DNAcopy 1.50.1
Venkatraman E. Seshan
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/DNAcopy | | Branch: RELEASE_3_5 | | Last Commit: a201530 | | Last Changed Date: 2017-05-05 15:32:27 -0400 (Fri, 05 May 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/DNAcopy_1.50.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir --merge-multiarch DNAcopy_1.50.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL DNAcopy_1.50.1.zip && rm DNAcopy_1.50.1.tar.gz DNAcopy_1.50.1.zip
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install for i386
* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/local323/lib/i386 -LC:/local323/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/local323/lib/x64 -LC:/local323/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DNAcopy' as DNAcopy_1.50.1.zip
* DONE (DNAcopy)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'DNAcopy' successfully unpacked and MD5 sums checked