MinimumDistance 1.20.0
Robert B Scharpf
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/MinimumDistance | | Branch: RELEASE_3_5 | | Last Commit: f509c44 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd MinimumDistance.buildbin-libdir/MinimumDistance && zip -r ../../MinimumDistance_1.20.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: data/ (304 bytes security) (stored 0%)
adding: data/md_exp.rda (264 bytes security) (deflated 0%)
adding: data/md_gr.rda (264 bytes security) (stored 0%)
adding: data/trioSetListExample.rda (264 bytes security) (deflated 0%)
adding: DESCRIPTION (264 bytes security) (deflated 51%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/index.html (264 bytes security) (deflated 59%)
adding: doc/MinimumDistance.pdf (264 bytes security) (deflated 4%)
adding: doc/MinimumDistance.R (264 bytes security) (deflated 78%)
adding: doc/MinimumDistance.Rnw (264 bytes security) (deflated 64%)
adding: extdata/ (304 bytes security) (stored 0%)
adding: extdata/baf.rda (264 bytes security) (stored 0%)
adding: extdata/exampleFiles.R (264 bytes security) (deflated 62%)
adding: extdata/F.txt (264 bytes security) (deflated 61%)
adding: extdata/logRratio.rda (264 bytes security) (stored 0%)
adding: extdata/M.txt (264 bytes security) (deflated 61%)
adding: extdata/mdgr.rds (264 bytes security) (deflated 1%)
adding: extdata/md_granges.rds (264 bytes security) (deflated 1%)
adding: extdata/O.txt (264 bytes security) (deflated 62%)
adding: extdata/O1.txt (264 bytes security) (deflated 62%)
adding: extdata/pedigreeInfo.rda (264 bytes security) (stored 0%)
adding: extdata/pennCNV_MendelianProb.rda (264 bytes security) (deflated 2%)
adding: extdata/sample.sheet.rda (264 bytes security) (stored 0%)
adding: extdata/trioSet12023chr12.rda (264 bytes security) (stored 0%)
adding: help/ (304 bytes security) (stored 0%)
adding: help/aliases.rds (264 bytes security) (stored 0%)
adding: help/AnIndex (264 bytes security) (deflated 83%)
adding: help/MinimumDistance.rdb (264 bytes security) (deflated 1%)
adding: help/MinimumDistance.rdx (264 bytes security) (stored 0%)
adding: help/paths.rds (264 bytes security) (stored 0%)
adding: html/ (304 bytes security) (stored 0%)
adding: html/00Index.html (264 bytes security) (deflated 88%)
adding: html/R.css (264 bytes security) (deflated 75%)
adding: INDEX (264 bytes security) (deflated 72%)
adding: MD5 (264 bytes security) (deflated 47%)
adding: Meta/ (304 bytes security) (stored 0%)
adding: Meta/data.rds (264 bytes security) (stored 0%)
adding: Meta/features.rds (264 bytes security) (stored 0%)
adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
adding: Meta/links.rds (264 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
adding: Meta/package.rds (264 bytes security) (stored 0%)
adding: Meta/Rd.rds (264 bytes security) (stored 0%)
adding: Meta/vignette.rds (264 bytes security) (stored 0%)
adding: NAMESPACE (264 bytes security) (deflated 70%)
adding: NEWS (264 bytes security) (deflated 35%)
adding: NEWS.Rd (264 bytes security) (deflated 18%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/MinimumDistance (264 bytes security) (deflated 41%)
adding: R/MinimumDistance.rdb (264 bytes security) (deflated 25%)
adding: R/MinimumDistance.rdx (264 bytes security) (deflated 5%)
adding: scripts/ (304 bytes security) (stored 0%)
adding: scripts/affy.R (264 bytes security) (deflated 66%)
adding: scripts/Affy2.R (264 bytes security) (deflated 64%)
adding: scripts/cleft_notParallel.Rnw (264 bytes security) (deflated 66%)
adding: scripts/Discordance.Rnw (264 bytes security) (deflated 11%)
adding: scripts/logR.baf.rda (264 bytes security) (deflated 2%)
adding: scripts/runDiscordance.R (264 bytes security) (deflated 36%)
adding: scripts/Sweave.sty (264 bytes security) (deflated 57%)
adding: unitTests/ (304 bytes security) (stored 0%)
adding: unitTests/Makefile (264 bytes security) (deflated 64%)
adding: unitTests/report.html (264 bytes security) (deflated 81%)
adding: unitTests/report.txt (264 bytes security) (deflated 77%)
adding: unitTests/reportSummary.txt (264 bytes security) (deflated 42%)
adding: unitTests/test_calculateMindist.R (264 bytes security) (deflated 50%)
adding: unitTests/test_callDenovoSegments.R (264 bytes security) (deflated 66%)
adding: unitTests/test_few_markers.R (264 bytes security) (deflated 69%)
adding: unitTests/test_FilterParam.R (264 bytes security) (stored 0%)
adding: unitTests/test_MinDistExperiment.R (264 bytes security) (stored 0%)
adding: unitTests/test_Pedigree-class.R (264 bytes security) (deflated 71%)
adding: unitTests/test_PedigreeViews.R (264 bytes security) (deflated 47%)
adding: unitTests/test_posteriorCalls.R (264 bytes security) (deflated 59%)
adding: unitTests/test_quads.R (264 bytes security) (deflated 65%)
adding: unitTests/test_rdsViews.R (264 bytes security) (stored 0%)
adding: unitTests/test_SnpArrayExperiment.R (264 bytes security) (deflated 62%)
adding: unitTests/test_splitsForCBS.R (264 bytes security) (deflated 47%)
adding: unitTests/test_TrioSetList.R (264 bytes security) (deflated 74%)