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BioC 3.4: CHECK report for ropls on moscato1

This page was generated on 2016-09-21 03:47:20 -0700 (Wed, 21 Sep 2016).

Package 1045/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ropls 1.5.18
Etienne A. Thevenot
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ropls
Last Changed Rev: 121149 / Revision: 121152
Last Changed Date: 2016-09-19 14:11:03 -0700 (Mon, 19 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK YES, new version is higher than in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: ropls
Version: 1.5.18
Command: rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.5.18.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.5.18.tar.gz
StartedAt: 2016-09-20 15:47:33 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 15:49:26 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 113.3 seconds
RetCode: 0
Status:  OK  
CheckDir: ropls.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ropls.buildbin-libdir ropls.Rcheck && mkdir ropls.buildbin-libdir ropls.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ropls.buildbin-libdir ropls_1.5.18.tar.gz >ropls.Rcheck\00install.out 2>&1 && cp ropls.Rcheck\00install.out ropls-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ropls.buildbin-libdir --install="check:ropls-install.out" --force-multiarch --no-vignettes --timings ropls_1.5.18.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/ropls.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ropls/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ropls' version '1.5.18'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ropls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ropls.Rcheck/00install.out:


install for i386

* installing *source* package 'ropls' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ropls'
Creating a generic function for 'plot' from package 'graphics' in package 'ropls'
Creating a generic function for 'fitted' from package 'stats' in package 'ropls'
Creating a generic function for 'coef' from package 'stats' in package 'ropls'
Creating a generic function for 'residuals' from package 'stats' in package 'ropls'
Creating a generic function for 'predict' from package 'stats' in package 'ropls'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ropls' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ropls' as ropls_1.5.18.zip
* DONE (ropls)

ropls.Rcheck/examples_i386/ropls-Ex.timings:

nameusersystemelapsed
checkW4M0.20.00.2
coef1.020.001.01
fitted0.890.030.92
fromW4M0.150.000.16
getLoadingMN0.960.020.98
getPcaVarVn0.120.010.14
getScoreMN0.810.020.83
getSubsetVi0.090.010.11
getSummaryDF0.800.020.81
getVipVn0.760.020.78
getWeightMN0.770.030.80
opls-class2.620.062.68
opls2.480.052.56
plot1.050.181.46
predict0.090.020.15
print0.780.030.81
residuals0.580.000.57
ropls-package1.790.022.16
show0.780.000.78
strF0.020.000.02
tested0.070.020.09
toW4M0.220.000.22

ropls.Rcheck/examples_x64/ropls-Ex.timings:

nameusersystemelapsed
checkW4M0.20.00.2
coef1.030.011.04
fitted0.920.000.92
fromW4M0.140.000.14
getLoadingMN0.910.000.94
getPcaVarVn0.140.000.14
getScoreMN0.890.020.91
getSubsetVi0.090.010.10
getSummaryDF0.890.021.08
getVipVn0.950.010.97
getWeightMN0.910.020.92
opls-class2.930.062.99
opls2.700.083.42
plot0.970.332.37
predict0.090.010.14
print0.880.020.89
residuals0.580.030.61
ropls-package1.980.082.20
show0.850.010.87
strF0.020.000.01
tested0.070.020.09
toW4M0.220.000.22