BioC 3.5: CHECK report for cellbaseR on tokay2

Package: cellbaseR

Version: 1.0.1

Command: rm -rf cellbaseR.buildbin-libdir cellbaseR.Rcheck && mkdir cellbaseR.buildbin-libdir cellbaseR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cellbaseR.buildbin-libdir cellbaseR_1.0.1.tar.gz >cellbaseR.Rcheck\00install.out 2>&1 && cp cellbaseR.Rcheck\00install.out cellbaseR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=cellbaseR.buildbin-libdir --install="check:cellbaseR-install.out" --force-multiarch --no-vignettes --timings cellbaseR_1.0.1.tar.gz

StartedAt: 2017-10-17 22:35:10 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 23:15:10 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 2400.0 seconds

RetCode: None

Status:  TIMEOUT

CheckDir: cellbaseR.Rcheck

Warnings: NA

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### Running command:
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###   rm -rf cellbaseR.buildbin-libdir cellbaseR.Rcheck && mkdir cellbaseR.buildbin-libdir cellbaseR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cellbaseR.buildbin-libdir cellbaseR_1.0.1.tar.gz >cellbaseR.Rcheck\00install.out 2>&1 && cp cellbaseR.Rcheck\00install.out cellbaseR-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=cellbaseR.buildbin-libdir --install="check:cellbaseR-install.out" --force-multiarch --no-vignettes --timings cellbaseR_1.0.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/cellbaseR.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellbaseR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cellbaseR' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cellbaseR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ...

install for i386

* installing *source* package 'cellbaseR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cellbaseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cellbaseR' as cellbaseR_1.0.1.zip
* DONE (cellbaseR)

name	user	system	elapsed
AnnotateVcf-CellBaseR-method	6.33	1.36	52.94
CellBaseParam	0	0	0
CellBaseR	0.20	0.03	0.49
createGeneModel	0.94	0.01	1.54
getCaddScores	0.22	0.00	0.67
getCellBase-CellBaseR-method	0.23	0.00	0.71
getCellBaseResourceHelp	0.44	0.00	0.95
getChromosomeInfo-CellBaseR-method	0.19	0.00	0.66
getClinical-CellBaseR-method	12.39	0.21	14.77