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BioC 3.5: BUILD report for fgsea on toluca2

This page was generated on 2017-04-23 14:41:51 -0400 (Sun, 23 Apr 2017).

Package 438/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fgsea 1.1.3
Alexey Sergushichev
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fgsea
Last Changed Rev: 128894 / Revision: 129046
Last Changed Date: 2017-04-19 11:27:53 -0400 (Wed, 19 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: fgsea
Version: 1.1.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea
StartedAt: 2017-04-22 23:02:30 -0400 (Sat, 22 Apr 2017)
EndedAt: 2017-04-22 23:03:17 -0400 (Sat, 22 Apr 2017)
EllapsedTime: 47.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea
###
##############################################################################
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* checking for file ‘fgsea/DESCRIPTION’ ... OK
* preparing ‘fgsea’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rcpp
Loading required namespace: reactome.db
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:many mapping between keys and columns
Quitting from lines 86-89 (fgsea-tutorial.Rmd) 
Error: processing vignette 'fgsea-tutorial.Rmd' failed with diagnostics:
'names' attribute [20842] must be the same length as the vector [1504]
Execution halted