ASpli 1.2.3
Estefania Mancini , Javier Iserte
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/ASpli | | Last Changed Rev: 131897 / Revision: 131943 | | Last Changed Date: 2017-08-11 09:12:05 -0400 (Fri, 11 Aug 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf ASpli.buildbin-libdir ASpli.Rcheck && mkdir ASpli.buildbin-libdir ASpli.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASpli.buildbin-libdir ASpli_1.2.3.tar.gz >ASpli.Rcheck\00install.out 2>&1 && cp ASpli.Rcheck\00install.out ASpli-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ASpli.buildbin-libdir --install="check:ASpli-install.out" --force-multiarch --no-vignettes --timings ASpli_1.2.3.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/ASpli.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '1.2.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
DUreport_DEXSeq 104.50 3.73 108.38
ASpli-package 79.10 6.24 85.32
AsDiscover-methods 70.03 3.71 73.75
plotTopTags 53.45 1.23 54.69
DUreport 51.31 2.88 54.18
acc_AS 48.62 1.82 50.44
readCounts 47.58 0.78 48.36
acc_counts 41.45 1.92 43.38
acc_DU 41.82 1.26 43.08
loadBAM 10.39 0.28 10.67
binGenome 7.88 0.06 7.94
acc_features 7.72 0.02 7.73
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
DUreport_DEXSeq 107.66 3.48 111.17
ASpli-package 82.81 6.07 88.87
AsDiscover-methods 75.77 3.86 79.64
acc_AS 64.59 2.43 67.17
plotTopTags 60.00 1.81 61.81
readCounts 57.14 1.93 59.08
DUreport 51.63 3.23 54.86
acc_DU 50.37 1.65 52.03
acc_counts 45.79 2.35 48.13
loadBAM 11.47 0.56 12.03
acc_features 9.06 0.03 9.09
binGenome 8.62 0.06 8.69
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
install for i386
* installing *source* package 'ASpli' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_1.2.3.zip
* DONE (ASpli)