Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: BUILD report for MeSHSim on tokay2

This page was generated on 2017-08-16 13:24:07 -0400 (Wed, 16 Aug 2017).

Package 783/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MeSHSim 1.8.0
Jing ZHou
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/MeSHSim
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded [ ERROR ] skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: MeSHSim
Version: 1.8.0
Command: chmod a+r MeSHSim -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MeSHSim
StartedAt: 2017-08-15 20:36:15 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 20:36:30 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 15.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MeSHSim -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MeSHSim
###
##############################################################################
##############################################################################


* checking for file 'MeSHSim/DESCRIPTION' ... OK
* preparing 'MeSHSim':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: bitops
Warning: Package 'MeSHSim' is deprecated and will be removed from
  Bioconductor version 3.6

Error: processing vignette 'MeSHSim.Rnw' failed with diagnostics:
 chunk 15 (label = main14) 
Error : 1: Space required after the Public Identifier
2: SystemLiteral " or ' expected
3: SYSTEM or PUBLIC, the URI is missing

Execution halted