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BioC 3.5: BUILD BIN report for ChAMP on veracruz2

This page was generated on 2017-09-08 13:50:47 -0400 (Fri, 08 Sep 2017).

Package 198/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChAMP 2.8.9
Yuan Tian
Snapshot Date: 2017-09-07 17:18:01 -0400 (Thu, 07 Sep 2017)
URL: https://git.bioconductor.org/packages/ChAMP
Last Commit: 1ebb5f2
Last Changed Date: 2017-08-08 11:28:21 -0400 (Tue, 08 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: ChAMP
Version: 2.8.9
Command: rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChAMP_2.8.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChAMP.buildbin-libdir
StartedAt: 2017-09-08 10:13:14 -0400 (Fri, 08 Sep 2017)
EndedAt: 2017-09-08 10:13:51 -0400 (Fri, 08 Sep 2017)
EllapsedTime: 36.9 seconds
RetCode: 0
Status:  OK 
PackageFile: ChAMP_2.8.9.tgz
PackageFileSize: 7.437 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChAMP_2.8.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChAMP.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChAMP.buildbin-libdir ChAMP_2.8.9.tar.gz'
>>>>>>> 

* installing *source* package ‘ChAMP’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘igraph::edges’ by ‘graph::edges’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::intersection’ by ‘graph::intersection’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::degree’ by ‘graph::degree’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::union’ by ‘graph::union’ when loading ‘FEM’
Warning: replacing previous import ‘limma::plotMA’ by ‘BiocGenerics::plotMA’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::colSums’ by ‘BiocGenerics::colSums’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::colMeans’ by ‘BiocGenerics::colMeans’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::rowMeans’ by ‘BiocGenerics::rowMeans’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::rowSums’ by ‘BiocGenerics::rowSums’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::which’ by ‘BiocGenerics::which’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::normalize’ by ‘BiocGenerics::normalize’ when loading ‘FEM’
Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP'
Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP'
Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP'
Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘igraph::edges’ by ‘graph::edges’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::intersection’ by ‘graph::intersection’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::degree’ by ‘graph::degree’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::union’ by ‘graph::union’ when loading ‘FEM’
Warning: replacing previous import ‘limma::plotMA’ by ‘BiocGenerics::plotMA’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::colSums’ by ‘BiocGenerics::colSums’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::colMeans’ by ‘BiocGenerics::colMeans’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::rowMeans’ by ‘BiocGenerics::rowMeans’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::rowSums’ by ‘BiocGenerics::rowSums’ when loading ‘FEM’
Warning: replacing previous import ‘Matrix::which’ by ‘BiocGenerics::which’ when loading ‘FEM’
Warning: replacing previous import ‘igraph::normalize’ by ‘BiocGenerics::normalize’ when loading ‘FEM’
Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP'
Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP'
Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP'
Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP'
* DONE (ChAMP)