BioC 3.5: CHECK report for genbankr on tokay2

Package: genbankr

Version: 1.4.0

Command: rm -rf genbankr.buildbin-libdir genbankr.Rcheck && mkdir genbankr.buildbin-libdir genbankr.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genbankr.buildbin-libdir genbankr_1.4.0.tar.gz >genbankr.Rcheck\00install.out 2>&1 && cp genbankr.Rcheck\00install.out genbankr-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=genbankr.buildbin-libdir --install="check:genbankr-install.out" --force-multiarch --no-vignettes --timings genbankr_1.4.0.tar.gz

StartedAt: 2017-10-17 23:57:19 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-18 00:03:51 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 391.6 seconds

RetCode: 0

Status:  OK

CheckDir: genbankr.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf genbankr.buildbin-libdir genbankr.Rcheck && mkdir genbankr.buildbin-libdir genbankr.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genbankr.buildbin-libdir genbankr_1.4.0.tar.gz >genbankr.Rcheck\00install.out 2>&1 && cp genbankr.Rcheck\00install.out genbankr-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=genbankr.buildbin-libdir --install="check:genbankr-install.out" --force-multiarch --no-vignettes --timings genbankr_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/genbankr.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genbankr/DESCRIPTION' ... OK
* this is package 'genbankr' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'genbankr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'genbankr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'genbankr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genbankr' as genbankr_1.4.0.zip
* DONE (genbankr)

name	user	system	elapsed
GBAccession	0	0	0
GenBank-classes	2.21	0.02	2.23
api-methods	2.32	0.03	2.34
gbk-api	1.15	0.05	1.20
gbkfile	1.21	0.00	1.21
intergenic	1.34	0.02	1.35
make_gbobjs	1.14	0.00	1.15
otherFeatures	1.63	0.00	1.62
parseGenBank	0.82	0.00	0.83
readGenBank	1.22	0.00	1.22
txdb	0.33	0.00	0.33
variants	1.24	0.00	1.23

name	user	system	elapsed
GBAccession	0	0	0
GenBank-classes	3.17	0.03	3.21
api-methods	2.36	0.04	2.39
gbk-api	1.47	0.00	1.47
gbkfile	1.51	0.00	1.52
intergenic	1.71	0.00	1.70
make_gbobjs	1.43	0.00	1.44
otherFeatures	1.5	0.0	1.5
parseGenBank	0.97	0.01	0.98
readGenBank	1.49	0.00	1.49
txdb	0.42	0.00	0.42
variants	1.51	0.00	1.51