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BioC 3.5: BUILD BIN report for discordant on toluca2

This page was generated on 2017-04-23 14:42:36 -0400 (Sun, 23 Apr 2017).

Package 352/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
discordant 0.99.8
Charlotte Siska
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/discordant
Last Changed Rev: 125902 / Revision: 129046
Last Changed Date: 2017-01-12 11:40:31 -0500 (Thu, 12 Jan 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: discordant
Version: 0.99.8
Command: rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh discordant_0.99.8.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R discordant.buildbin-libdir
StartedAt: 2017-04-23 11:55:05 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 11:55:14 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 8.5 seconds
RetCode: 0
Status:  OK 
PackageFile: discordant_0.99.8.tgz
PackageFileSize: 337.8 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh discordant_0.99.8.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R discordant.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=discordant.buildbin-libdir discordant_0.99.8.tar.gz'
>>>>>>> 

* installing *source* package ‘discordant’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c discordant.c -o discordant.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o discordant.so discordant.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/discordant.buildbin-libdir/discordant/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (discordant)


>>>>>>> 
>>>>>>> FIXING LINKS FOR discordant.buildbin-libdir/discordant/libs//discordant.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"