affydata 1.21.0
Harris Jaffee
| Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/affydata | | Last Changed Rev: 3763 / Revision: 3781 | | Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf affydata.buildbin-libdir affydata.Rcheck && mkdir affydata.buildbin-libdir affydata.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=affydata.buildbin-libdir affydata_1.21.0.tar.gz >affydata.Rcheck\00install.out 2>&1 && cp affydata.Rcheck\00install.out affydata-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=affydata.buildbin-libdir --install="check:affydata-install.out" --force-multiarch --no-vignettes --timings affydata_1.21.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/affydata.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affydata/DESCRIPTION' ... OK
* this is package 'affydata' version '1.21.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'affydata' can be installed ... OK
* checking installed package size ... NOTE
installed size is 23.4Mb
sub-directories of 1Mb or more:
celfiles 16.2Mb
data 4.4Mb
extracelfiles 2.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... WARNING
Error: .onLoad failed in loadNamespace() for 'affydata', details:
call: show(data(package = pkgname)$results)
error: could not find function "data"
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... WARNING
Error: .onLoad failed in loadNamespace() for 'affydata', details:
call: show(data(package = pkgname)$results)
error: could not find function "data"
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'affy'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Error: .onLoad failed in loadNamespace() for 'affydata', details:
call: show(data(package = pkgname)$results)
error: could not find function "data"
Execution halted
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
Dilution.rda 4.4Mb 2.4Mb xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' import not declared from: 'Biobase'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 4 NOTEs
See
'D:/biocbld/bbs-3.4-data-experiment/meat/affydata.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'affydata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Package
[1,] "affydata"
LibPath
[1,] "D:/biocbld/bbs-3.4-data-experiment/meat/affydata.buildbin-libdir"
Item Title
[1,] "Dilution" "AffyBatch instance Dilution"
install for x64
* installing *source* package 'affydata' ...
** testing if installed package can be loaded
Package
[1,] "affydata"
LibPath
[1,] "D:/biocbld/bbs-3.4-data-experiment/meat/affydata.buildbin-libdir"
Item Title
[1,] "Dilution" "AffyBatch instance Dilution"
* MD5 sums
packaged installation of 'affydata' as affydata_1.21.0.zip
* DONE (affydata)