BioC 3.5: CHECK report for DRIMSeq on tokay2

Package: DRIMSeq

Version: 1.4.1

Command: rm -rf DRIMSeq.buildbin-libdir DRIMSeq.Rcheck && mkdir DRIMSeq.buildbin-libdir DRIMSeq.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DRIMSeq.buildbin-libdir DRIMSeq_1.4.1.tar.gz >DRIMSeq.Rcheck\00install.out 2>&1 && cp DRIMSeq.Rcheck\00install.out DRIMSeq-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=DRIMSeq.buildbin-libdir --install="check:DRIMSeq-install.out" --force-multiarch --no-vignettes --timings DRIMSeq_1.4.1.tar.gz

StartedAt: 2017-10-17 23:25:05 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 23:32:46 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 461.7 seconds

RetCode: 0

Status:  OK

CheckDir: DRIMSeq.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf DRIMSeq.buildbin-libdir DRIMSeq.Rcheck && mkdir DRIMSeq.buildbin-libdir DRIMSeq.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DRIMSeq.buildbin-libdir DRIMSeq_1.4.1.tar.gz >DRIMSeq.Rcheck\00install.out 2>&1 && cp DRIMSeq.Rcheck\00install.out DRIMSeq-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=DRIMSeq.buildbin-libdir --install="check:DRIMSeq-install.out" --force-multiarch --no-vignettes --timings DRIMSeq_1.4.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/DRIMSeq.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DRIMSeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DRIMSeq' version '1.4.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DRIMSeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
dmSQTLtest-class 154.78   0.22   155.0
dmDStest-class    13.62   0.06    13.8
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
dmSQTLtest-class 123.13   0.16  123.29
dmDStest-class    10.63   0.01   10.64
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'DRIMSeq' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DRIMSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DRIMSeq' as DRIMSeq_1.4.1.zip
* DONE (DRIMSeq)

name	user	system	elapsed
dmDSdata-class	0.00	0.02	0.01
dmDSdata	0.02	0.00	0.02
dmDSfit-class	0	0	0
dmDSprecision-class	0.02	0.00	0.02
dmDStest-class	13.62	0.06	13.80
dmFilter	0.02	0.01	0.09
dmFit	0	0	0
dmPrecision	0	0	0
dmSQTLdata-class	0	0	0
dmSQTLdata	0.01	0.00	0.02
dmSQTLfit-class	0.02	0.00	0.01
dmSQTLprecision-class	0.02	0.00	0.02
dmSQTLtest-class	154.78	0.22	155.00
dmTest	0.01	0.00	0.02
plotData	0.02	0.02	0.03
plotPValues	0.01	0.00	0.01
plotPrecision	0.02	0.00	0.02
plotProportions	0.01	0.00	0.01

name	user	system	elapsed
dmDSdata-class	0.01	0.00	0.02
dmDSdata	0.00	0.01	0.01
dmDSfit-class	0.01	0.00	0.02
dmDSprecision-class	0.00	0.02	0.01
dmDStest-class	10.63	0.01	10.64
dmFilter	0.01	0.00	0.02
dmFit	0.02	0.00	0.01
dmPrecision	0	0	0
dmSQTLdata-class	0.02	0.00	0.02
dmSQTLdata	0	0	0
dmSQTLfit-class	0.01	0.00	0.01
dmSQTLprecision-class	0	0	0
dmSQTLtest-class	123.13	0.16	123.29
dmTest	0	0	0
plotData	0.02	0.00	0.02
plotPValues	0	0	0
plotPrecision	0.01	0.00	0.01
plotProportions	0.02	0.00	0.02