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BioC 3.5: BUILD BIN report for cn.mops on veracruz2

This page was generated on 2017-10-18 14:30:10 -0400 (Wed, 18 Oct 2017).

Package 242/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cn.mops 1.22.0
Guenter Klambauer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/cn.mops
Branch: RELEASE_3_5
Last Commit: dd4e1c8
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: cn.mops
Version: 1.22.0
Command: rm -rf cn.mops.buildbin-libdir && mkdir cn.mops.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cn.mops_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cn.mops.buildbin-libdir
StartedAt: 2017-10-18 10:42:54 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:43:09 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 15.2 seconds
RetCode: 0
Status:  OK 
PackageFile: cn.mops_1.22.0.tgz
PackageFileSize: 1.103 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cn.mops.buildbin-libdir && mkdir cn.mops.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cn.mops_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cn.mops.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cn.mops.buildbin-libdir cn.mops_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cn.mops’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_cnmops.c -o R_init_cnmops.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cnmops.cpp -o cnmops.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c segment.cpp -o segment.o
segment.cpp:64:9: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double beta,nn;
               ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:228:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cn.mops.so R_init_cnmops.o cnmops.o segment.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/cn.mops.buildbin-libdir/cn.mops/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cn.mops)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cn.mops.buildbin-libdir/cn.mops/libs//cn.mops.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "cn.mops.buildbin-libdir/cn.mops/libs//cn.mops.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "cn.mops.buildbin-libdir/cn.mops/libs//cn.mops.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "cn.mops.buildbin-libdir/cn.mops/libs//cn.mops.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "cn.mops.buildbin-libdir/cn.mops/libs//cn.mops.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "cn.mops.buildbin-libdir/cn.mops/libs//cn.mops.so"