Rhtslib 1.8.0
Bioconductor Package Maintainer
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/Rhtslib | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf Rhtslib.buildbin-libdir && mkdir Rhtslib.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/Rhtslib_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhtslib.buildbin-libdir --merge-multiarch Rhtslib_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL Rhtslib_1.8.0.zip && rm Rhtslib_1.8.0.tar.gz Rhtslib_1.8.0.zip
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install for i386
* installing *source* package 'Rhtslib' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp "winlib/i386/libhts.a" "C:/Users/biocbuild/bbs-3.5-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/lib/i386"/libhts.a
cp ./htslib/htslib/bgzf.h ./htslib/htslib/faidx.h ./htslib/htslib/hfile.h ./htslib/htslib/hts.h ./htslib/htslib/hts_defs.h ./htslib/htslib/kfunc.h ./htslib/htslib/khash.h ./htslib/htslib/khash_str2int.h ./htslib/htslib/klist.h ./htslib/htslib/knetfile.h ./htslib/htslib/kseq.h ./htslib/htslib/ksort.h ./htslib/htslib/kstring.h ./htslib/htslib/regidx.h ./htslib/htslib/sam.h ./htslib/htslib/synced_bcf_reader.h ./htslib/htslib/tbx.h ./htslib/htslib/vcf.h ./htslib/htslib/vcf_sweep.h ./htslib/htslib/vcfutils.h ""C:/Users/biocbuild/bbs-3.5-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/include""
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/zlibbioc/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rhtslib.c -o Rhtslib.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Rhtslib.dll tmp.def Rhtslib.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Rhtslib' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp "winlib/x64/libhts.a" "C:/Users/biocbuild/bbs-3.5-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/lib/x64"/libhts.a
cp ./htslib/htslib/bgzf.h ./htslib/htslib/faidx.h ./htslib/htslib/hfile.h ./htslib/htslib/hts.h ./htslib/htslib/hts_defs.h ./htslib/htslib/kfunc.h ./htslib/htslib/khash.h ./htslib/htslib/khash_str2int.h ./htslib/htslib/klist.h ./htslib/htslib/knetfile.h ./htslib/htslib/kseq.h ./htslib/htslib/ksort.h ./htslib/htslib/kstring.h ./htslib/htslib/regidx.h ./htslib/htslib/sam.h ./htslib/htslib/synced_bcf_reader.h ./htslib/htslib/tbx.h ./htslib/htslib/vcf.h ./htslib/htslib/vcf_sweep.h ./htslib/htslib/vcfutils.h ""C:/Users/biocbuild/bbs-3.5-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/include""
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/zlibbioc/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rhtslib.c -o Rhtslib.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Rhtslib.dll tmp.def Rhtslib.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhtslib' as Rhtslib_1.8.0.zip
* DONE (Rhtslib)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'Rhtslib' successfully unpacked and MD5 sums checked