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BioC 3.5: BUILD report for BSgenome on malbec2

This page was generated on 2017-10-18 14:12:47 -0400 (Wed, 18 Oct 2017).

Package 154/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.44.2
H. Pagès
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/BSgenome
Branch: RELEASE_3_5
Last Commit: 105b005
Last Changed Date: 2017-09-22 03:29:53 -0400 (Fri, 22 Sep 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ OK ] WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BSgenome
Version: 1.44.2
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2017-10-17 18:22:32 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:23:49 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 77.6 seconds
RetCode: 0
Status:  OK 
PackageFile: BSgenome_1.44.2.tar.gz
PackageFileSize: 5.783 MiB

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
* building ‘BSgenome_1.44.2.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh’