FGNet 3.10.0
Sara Aibar
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/FGNet | | Branch: RELEASE_3_5 | | Last Commit: e0fa2c3 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | ERROR | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | ERROR | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FGNet
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* checking for file ‘FGNet/DESCRIPTION’ ... OK
* preparing ‘FGNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
trying URL 'http://gtlinker.cnb.csic.es/jobs/3907019/global_hash'
Content type 'text/plain' length 3341 bytes
==================================================
downloaded 3341 bytes
Results downloaded to folder '3907019_gtLinker'
Metagroups and Gene-term sets tables saved as 3907019_gtLinker_formatted_metagroups.txt and 3907019_gtLinker_formatted_gtSets.txt.
trying URL 'http://gtlinker.cnb.csic.es/jobs/1639610/global_hash'
Content type 'text/plain' length 3656 bytes
==================================================
downloaded 3656 bytes
Results downloaded to folder '1639610_gtLinker'
Metagroups and Gene-term sets tables saved as 1639610_gtLinker_formatted_metagroups.txt and 1639610_gtLinker_formatted_gtSets.txt.
The following metagroups/clusters have been filtered out: 1, 3, 4
Attaching package: 'igraph'
The following object is masked from 'package:IRanges':
union
The following object is masked from 'package:S4Vectors':
union
The following objects are masked from 'package:BiocGenerics':
normalize, union
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
The following metagroups/clusters have been filtered out: 1, 3, 4
Warning in fun(libname, pkgname) : couldn't connect to display ":1.0"
Quitting from lines 500-504 (FGNet.Rmd)
Error: processing vignette 'FGNet.Rmd' failed with diagnostics:
[tcl] invalid command name "font".
Execution halted