BioC experimental data: CHECK report for ListerEtAlBSseq on moscato1

Package: ListerEtAlBSseq

Version: 1.5.2

Command: rm -rf ListerEtAlBSseq.buildbin-libdir ListerEtAlBSseq.Rcheck && mkdir ListerEtAlBSseq.buildbin-libdir ListerEtAlBSseq.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ListerEtAlBSseq.buildbin-libdir ListerEtAlBSseq_1.5.2.tar.gz >ListerEtAlBSseq.Rcheck\00install.out 2>&1 && cp ListerEtAlBSseq.Rcheck\00install.out ListerEtAlBSseq-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ListerEtAlBSseq.buildbin-libdir --install="check:ListerEtAlBSseq-install.out" --force-multiarch --no-vignettes --timings ListerEtAlBSseq_1.5.2.tar.gz

StartedAt: 2016-05-28 15:15:37 -0700 (Sat, 28 May 2016)

EndedAt: 2016-05-28 15:28:15 -0700 (Sat, 28 May 2016)

EllapsedTime: 757.6 seconds

RetCode: 0

Status:  OK

CheckDir: ListerEtAlBSseq.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf ListerEtAlBSseq.buildbin-libdir ListerEtAlBSseq.Rcheck && mkdir ListerEtAlBSseq.buildbin-libdir ListerEtAlBSseq.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ListerEtAlBSseq.buildbin-libdir ListerEtAlBSseq_1.5.2.tar.gz >ListerEtAlBSseq.Rcheck\00install.out 2>&1 && cp ListerEtAlBSseq.Rcheck\00install.out ListerEtAlBSseq-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ListerEtAlBSseq.buildbin-libdir --install="check:ListerEtAlBSseq-install.out" --force-multiarch --no-vignettes --timings ListerEtAlBSseq_1.5.2.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/ListerEtAlBSseq.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ListerEtAlBSseq/DESCRIPTION' ... OK
* this is package 'ListerEtAlBSseq' version '1.5.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ListerEtAlBSseq' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 659.0Mb
  sub-directories of 1Mb or more:
    data       2.9Mb
    extdata  656.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
H1.WGBS 0.27   0.02    12.9
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/ListerEtAlBSseq.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'ListerEtAlBSseq' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ListerEtAlBSseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ListerEtAlBSseq' as ListerEtAlBSseq_1.5.2.zip
* DONE (ListerEtAlBSseq)

name	user	system	elapsed
H1.WGBS	0.27	0.02	12.90
IMR90.WGBS	0.23	0.00	0.23

name	user	system	elapsed
H1.WGBS	0.28	0.00	4.16
IMR90.WGBS	0.27	0.03	1.23