encoDnaseI 0.12.0
VJ Carey
| Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/encoDnaseI | | Last Changed Rev: 3958 / Revision: 4141 | | Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data encoDnaseI
###
##############################################################################
##############################################################################
* checking for file ‘encoDnaseI/DESCRIPTION’ ... OK
* preparing ‘encoDnaseI’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: lattice
Loading required package: GGtools
Loading required package: GGBase
Loading required package: snpStats
Loading required package: survival
Loading required package: Matrix
Warning: replacing previous import ‘IRanges::which’ by ‘Matrix::which’ when loading ‘GGBase’
Loading required package: data.table
Loading required package: Homo.sapiens
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:data.table’:
first, second
The following objects are masked from ‘package:Matrix’:
colMeans, colSums, expand, rowMeans, rowSums
The following objects are masked from ‘package:base’:
colMeans, colSums, expand.grid, rowMeans, rowSums
Attaching package: ‘IRanges’
The following object is masked from ‘package:data.table’:
shift
Loading required package: OrganismDbi
Loading required package: GenomicFeatures
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GO.db
Loading required package: org.Hs.eg.db
Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
Attaching package: 'GGtools'
The following object is masked from 'package:stats':
getCall
Loading required package: illuminaHumanv1.db
To get a tailored smlSet, use getSS("GGdata", [chrvec])
available chromosomes are named 1, 10, ..., X, Y
Error: processing vignette 'dnaseUse.Rnw' failed with diagnostics:
chunk 5 (label = dogg)
Error in library(SNPlocs.Hsapiens.dbSNP.20090506) :
there is no package called 'SNPlocs.Hsapiens.dbSNP.20090506'
Execution halted