BioC experimental data: CHECK report for lungExpression on moscato1

Package: lungExpression

Version: 0.11.0

Command: rm -rf lungExpression.buildbin-libdir lungExpression.Rcheck && mkdir lungExpression.buildbin-libdir lungExpression.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=lungExpression.buildbin-libdir lungExpression_0.11.0.tar.gz >lungExpression.Rcheck\00install.out 2>&1 && cp lungExpression.Rcheck\00install.out lungExpression-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=lungExpression.buildbin-libdir --install="check:lungExpression-install.out" --force-multiarch --no-vignettes --timings lungExpression_0.11.0.tar.gz

StartedAt: 2016-05-28 15:20:44 -0700 (Sat, 28 May 2016)

EndedAt: 2016-05-28 15:22:18 -0700 (Sat, 28 May 2016)

EllapsedTime: 93.7 seconds

RetCode: 0

Status:  OK

CheckDir: lungExpression.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf lungExpression.buildbin-libdir lungExpression.Rcheck && mkdir lungExpression.buildbin-libdir lungExpression.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=lungExpression.buildbin-libdir lungExpression_0.11.0.tar.gz >lungExpression.Rcheck\00install.out 2>&1 && cp lungExpression.Rcheck\00install.out lungExpression-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=lungExpression.buildbin-libdir --install="check:lungExpression-install.out" --force-multiarch --no-vignettes --timings lungExpression_0.11.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/lungExpression.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lungExpression/DESCRIPTION' ... OK
* this is package 'lungExpression' version '0.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lungExpression' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: harvard.Rd:10-11: Dropping empty section \format
prepare_Rd: harvard.Rd:17-18: Dropping empty section \source
prepare_Rd: michigan.Rd:10-11: Dropping empty section \format
prepare_Rd: michigan.Rd:17-18: Dropping empty section \source
prepare_Rd: stanford.Rd:9-10: Dropping empty section \format
prepare_Rd: stanford.Rd:16-18: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/lungExpression.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'lungExpression' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'lungExpression' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lungExpression' as lungExpression_0.11.0.zip
* DONE (lungExpression)

name	user	system	elapsed
harvard	0.06	0.00	0.06
michigan	0.05	0.00	0.04
stanford	0.01	0.00	0.02

name	user	system	elapsed
harvard	0.13	0.00	0.12
michigan	0.01	0.01	0.04
stanford	0.02	0.02	0.03