BioC 3.5: CHECK report for TCGAbiolinksGUI on tokay2

Package: TCGAbiolinksGUI

Version: 1.2.1

Command: rm -rf TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI.Rcheck && mkdir TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.2.1.tar.gz >TCGAbiolinksGUI.Rcheck\00install.out 2>&1 && cp TCGAbiolinksGUI.Rcheck\00install.out TCGAbiolinksGUI-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=TCGAbiolinksGUI.buildbin-libdir --install="check:TCGAbiolinksGUI-install.out" --force-multiarch --no-vignettes --timings TCGAbiolinksGUI_1.2.1.tar.gz

StartedAt: 2017-10-18 03:22:39 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 03:32:44 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 605.0 seconds

RetCode: 0

Status:  OK

CheckDir: TCGAbiolinksGUI.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI.Rcheck && mkdir TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.2.1.tar.gz >TCGAbiolinksGUI.Rcheck\00install.out 2>&1 && cp TCGAbiolinksGUI.Rcheck\00install.out TCGAbiolinksGUI-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=TCGAbiolinksGUI.buildbin-libdir --install="check:TCGAbiolinksGUI-install.out" --force-multiarch --no-vignettes --timings TCGAbiolinksGUI_1.2.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/TCGAbiolinksGUI.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCGAbiolinksGUI/DESCRIPTION' ... OK
* this is package 'TCGAbiolinksGUI' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCGAbiolinksGUI' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 30.3Mb
  sub-directories of 1Mb or more:
    app   1.1Mb
    doc  28.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  'DT' 'dplyr'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/TCGAbiolinksGUI.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'TCGAbiolinksGUI' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'TCGAbiolinksGUI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAbiolinksGUI' as TCGAbiolinksGUI_1.2.1.zip
* DONE (TCGAbiolinksGUI)

name	user	system	elapsed
TCGAbiolinksGUI	0	0	0

name	user	system	elapsed
TCGAbiolinksGUI	0	0	0