Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: BUILD BIN report for contiBAIT on oaxaca

This page was generated on 2017-03-04 16:51:42 -0500 (Sat, 04 Mar 2017).

Package 260/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
contiBAIT 1.3.0
Kieran O'Neill
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/contiBAIT
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]

Summary

Package: contiBAIT
Version: 1.3.0
Command: rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh contiBAIT_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R contiBAIT.buildbin-libdir
StartedAt: 2017-03-04 11:08:12 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:08:57 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 45.2 seconds
RetCode: 0
Status:  OK 
PackageFile: contiBAIT_1.3.0.tgz
PackageFileSize: 3.984 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh contiBAIT_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R contiBAIT.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=contiBAIT.buildbin-libdir contiBAIT_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package ‘contiBAIT’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BH/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c computeSim.cpp -o computeSim.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BH/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c orderContigsGreedy.cpp -o orderContigsGreedy.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o contiBAIT.so computeSim.o orderContigsGreedy.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/contiBAIT.buildbin-libdir/contiBAIT/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (contiBAIT)


>>>>>>> 
>>>>>>> FIXING LINKS FOR contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"