BioC 3.5: CHECK report for BridgeDbR on tokay2

Package: BridgeDbR

Version: 1.10.2

Command: rm -rf BridgeDbR.buildbin-libdir BridgeDbR.Rcheck && mkdir BridgeDbR.buildbin-libdir BridgeDbR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BridgeDbR.buildbin-libdir BridgeDbR_1.10.2.tar.gz >BridgeDbR.Rcheck\00install.out 2>&1 && cp BridgeDbR.Rcheck\00install.out BridgeDbR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=BridgeDbR.buildbin-libdir --install="check:BridgeDbR-install.out" --force-multiarch --no-vignettes --timings BridgeDbR_1.10.2.tar.gz

StartedAt: 2017-10-17 22:26:47 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 22:28:09 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 82.1 seconds

RetCode: 0

Status:  OK

CheckDir: BridgeDbR.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf BridgeDbR.buildbin-libdir BridgeDbR.Rcheck && mkdir BridgeDbR.buildbin-libdir BridgeDbR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BridgeDbR.buildbin-libdir BridgeDbR_1.10.2.tar.gz >BridgeDbR.Rcheck\00install.out 2>&1 && cp BridgeDbR.Rcheck\00install.out BridgeDbR-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=BridgeDbR.buildbin-libdir --install="check:BridgeDbR-install.out" --force-multiarch --no-vignettes --timings BridgeDbR_1.10.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/BridgeDbR.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BridgeDbR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BridgeDbR' version '1.10.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BridgeDbR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
loadDatabase 1.75   0.42    9.85
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
loadDatabase 3.92   0.52    5.24
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'BridgeDbR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BridgeDbR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BridgeDbR' as BridgeDbR_1.10.2.zip
* DONE (BridgeDbR)

name	user	system	elapsed
fullNameExists	0.00	0.00	0.01
getBridgeNames	0.11	0.00	0.57
getDataSource	0	0	0
getDatabase	0.12	0.14	2.50
getFullName	0.03	0.00	0.03
getMatchingSources	0.02	0.00	0.10
getOrganismCode	0	0	0
getSystemCode	0	0	0
loadDatabase	1.75	0.42	9.85
map	0.21	0.14	2.32
registerDataSource	0	0	0
systemCodeExists	0	0	0

name	user	system	elapsed
fullNameExists	0	0	0
getBridgeNames	0.14	0.02	0.59
getDataSource	0	0	0
getDatabase	0.14	0.23	2.45
getFullName	0.04	0.00	0.05
getMatchingSources	0.00	0.00	0.03
getOrganismCode	0	0	0
getSystemCode	0	0	0
loadDatabase	3.92	0.52	5.24
map	0.53	0.11	2.53
registerDataSource	0	0	0
systemCodeExists	0	0	0