, CoinFirstLess_2<int, double> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
Common/sym_qsort.c:41:4: note: in instantiation of function template specialization 'CoinSort_2<int, double>' requested here
   CoinSort_2(bot, bot+nmemb, botd);
   ^
In file included from Common/sym_qsort.c:19:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:190:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst, slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:231:3: note: in instantiation of function template specialization 'CoinSort_2<double, int, CoinFirstLess_2<double, int> >' requested here
  CoinSort_2(sfirst, slast, tfirst, CoinFirstLess_2<S,T>());
  ^
Common/sym_qsort.c:65:4: note: in instantiation of function template specialization 'CoinSort_2<double, int>' requested here
   CoinSort_2(botd, botd+nmemb, boti);
   ^
3 warnings generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-proccomm.lo `test -f 'Common/proccomm.c' || echo './'`Common/proccomm.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Common/proccomm.c  -fno-common -DPIC -o libSym_la-proccomm.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-pack_cut.lo `test -f 'Common/pack_cut.c' || echo './'`Common/pack_cut.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Common/pack_cut.c  -fno-common -DPIC -o libSym_la-pack_cut.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
Common/pack_cut.c:41:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         cut->coef = (char *) malloc(cut->size);
                              ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜
1 warning generated.
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o libSym_la-pack_array.lo `test -f 'Common/pack_array.c' || echo './'`Common/pack_array.c
 clang++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c Common/pack_array.c  -fno-common -DPIC -o libSym_la-pack_array.o
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
Common/pack_array.c:39:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      adesc->list = (int *) malloc(adesc->size * ISIZE);
                                   ˜˜˜˜˜˜˜^˜˜˜ ˜
Common/pack_array.c:70:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         dad->list = (int *) malloc(dad->size * ISIZE);
                                    ˜˜˜˜˜^˜˜˜ ˜
Common/pack_array.c:75:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      dad->stat = (int *) malloc(dad->size * ISIZE);
                                 ˜˜˜˜˜^˜˜˜ ˜
3 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD   -o libSym.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib  -no-undefined -version-info 9:10:6  libSym_la-master.lo libSym_la-master_wrapper.lo libSym_la-master_io.lo libSym_la-master_func.lo libSym_la-master_prep.lo libSym_la-master_prep_base.lo libSym_la-master_prep_sr.lo libSym_la-tm_func.lo libSym_la-tm_proccomm.lo libSym_la-lp_solver.lo libSym_la-lp_varfunc.lo libSym_la-lp_rowfunc.lo libSym_la-lp_genfunc.lo libSym_la-lp_proccomm.lo libSym_la-lp_wrapper.lo libSym_la-lp_free.lo libSym_la-lp_sp.lo libSym_la-lp_heuristics.lo  libSym_la-lp_branch.lo libSym_la-cg_func.lo libSym_la-cg_wrapper.lo libSym_la-cp_proccomm.lo libSym_la-cp_func.lo libSym_la-cp_wrapper.lo libSym_la-timemeas.lo libSym_la-sym_qsort.lo libSym_la-proccomm.lo libSym_la-pack_cut.lo libSym_la-pack_array.lo /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm     
mkdir .libs
ar cru .libs/libSym.a  libSym_la-master.o libSym_la-master_wrapper.o libSym_la-master_io.o libSym_la-master_func.o libSym_la-master_prep.o libSym_la-master_prep_base.o libSym_la-master_prep_sr.o libSym_la-tm_func.o libSym_la-tm_proccomm.o libSym_la-lp_solver.o libSym_la-lp_varfunc.o libSym_la-lp_rowfunc.o libSym_la-lp_genfunc.o libSym_la-lp_proccomm.o libSym_la-lp_wrapper.o libSym_la-lp_free.o libSym_la-lp_sp.o libSym_la-lp_heuristics.o libSym_la-lp_branch.o libSym_la-cg_func.o libSym_la-cg_wrapper.o libSym_la-cp_proccomm.o libSym_la-cp_func.o libSym_la-cp_wrapper.o libSym_la-timemeas.o libSym_la-sym_qsort.o libSym_la-proccomm.o libSym_la-pack_cut.o libSym_la-pack_array.o
ranlib .libs/libSym.a
creating libSym.la
(cd .libs && rm -f libSym.la && ln -s ../libSym.la libSym.la)
clang++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o symphony-main.o `test -f 'Master/main.c' || echo './'`Master/main.c
clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:52:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:53:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:495:6: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
        if (to[j]) 
        ˜˜  ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:535:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    dup = static_cast<char*>(malloc(len+1));
                             ˜˜˜˜˜˜ ˜˜˜^˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:788:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  CoinDrand48(true, iseed);
  ˜˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:821:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        if (getcwd(buf, size))
            ˜˜˜˜˜˜      ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:964:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:988:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seed_ = seed;
          ˜ ^˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:59:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:60:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp:10:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTreeInfo.hpp:174:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ cEntry.fixes = sequence|(cEntry.fixes&0x80000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:68:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/CglProbing.hpp:461:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
{ dis.affected = affected|(dis.affected&0xe0000000);}
                 ^˜˜˜˜˜˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:70:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomir.hpp:11:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinFactorization.hpp:22:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:208:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:228:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) {
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinIndexedVector.hpp:245:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'bool' [-Wconversion]
                 if (elements_[index]) 
                 ˜˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:71:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp:14:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:98:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:102:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return rejections_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:106:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[static_cast<int> (code)];
               ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp:110:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
        return numRejected_[ code];
               ˜˜˜˜˜˜˜˜˜˜˜˜  ^˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:16:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:479:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          memcpy(columnActivity_, input, numberColumns_ * sizeof(double));
                                         ^˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:817:18: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
          return whatsChanged_;
          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:820:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          whatsChanged_ = value;
                        ˜ ^˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:916:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return rowNames_[iRow];
                 ˜˜˜˜˜˜˜˜˜ ^˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp:925:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
          return columnNames_[iColumn];
                 ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:87:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/OsiClpSolverInterface.hpp:14:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp:18:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:75: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/ClpSolve.hpp:217:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
          independentOptions_[1]  = (independentOptions_[1] & 0xffff0000) | (action & 0xffff);
                                     ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
Master/main.c:332:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
           env->mip->is_int  = (char *)   calloc(CSIZE, env->mip->n);
                                          ˜˜˜˜˜˜        ˜˜˜˜˜˜˜˜˜˜^
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from Master/main.c:55:
In file included from ../include/sym_master.h:27:
In file included from ../include/sym_tm.h:24:
In file included from ../include/sym_cg.h:22:
In file included from ../include/sym_lp_solver.h:54:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
38 warnings generated.
/bin/sh ../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD   -o symphony -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib  symphony-main.o libSym.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm     
clang++ -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -o symphony symphony-main.o -framework Accelerate -framework Accelerate -framework Accelerate -Wl,-bind_at_load  ./.libs/libSym.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/.libs/libCgl.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/.libs/libOsiClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClpSolver.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/.libs/libOsi.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -lm
Making all in src/OsiSym
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o OsiSymSolverInterface.lo OsiSymSolverInterface.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c OsiSymSolverInterface.cpp  -fno-common -DPIC -o OsiSymSolverInterface.o
In file included from OsiSymSolverInterface.cpp:19:
In file included from ./OsiSymSolverInterface.hpp:22:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiSolverInterface.hpp:13:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:407:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return doubleValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:420:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return longValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:433:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return charValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinMessageHandler.hpp:446:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  { return stringValue_[position];}
           ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from OsiSymSolverInterface.cpp:25:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:384:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiRowCut * OsiCuts::rowCutPtr(int i) const { return rowCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:385:72: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
const OsiColCut * OsiCuts::colCutPtr(int i) const { return colCutPtrs_[i]; }
                                                           ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:386:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiRowCut * OsiCuts::rowCutPtr(int i) { return rowCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:387:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
OsiColCut * OsiCuts::colCutPtr(int i) { return colCutPtrs_[i]; }
                                               ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:444:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete rowCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:449:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  delete colCutPtrs_[i];
         ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:456:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  OsiRowCut * cut = rowCutPtrs_[i];
                    ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:457:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
  rowCutPtrs_[i]=NULL;
  ˜˜˜˜˜˜˜˜˜˜˜ ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:468:24: warning: implicit conversion changes signedness: 'const value_type' (aka 'const int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
    delete rowCutPtrs_[to_erase[i]];
           ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
OsiSymSolverInterface.cpp:876:20: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
                   sizeof(int) * lengths[i]);
                               ˜ ^˜˜˜˜˜˜˜˜˜
OsiSymSolverInterface.cpp:878:23: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
                   sizeof(double) * lengths[i]);
                                  ˜ ^˜˜˜˜˜˜˜˜˜
OsiSymSolverInterface.cpp:888:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(fake_rowsen, 'G', CSIZE*numrows);
                                    ˜^˜˜˜˜˜˜
OsiSymSolverInterface.cpp:1273:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(rowprice_, 0, getNumRows() * sizeof(double));
                           ^˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiSymSolverInterface.cpp:1286:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memset(colredcost_, 0, getNumCols() * sizeof(double));
                             ^˜˜˜˜˜˜˜˜˜˜˜ ˜
OsiSymSolverInterface.cpp:1523:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memset(rowact_, 0, DSIZE*m);
                                 ˜^
OsiSymSolverInterface.cpp:1673:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(colsol_, colsol, n*sizeof(double));
                              ^˜
OsiSymSolverInterface.cpp:1696:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(rowprice_, rowprice, getNumRows() * sizeof(double));
                               ^˜˜˜˜˜˜˜˜˜˜˜ ˜
In file included from OsiSymSolverInterface.cpp:25:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<int *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<int *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:244:6: note: in instantiation of function template specialization 'CoinSort_3<int, int, double, CoinFirstLess_3<int, int, double> >' requested here
   { CoinSort_3(indices_, indices_ + nElements_, origIndices_, elements_,
     ^
In file included from OsiSymSolverInterface.cpp:25:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiCuts.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/OsiRowCut.hpp:8:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:13:
In file included from /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:12:
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinDistance.hpp:43:13: warning: implicit conversion changes signedness: 'typename iterator_traits<double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   retVal = std::distance(first,last);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinSort.hpp:638:22: note: in instantiation of function template specialization 'coinDistance<double *>' requested here
  const size_t len = coinDistance(sfirst,slast);
                     ^
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinPackedVector.hpp:252:6: note: in instantiation of function template specialization 'CoinSort_3<double, int, int, CoinFirstLess_3<double, int, int> >' requested here
   { CoinSort_3(elements_, elements_ + nElements_, origIndices_, indices_,
     ^
23 warnings generated.
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -c -o SymWarmStart.lo SymWarmStart.cpp
 clang++ -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -c SymWarmStart.cpp  -fno-common -DPIC -o SymWarmStart.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++  -O3 -pipe -DNDEBUG -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD   -o libOsiSym.la -rpath /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 9:10:6 OsiSymSolverInterface.lo SymWarmStart.lo /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm    ../libSym.la 
mkdir .libs
ar cru .libs/libOsiSym.a  OsiSymSolverInterface.o SymWarmStart.o
ranlib .libs/libOsiSym.a
creating libOsiSym.la
(cd .libs && rm -f libOsiSym.la && ln -s ../libOsiSym.la libOsiSym.la)
make[3]: Nothing to be done for `all-am'.
make[2]: Nothing to be done for `all-am'.
Making install in CoinUtils
Making install in src
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -c -m 644 config_coinutils.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtilsConfig.h
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libCoinUtils.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la'
/usr/bin/install -c .libs/libCoinUtils.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la
/usr/bin/install -c .libs/libCoinUtils.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinAlloc.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinPresolvePsdebug.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinWarmStartVector.o) has no symbols
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Coin_C_defines.h' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Coin_C_defines.h'
 /usr/bin/install -c -m 644 'CoinAlloc.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinAlloc.hpp'
 /usr/bin/install -c -m 644 'CoinBuild.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinBuild.hpp'
 /usr/bin/install -c -m 644 'CoinDenseVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseVector.hpp'
 /usr/bin/install -c -m 644 'CoinDistance.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDistance.hpp'
 /usr/bin/install -c -m 644 'CoinError.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinError.hpp'
 /usr/bin/install -c -m 644 'CoinFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinSimpFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSimpFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinDenseFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinOslFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinOslFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinFileIO.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFileIO.hpp'
 /usr/bin/install -c -m 644 'CoinFinite.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFinite.hpp'
 /usr/bin/install -c -m 644 'CoinFloatEqual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFloatEqual.hpp'
 /usr/bin/install -c -m 644 'CoinHelperFunctions.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinHelperFunctions.hpp'
 /usr/bin/install -c -m 644 'CoinIndexedVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinIndexedVector.hpp'
 /usr/bin/install -c -m 644 'CoinLpIO.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinLpIO.hpp'
 /usr/bin/install -c -m 644 'CoinMessage.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessage.hpp'
 /usr/bin/install -c -m 644 'CoinMessageHandler.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessageHandler.hpp'
 /usr/bin/install -c -m 644 'CoinModel.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModel.hpp'
 /usr/bin/install -c -m 644 'CoinStructuredModel.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinStructuredModel.hpp'
 /usr/bin/install -c -m 644 'CoinModelUseful.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModelUseful.hpp'
 /usr/bin/install -c -m 644 'CoinMpsIO.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMpsIO.hpp'
 /usr/bin/install -c -m 644 'CoinPackedMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVectorBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVectorBase.hpp'
 /usr/bin/install -c -m 644 'CoinParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinParam.hpp'
 /usr/bin/install -c -m 644 'CoinPragma.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPragma.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDoubleton.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDoubleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDual.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDupcol.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDupcol.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveEmpty.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveEmpty.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveFixed.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveFixed.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveForcing.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveForcing.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveImpliedFree.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveImpliedFree.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveIsolated.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveIsolated.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMonitor.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMonitor.hpp'
 /usr/bin/install -c -m 644 'CoinPresolvePsdebug.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolvePsdebug.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSingleton.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSingleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSubst.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSubst.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTighten.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTighten.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTripleton.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTripleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveUseless.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveUseless.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveZeros.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveZeros.hpp'
 /usr/bin/install -c -m 644 'CoinRational.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinRational.hpp'
 /usr/bin/install -c -m 644 'CoinSearchTree.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSearchTree.hpp'
 /usr/bin/install -c -m 644 'CoinShallowPackedVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinShallowPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinSignal.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSignal.hpp'
 /usr/bin/install -c -m 644 'CoinSmartPtr.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSmartPtr.hpp'
 /usr/bin/install -c -m 644 'CoinSnapshot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSnapshot.hpp'
 /usr/bin/install -c -m 644 'CoinSort.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSort.hpp'
 /usr/bin/install -c -m 644 'CoinTime.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTime.hpp'
 /usr/bin/install -c -m 644 'CoinTypes.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTypes.hpp'
 /usr/bin/install -c -m 644 'CoinUtility.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtility.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStart.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStart.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartBasis.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartBasis.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartVector.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartDual.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartPrimalDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartPrimalDual.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'coinutils.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/coinutils.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	"pkg-config" --libs coinutils > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/coinutils_addlibs.txt
Making install in Osi
Making install in src/Osi
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -c -m 644 config_osi.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiConfig.h
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsi.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la'
/usr/bin/install -c .libs/libOsi.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la
/usr/bin/install -c .libs/libOsi.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiAuxInfo.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiAuxInfo.hpp'
 /usr/bin/install -c -m 644 'OsiBranchingObject.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiBranchingObject.hpp'
 /usr/bin/install -c -m 644 'OsiChooseVariable.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiChooseVariable.hpp'
 /usr/bin/install -c -m 644 'OsiColCut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiColCut.hpp'
 /usr/bin/install -c -m 644 'OsiCollections.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCollections.hpp'
 /usr/bin/install -c -m 644 'OsiCut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCut.hpp'
 /usr/bin/install -c -m 644 'OsiCuts.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCuts.hpp'
 /usr/bin/install -c -m 644 'OsiPresolve.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiPresolve.hpp'
 /usr/bin/install -c -m 644 'OsiRowCut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCut.hpp'
 /usr/bin/install -c -m 644 'OsiRowCutDebugger.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCutDebugger.hpp'
 /usr/bin/install -c -m 644 'OsiSolverBranch.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverBranch.hpp'
 /usr/bin/install -c -m 644 'OsiSolverInterface.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSolverParameters.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverParameters.hpp'
Making install in src/OsiCommonTest
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiCommonTests.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la'
/usr/bin/install -c .libs/libOsiCommonTests.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la
/usr/bin/install -c .libs/libOsiCommonTests.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiUnitTests.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiUnitTests.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'osi.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi.pc'
 /usr/bin/install -c -m 644 'osi-unittests.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-unittests.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs osi > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/osi_addlibs.txt
Making install in Clp
Making install in src
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libClp.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la'
/usr/bin/install -c .libs/libClp.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la
/usr/bin/install -c .libs/libClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libClpSolver.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la'
/usr/bin/install -c .libs/libClpSolver.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la
/usr/bin/install -c .libs/libClpSolver.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/sh ../../libtool --mode=install /usr/bin/install -c 'clp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp'
/usr/bin/install -c clp /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -c -m 644 config_clp.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConfig.h
make  install-exec-hook
make[5]: Nothing to be done for `install-exec-hook'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Clp_C_Interface.h' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Clp_C_Interface.h'
 /usr/bin/install -c -m 644 'ClpCholeskyBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyBase.hpp'
 /usr/bin/install -c -m 644 'ClpCholeskyDense.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyDense.hpp'
 /usr/bin/install -c -m 644 'ClpConstraint.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraint.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintLinear.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintLinear.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintQuadratic.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintQuadratic.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowDantzig.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowPivot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowPivot.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowSteepest.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpDummyMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDummyMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicExampleMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicExampleMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpEventHandler.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpEventHandler.hpp'
 /usr/bin/install -c -m 644 'ClpFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpFactorization.hpp'
 /usr/bin/install -c -m 644 'ClpGubDynamicMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpGubMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpInterior.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpInterior.hpp'
 /usr/bin/install -c -m 644 'ClpLinearObjective.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpLinearObjective.hpp'
 /usr/bin/install -c -m 644 'ClpMatrixBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMatrixBase.hpp'
 /usr/bin/install -c -m 644 'ClpMessage.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMessage.hpp'
 /usr/bin/install -c -m 644 'ClpModel.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpModel.hpp'
 /usr/bin/install -c -m 644 'ClpNetworkMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNetworkMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpNonLinearCost.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNonLinearCost.hpp'
 /usr/bin/install -c -m 644 'ClpNode.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNode.hpp'
 /usr/bin/install -c -m 644 'ClpObjective.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpObjective.hpp'
 /usr/bin/install -c -m 644 'ClpPackedMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpPdcoBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPdcoBase.hpp'
 /usr/bin/install -c -m 644 'ClpPlusMinusOneMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPlusMinusOneMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpParameters.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpParameters.hpp'
 /usr/bin/install -c -m 644 'ClpPresolve.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPresolve.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnDantzig.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnPivot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnPivot.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnSteepest.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpQuadraticObjective.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpQuadraticObjective.hpp'
 /usr/bin/install -c -m 644 'ClpSimplex.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplex.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexNonlinear.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexNonlinear.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexOther.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexOther.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexDual.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexPrimal.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexPrimal.hpp'
 /usr/bin/install -c -m 644 'ClpSolve.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSolve.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.hpp'
 /usr/bin/install -c -m 644 'Idiot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Idiot.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.cpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.cpp'
Making install in src/OsiClp
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiClp.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la'
/usr/bin/install -c .libs/libOsiClp.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la
/usr/bin/install -c .libs/libOsiClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiClpSolverInterface.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiClpSolverInterface.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'clp.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/clp.pc'
 /usr/bin/install -c -m 644 'osi-clp.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-clp.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs clp > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/clp_addlibs.txt
Making install in Cgl
Making install in src
Making install in CglAllDifferent
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglAllDifferent.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglAllDifferent.hpp'
Making install in CglClique
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglClique.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglClique.hpp'
Making install in CglDuplicateRow
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglDuplicateRow.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglDuplicateRow.hpp'
Making install in CglFlowCover
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglFlowCover.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglFlowCover.hpp'
Making install in CglGMI
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGMI.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMI.hpp'
 /usr/bin/install -c -m 644 'CglGMIParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMIParam.hpp'
Making install in CglGomory
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGomory.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGomory.hpp'
Making install in CglKnapsackCover
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglKnapsackCover.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglKnapsackCover.hpp'
Making install in CglLandP
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLandP.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandP.hpp'
 /usr/bin/install -c -m 644 'CglLandPValidator.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandPValidator.hpp'
Making install in CglLiftAndProject
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLiftAndProject.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLiftAndProject.hpp'
Making install in CglMixedIntegerRounding
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding.hpp'
Making install in CglMixedIntegerRounding2
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding2.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding2.hpp'
Making install in CglOddHole
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglOddHole.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglOddHole.hpp'
Making install in CglPreProcess
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglPreProcess.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglPreProcess.hpp'
Making install in CglProbing
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglProbing.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglProbing.hpp'
Making install in CglRedSplit
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit.hpp'
 /usr/bin/install -c -m 644 'CglRedSplitParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplitParam.hpp'
Making install in CglRedSplit2
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit2.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2.hpp'
 /usr/bin/install -c -m 644 'CglRedSplit2Param.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2Param.hpp'
Making install in CglResidualCapacity
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglResidualCapacity.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglResidualCapacity.hpp'
Making install in CglSimpleRounding
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglSimpleRounding.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglSimpleRounding.hpp'
Making install in CglTwomir
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglTwomir.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTwomir.hpp'
Making install in CglZeroHalf
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglZeroHalf.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglZeroHalf.hpp'
 /usr/bin/install -c -m 644 'Cgl012cut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Cgl012cut.hpp'
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -c -m 644 config_cgl.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglConfig.h
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libCgl.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la'
/usr/bin/install -c .libs/libCgl.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la
/usr/bin/install -c .libs/libCgl.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglCutGenerator.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglCutGenerator.hpp'
 /usr/bin/install -c -m 644 'CglMessage.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMessage.hpp'
 /usr/bin/install -c -m 644 'CglStored.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglStored.hpp'
 /usr/bin/install -c -m 644 'CglParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglParam.hpp'
 /usr/bin/install -c -m 644 'CglTreeInfo.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTreeInfo.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'cgl.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/cgl.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs cgl > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/cgl_addlibs.txt
Making install in SYMPHONY
Making install in src
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libSym.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la'
/usr/bin/install -c .libs/libSym.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la
/usr/bin/install -c .libs/libSym.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/sh ../../libtool --mode=install /usr/bin/install -c 'symphony' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony'
/usr/bin/install -c symphony /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -c -m 644 ../include/config_sym.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymConfig.h
make  install-exec-hook
make[5]: Nothing to be done for `install-exec-hook'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 '../include/symphony.h' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/symphony.h'
Making install in src/OsiSym
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiSym.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la'
/usr/bin/install -c .libs/libOsiSym.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la
/usr/bin/install -c .libs/libOsiSym.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiSymSolverInterface.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSymSolverParameters.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverParameters.hpp'
 /usr/bin/install -c -m 644 'SymWarmStart.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymWarmStart.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'symphony.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony.pc'
 /usr/bin/install -c -m 644 'symphony-app.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony-app.pc'
 /usr/bin/install -c -m 644 'osi-sym.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-sym.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs symphony > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/sym_addlibs.txt
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
touch SYMPHONY.ts
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -ISYMPHONY/include  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c lp_symphony.cc -o lp_symphony.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lpsymphony.so lp_symphony.o -LSYMPHONY/lib -lSym -lCgl -lOsiClp -lClp -lOsi -lCoinUtils -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Making all in CoinUtils
Making all in src
make  all-am
make[4]: Nothing to be done for `all-am'.
make[3]: Nothing to be done for `all-am'.
Making all in Osi
Making all in src/Osi
make  all-am
make[4]: Nothing to be done for `all-am'.
Making all in src/OsiCommonTest
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in Clp
Making all in src
make  all-am
make[4]: Nothing to be done for `all-am'.
Making all in src/OsiClp
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in Cgl
Making all in src
make  all-recursive
Making all in CglAllDifferent
make[5]: Nothing to be done for `all'.
Making all in CglClique
make[5]: Nothing to be done for `all'.
Making all in CglDuplicateRow
make[5]: Nothing to be done for `all'.
Making all in CglFlowCover
make[5]: Nothing to be done for `all'.
Making all in CglGMI
make[5]: Nothing to be done for `all'.
Making all in CglGomory
make[5]: Nothing to be done for `all'.
Making all in CglKnapsackCover
make[5]: Nothing to be done for `all'.
Making all in CglLandP
make[5]: Nothing to be done for `all'.
Making all in CglLiftAndProject
make[5]: Nothing to be done for `all'.
Making all in CglMixedIntegerRounding
make[5]: Nothing to be done for `all'.
Making all in CglMixedIntegerRounding2
make[5]: Nothing to be done for `all'.
Making all in CglOddHole
make[5]: Nothing to be done for `all'.
Making all in CglPreProcess
make[5]: Nothing to be done for `all'.
Making all in CglProbing
make[5]: Nothing to be done for `all'.
Making all in CglRedSplit
make[5]: Nothing to be done for `all'.
Making all in CglRedSplit2
make[5]: Nothing to be done for `all'.
Making all in CglResidualCapacity
make[5]: Nothing to be done for `all'.
Making all in CglSimpleRounding
make[5]: Nothing to be done for `all'.
Making all in CglTwomir
make[5]: Nothing to be done for `all'.
Making all in CglZeroHalf
make[5]: Nothing to be done for `all'.
make[5]: Nothing to be done for `all-am'.
make[3]: Nothing to be done for `all-am'.
Making all in SYMPHONY
Making all in src
make[3]: Nothing to be done for `all'.
Making all in src/OsiSym
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
make[2]: Nothing to be done for `all-am'.
Making install in CoinUtils
Making install in src
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -c -m 644 config_coinutils.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtilsConfig.h
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libCoinUtils.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la'
/usr/bin/install -c .libs/libCoinUtils.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la
/usr/bin/install -c .libs/libCoinUtils.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinAlloc.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinPresolvePsdebug.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinWarmStartVector.o) has no symbols
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Coin_C_defines.h' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Coin_C_defines.h'
 /usr/bin/install -c -m 644 'CoinAlloc.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinAlloc.hpp'
 /usr/bin/install -c -m 644 'CoinBuild.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinBuild.hpp'
 /usr/bin/install -c -m 644 'CoinDenseVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseVector.hpp'
 /usr/bin/install -c -m 644 'CoinDistance.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDistance.hpp'
 /usr/bin/install -c -m 644 'CoinError.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinError.hpp'
 /usr/bin/install -c -m 644 'CoinFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinSimpFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSimpFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinDenseFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinOslFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinOslFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinFileIO.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFileIO.hpp'
 /usr/bin/install -c -m 644 'CoinFinite.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFinite.hpp'
 /usr/bin/install -c -m 644 'CoinFloatEqual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFloatEqual.hpp'
 /usr/bin/install -c -m 644 'CoinHelperFunctions.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinHelperFunctions.hpp'
 /usr/bin/install -c -m 644 'CoinIndexedVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinIndexedVector.hpp'
 /usr/bin/install -c -m 644 'CoinLpIO.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinLpIO.hpp'
 /usr/bin/install -c -m 644 'CoinMessage.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessage.hpp'
 /usr/bin/install -c -m 644 'CoinMessageHandler.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessageHandler.hpp'
 /usr/bin/install -c -m 644 'CoinModel.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModel.hpp'
 /usr/bin/install -c -m 644 'CoinStructuredModel.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinStructuredModel.hpp'
 /usr/bin/install -c -m 644 'CoinModelUseful.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModelUseful.hpp'
 /usr/bin/install -c -m 644 'CoinMpsIO.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMpsIO.hpp'
 /usr/bin/install -c -m 644 'CoinPackedMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVectorBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVectorBase.hpp'
 /usr/bin/install -c -m 644 'CoinParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinParam.hpp'
 /usr/bin/install -c -m 644 'CoinPragma.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPragma.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDoubleton.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDoubleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDual.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDupcol.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDupcol.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveEmpty.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveEmpty.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveFixed.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveFixed.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveForcing.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveForcing.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveImpliedFree.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveImpliedFree.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveIsolated.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveIsolated.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMonitor.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMonitor.hpp'
 /usr/bin/install -c -m 644 'CoinPresolvePsdebug.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolvePsdebug.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSingleton.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSingleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSubst.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSubst.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTighten.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTighten.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTripleton.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTripleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveUseless.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveUseless.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveZeros.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveZeros.hpp'
 /usr/bin/install -c -m 644 'CoinRational.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinRational.hpp'
 /usr/bin/install -c -m 644 'CoinSearchTree.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSearchTree.hpp'
 /usr/bin/install -c -m 644 'CoinShallowPackedVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinShallowPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinSignal.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSignal.hpp'
 /usr/bin/install -c -m 644 'CoinSmartPtr.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSmartPtr.hpp'
 /usr/bin/install -c -m 644 'CoinSnapshot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSnapshot.hpp'
 /usr/bin/install -c -m 644 'CoinSort.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSort.hpp'
 /usr/bin/install -c -m 644 'CoinTime.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTime.hpp'
 /usr/bin/install -c -m 644 'CoinTypes.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTypes.hpp'
 /usr/bin/install -c -m 644 'CoinUtility.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtility.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStart.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStart.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartBasis.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartBasis.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartVector.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartVector.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartDual.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartPrimalDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartPrimalDual.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'coinutils.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/coinutils.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	"pkg-config" --libs coinutils > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/coinutils_addlibs.txt
Making install in Osi
Making install in src/Osi
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -c -m 644 config_osi.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiConfig.h
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsi.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la'
/usr/bin/install -c .libs/libOsi.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la
/usr/bin/install -c .libs/libOsi.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiAuxInfo.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiAuxInfo.hpp'
 /usr/bin/install -c -m 644 'OsiBranchingObject.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiBranchingObject.hpp'
 /usr/bin/install -c -m 644 'OsiChooseVariable.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiChooseVariable.hpp'
 /usr/bin/install -c -m 644 'OsiColCut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiColCut.hpp'
 /usr/bin/install -c -m 644 'OsiCollections.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCollections.hpp'
 /usr/bin/install -c -m 644 'OsiCut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCut.hpp'
 /usr/bin/install -c -m 644 'OsiCuts.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCuts.hpp'
 /usr/bin/install -c -m 644 'OsiPresolve.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiPresolve.hpp'
 /usr/bin/install -c -m 644 'OsiRowCut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCut.hpp'
 /usr/bin/install -c -m 644 'OsiRowCutDebugger.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCutDebugger.hpp'
 /usr/bin/install -c -m 644 'OsiSolverBranch.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverBranch.hpp'
 /usr/bin/install -c -m 644 'OsiSolverInterface.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSolverParameters.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverParameters.hpp'
Making install in src/OsiCommonTest
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiCommonTests.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la'
/usr/bin/install -c .libs/libOsiCommonTests.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la
/usr/bin/install -c .libs/libOsiCommonTests.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiUnitTests.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiUnitTests.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'osi.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi.pc'
 /usr/bin/install -c -m 644 'osi-unittests.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-unittests.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs osi > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/osi_addlibs.txt
Making install in Clp
Making install in src
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libClp.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la'
/usr/bin/install -c .libs/libClp.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la
/usr/bin/install -c .libs/libClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libClpSolver.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la'
/usr/bin/install -c .libs/libClpSolver.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la
/usr/bin/install -c .libs/libClpSolver.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/sh ../../libtool --mode=install /usr/bin/install -c 'clp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp'
/usr/bin/install -c clp /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -c -m 644 config_clp.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConfig.h
make  install-exec-hook
make[5]: Nothing to be done for `install-exec-hook'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Clp_C_Interface.h' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Clp_C_Interface.h'
 /usr/bin/install -c -m 644 'ClpCholeskyBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyBase.hpp'
 /usr/bin/install -c -m 644 'ClpCholeskyDense.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyDense.hpp'
 /usr/bin/install -c -m 644 'ClpConstraint.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraint.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintLinear.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintLinear.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintQuadratic.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintQuadratic.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowDantzig.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowPivot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowPivot.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowSteepest.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpDummyMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDummyMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicExampleMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicExampleMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpEventHandler.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpEventHandler.hpp'
 /usr/bin/install -c -m 644 'ClpFactorization.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpFactorization.hpp'
 /usr/bin/install -c -m 644 'ClpGubDynamicMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpGubMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpInterior.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpInterior.hpp'
 /usr/bin/install -c -m 644 'ClpLinearObjective.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpLinearObjective.hpp'
 /usr/bin/install -c -m 644 'ClpMatrixBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMatrixBase.hpp'
 /usr/bin/install -c -m 644 'ClpMessage.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMessage.hpp'
 /usr/bin/install -c -m 644 'ClpModel.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpModel.hpp'
 /usr/bin/install -c -m 644 'ClpNetworkMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNetworkMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpNonLinearCost.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNonLinearCost.hpp'
 /usr/bin/install -c -m 644 'ClpNode.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNode.hpp'
 /usr/bin/install -c -m 644 'ClpObjective.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpObjective.hpp'
 /usr/bin/install -c -m 644 'ClpPackedMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpPdcoBase.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPdcoBase.hpp'
 /usr/bin/install -c -m 644 'ClpPlusMinusOneMatrix.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPlusMinusOneMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpParameters.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpParameters.hpp'
 /usr/bin/install -c -m 644 'ClpPresolve.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPresolve.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnDantzig.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnPivot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnPivot.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnSteepest.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpQuadraticObjective.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpQuadraticObjective.hpp'
 /usr/bin/install -c -m 644 'ClpSimplex.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplex.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexNonlinear.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexNonlinear.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexOther.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexOther.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexDual.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexDual.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexPrimal.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexPrimal.hpp'
 /usr/bin/install -c -m 644 'ClpSolve.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSolve.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.hpp'
 /usr/bin/install -c -m 644 'Idiot.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Idiot.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.cpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.cpp'
Making install in src/OsiClp
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiClp.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la'
/usr/bin/install -c .libs/libOsiClp.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la
/usr/bin/install -c .libs/libOsiClp.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiClpSolverInterface.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiClpSolverInterface.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'clp.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/clp.pc'
 /usr/bin/install -c -m 644 'osi-clp.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-clp.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs clp > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/clp_addlibs.txt
Making install in Cgl
Making install in src
Making install in CglAllDifferent
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglAllDifferent.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglAllDifferent.hpp'
Making install in CglClique
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglClique.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglClique.hpp'
Making install in CglDuplicateRow
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglDuplicateRow.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglDuplicateRow.hpp'
Making install in CglFlowCover
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglFlowCover.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglFlowCover.hpp'
Making install in CglGMI
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGMI.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMI.hpp'
 /usr/bin/install -c -m 644 'CglGMIParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMIParam.hpp'
Making install in CglGomory
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGomory.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGomory.hpp'
Making install in CglKnapsackCover
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglKnapsackCover.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglKnapsackCover.hpp'
Making install in CglLandP
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLandP.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandP.hpp'
 /usr/bin/install -c -m 644 'CglLandPValidator.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandPValidator.hpp'
Making install in CglLiftAndProject
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLiftAndProject.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLiftAndProject.hpp'
Making install in CglMixedIntegerRounding
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding.hpp'
Making install in CglMixedIntegerRounding2
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding2.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding2.hpp'
Making install in CglOddHole
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglOddHole.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglOddHole.hpp'
Making install in CglPreProcess
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglPreProcess.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglPreProcess.hpp'
Making install in CglProbing
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglProbing.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglProbing.hpp'
Making install in CglRedSplit
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit.hpp'
 /usr/bin/install -c -m 644 'CglRedSplitParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplitParam.hpp'
Making install in CglRedSplit2
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit2.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2.hpp'
 /usr/bin/install -c -m 644 'CglRedSplit2Param.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2Param.hpp'
Making install in CglResidualCapacity
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglResidualCapacity.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglResidualCapacity.hpp'
Making install in CglSimpleRounding
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglSimpleRounding.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglSimpleRounding.hpp'
Making install in CglTwomir
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglTwomir.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTwomir.hpp'
Making install in CglZeroHalf
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglZeroHalf.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglZeroHalf.hpp'
 /usr/bin/install -c -m 644 'Cgl012cut.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Cgl012cut.hpp'
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -c -m 644 config_cgl.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglConfig.h
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libCgl.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la'
/usr/bin/install -c .libs/libCgl.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la
/usr/bin/install -c .libs/libCgl.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglCutGenerator.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglCutGenerator.hpp'
 /usr/bin/install -c -m 644 'CglMessage.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMessage.hpp'
 /usr/bin/install -c -m 644 'CglStored.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglStored.hpp'
 /usr/bin/install -c -m 644 'CglParam.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglParam.hpp'
 /usr/bin/install -c -m 644 'CglTreeInfo.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTreeInfo.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'cgl.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/cgl.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs cgl > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/cgl_addlibs.txt
Making install in SYMPHONY
Making install in src
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libSym.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la'
/usr/bin/install -c .libs/libSym.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la
/usr/bin/install -c .libs/libSym.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/sh ../../libtool --mode=install /usr/bin/install -c 'symphony' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony'
/usr/bin/install -c symphony /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony
/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -c -m 644 ../include/config_sym.h /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymConfig.h
make  install-exec-hook
make[5]: Nothing to be done for `install-exec-hook'.
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 '../include/symphony.h' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/symphony.h'
Making install in src/OsiSym
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiSym.la' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la'
/usr/bin/install -c .libs/libOsiSym.lai /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la
/usr/bin/install -c .libs/libOsiSym.a /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
chmod 644 /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
ranlib /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiSymSolverInterface.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSymSolverParameters.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverParameters.hpp'
 /usr/bin/install -c -m 644 'SymWarmStart.hpp' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymWarmStart.hpp'
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'symphony.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony.pc'
 /usr/bin/install -c -m 644 'symphony-app.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony-app.pc'
 /usr/bin/install -c -m 644 'osi-sym.pc' '/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-sym.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib/pkgconfig:/Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs symphony > /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/sym_addlibs.txt
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
touch SYMPHONY.ts
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -ISYMPHONY/include  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c lp_symphony.cc -o lp_symphony.o
installing to /Users/biocbuild/bbs-3.5-bioc/meat/lpsymphony.Rcheck/lpsymphony/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lpsymphony)

name	user	system	elapsed
lpsymphony_solve	0.134	0.008	0.142