##############################################################################
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###
### Running command:
###
### chmod a+r networkBMA -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data networkBMA
###
##############################################################################
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* checking for file 'networkBMA/DESCRIPTION' ... OK
* preparing 'networkBMA':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
Warning: running command '"C:/Users/biocbuild/bbs-3.4-bioc/R/bin/x64/Rcmd.exe" INSTALL -l "C:\Users\biocbuild\bbs-3.4-bioc\tmpdir\RtmpwhdmV3\Rinst16845a665fb" --no-multiarch "C:/Users/biocbuild/bbs-3.4-bioc/tmpdir/RtmpwhdmV3/Rbuild168435a72990/networkBMA"' had status 1
-----------------------------------
* installing *source* package 'networkBMA' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DWIN=1 -I./include -I. -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/BH/include" -I"C:/local323/include" -fopenmp -std=c++0x -O2 -Wall -mtune=core2 -c MurmurHash3.cpp -o MurmurHash3.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DWIN=1 -I./include -I. -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/BH/include" -I"C:/local323/include" -fopenmp -std=c++0x -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DWIN=1 -I./include -I. -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/BH/include" -I"C:/local323/include" -fopenmp -std=c++0x -O2 -Wall -mtune=core2 -c ScanBMA_full.cpp -o ScanBMA_full.o
ScanBMA_full.cpp: In function 'const List ScanBMA_BIC(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double)':
ScanBMA_full.cpp:132:45: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp: In function 'const List BMA_Diff_BIC(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector, Rcpp::IntegerVector, double, double)':
ScanBMA_full.cpp:323:43: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp: In function 'const List ScanBMA_g(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double, double)':
ScanBMA_full.cpp:416:45: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp: In function 'const List BMA_Diff_g(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector, Rcpp::IntegerVector, double, double)':
ScanBMA_full.cpp:609:43: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DWIN=1 -I./include -I. -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/BH/include" -I"C:/local323/include" -fopenmp -std=c++0x -O2 -Wall -mtune=core2 -c fastBMAR.cpp -o fastBMAR.o
In file included from fastBMAR.cpp:3:0:
fastBMA.hpp: In member function 'unsigned char BitArray::getBit(std::size_t)':
fastBMA.hpp:128:30: warning: suggest parentheses around '-' inside '>>' [-Wparentheses]
return (array[index/8] >> 7-(index & 0x7)) & 0x1;
^
fastBMA.hpp: In member function 'unsigned char BitArray::setBit(std::size_t)':
fastBMA.hpp:131:44: warning: suggest parentheses around '-' inside '<<' [-Wparentheses]
array[index/8] = array[index/8] | 1 << 7-(index & 0x7);
^
fastBMA.hpp: In member function 'uint_fast32_t std::hash<CompactModelIndices<long long unsigned int> >::operator()(const CompactModelIndices<long long unsigned int>&) const':
fastBMA.hpp:726:18: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
return(hash & 0xFFFFFFF0 | size);
^
fastBMA.hpp:728:24: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
return(k.hashValue & 0xFFFFFFF0 | size);
^
fastBMA.hpp: In member function 'uint_fast32_t std::hash<ModelIndicesHash<unsigned int> >::operator()(const ModelIndicesHash<unsigned int>&) const':
fastBMA.hpp:767:24: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
return(k.hashValue & 0xFFFFFFF0 | size);
^
fastBMA.hpp: In member function 'float EdgeList::dijkstra_limit(int, int, float, float**, float)':
fastBMA.hpp:1112:6: warning: variable 'path_found' set but not used [-Wunused-but-set-variable]
int path_found=0;
^
fastBMA.hpp: In member function 'float* EdgeList::cutter_prune_edges(float, float)':
fastBMA.hpp:1231:31: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
if (((*((unsigned int*)&val) & 2147483648u)) or (val >= upper_threshold) )adjMatrix[i] = 2.0f;
^
fastBMAR.cpp: In function 'const List fastBMA_g(Rcpp::NumericMatrix, int, Rcpp::NumericMatrix, double, int, double, Rcpp::CharacterVector, int, int, int, int, int, bool, bool, bool, double, double, double, double)':
fastBMAR.cpp:33:7: warning: unused variable 'colNum' [-Wunused-variable]
int colNum = x.ncol();
^
In file included from fastBMAR.cpp:3:0:
fastBMA.hpp: In instantiation of 'uint64_t PackedBitArray<T>::get(uint8_t, std::size_t) [with T = long long unsigned int; uint64_t = long long unsigned int; uint8_t = unsigned char; std::size_t = long long unsigned int]':
fastBMA.hpp:724:50: required from here
fastBMA.hpp:191:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=startIndex+1;i<endIndex;i++){
^
fastBMA.hpp:192:39: warning: suggest parentheses around '-' inside '<<' [-Wparentheses]
retValue |= ((uint64_t) array[i]) << elementSize-bitsRead-tBits;
^
In file included from fastBMAR.cpp:4:0:
bmaNoMPI.hpp: In instantiation of 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]':
fastBMAR.cpp:151:2: required from here
bmaNoMPI.hpp:131:2: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int k=0;k<evalSubset.size();k++){
^
bmaNoMPI.hpp:151:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int j=0;j<thChildren[th].size();j++){
^
In file included from fastBMAR.cpp:3:0:
fastBMA.hpp: In instantiation of 'void initRegressParms(T*, T*, T**, int, int, int, int, int&, int, bool) [with T = double]':
bmaNoMPI.hpp:114:87: required from 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]'
fastBMAR.cpp:151:2: required from here
fastBMA.hpp:1723:7: warning: value computed is not used [-Wunused-value]
*dest++;
^
fastBMA.hpp: In instantiation of 'int fastScanBMA_g(T*, T*, T, T, int, T*, bool, double*, int*, int, int, int, double, double, int, int, float) [with T = double]':
fastBMA.hpp:1779:159: required from 'int findRegulators(T, int, int, float, float, int, int, bool, int, T**, T**, int*, double*, T*, T*, int, int, int, int, int, int, float) [with T = double]'
bmaNoMPI.hpp:133:225: required from 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]'
fastBMAR.cpp:151:2: required from here
fastBMA.hpp:1417:10: warning: unused variable 'g0' [-Wunused-variable]
double g0=g;
^
fastBMA.hpp:1331:18: warning: unused variable 'start_time' [-Wunused-variable]
struct timespec start_time;
^
fastBMA.hpp:1332:18: warning: unused variable 'end_time' [-Wunused-variable]
struct timespec end_time;
^
fastBMA.hpp:1333:18: warning: unused variable 'regress_time' [-Wunused-variable]
struct timespec regress_time;
^
fastBMA.hpp:1412:6: warning: unused variable 'nIterations' [-Wunused-variable]
int nIterations=0;
^
fastBMA.hpp:1413:7: warning: unused variable 'doneOptimizing' [-Wunused-variable]
bool doneOptimizing=0;
^
fastBMA.hpp: In instantiation of 'T chooseBestModels(double, T*, int, int, int, int*, T*, T, T, double*, int*, int*, double*, double, float) [with T = double]':
fastBMA.hpp:1425:117: required from 'int fastScanBMA_g(T*, T*, T, T, int, T*, bool, double*, int*, int, int, int, double, double, int, int, float) [with T = double]'
fastBMA.hpp:1779:159: required from 'int findRegulators(T, int, int, float, float, int, int, bool, int, T**, T**, int*, double*, T*, T*, int, int, int, int, int, int, float) [with T = double]'
bmaNoMPI.hpp:133:225: required from 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]'
fastBMAR.cpp:151:2: required from here
fastBMA.hpp:1470:15: warning: unused variable 'startHash' [-Wunused-variable]
timespec startHash,endHash;
^
fastBMA.hpp:1470:25: warning: unused variable 'endHash' [-Wunused-variable]
timespec startHash,endHash;
^
fastBMA.hpp:1437:9: warning: unused variable 'timespent' [-Wunused-variable]
float timespent=0;
^
fastBMA.hpp:1676:5: warning: unused variable 'rvalue' [-Wunused-variable]
T rvalue=0;
^
fastBMA.hpp: In instantiation of 'CompactModelIndices<T>::CompactModelIndices() [with T = long long unsigned int]':
fastBMA.hpp:786:63: required from 'ModelSet<T>::ModelSet(ModelIndices, T, T, double) [with T = double]'
fastBMA.hpp:1443:3: required from 'T chooseBestModels(double, T*, int, int, int, int*, T*, T, T, double*, int*, int*, double*, double, float) [with T = double]'
fastBMA.hpp:1425:117: required from 'int fastScanBMA_g(T*, T*, T, T, int, T*, bool, double*, int*, int, int, int, double, double, int, int, float) [with T = double]'
fastBMA.hpp:1779:159: required from 'int findRegulators(T, int, int, float, float, int, int, bool, int, T**, T**, int*, double*, T*, T*, int, int, int, int, int, int, float) [with T = double]'
bmaNoMPI.hpp:133:225: required from 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]'
fastBMAR.cpp:151:2: required from here
fastBMA.hpp:630:12: warning: unused variable 'modelBits' [-Wunused-variable]
uint8_t modelBits=gModelBits;
^
fastBMA.hpp:631:12: warning: unused variable 'nModels' [-Wunused-variable]
uint8_t nModels=0;
^
fastBMA.hpp: In instantiation of 'CompactModelIndices<T>::CompactModelIndices(ModelIndices&) [with T = long long unsigned int]':
fastBMA.hpp:787:16: required from 'ModelSet<T>::ModelSet(ModelIndices, T, T, double) [with T = double]'
fastBMA.hpp:1443:3: required from 'T chooseBestModels(double, T*, int, int, int, int*, T*, T, T, double*, int*, int*, double*, double, float) [with T = double]'
fastBMA.hpp:1425:117: required from 'int fastScanBMA_g(T*, T*, T, T, int, T*, bool, double*, int*, int, int, int, double, double, int, int, float) [with T = double]'
fastBMA.hpp:1779:159: required from 'int findRegulators(T, int, int, float, float, int, int, bool, int, T**, T**, int*, double*, T*, T*, int, int, int, int, int, int, float) [with T = double]'
bmaNoMPI.hpp:133:225: required from 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]'
fastBMAR.cpp:151:2: required from here
fastBMA.hpp:626:19: warning: 'CompactModelIndices<long long unsigned int>::nModels' will be initialized after [-Wreorder]
uint8_t nModels=0; //never more than 256 variables in a model
^
fastBMA.hpp:624:17: warning: 'uint_fast32_t CompactModelIndices<long long unsigned int>::hashValue' [-Wreorder]
uint_fast32_t hashValue;
^
fastBMA.hpp:667:3: warning: when initialized here [-Wreorder]
CompactModelIndices( ModelIndices &mind): nModels(mind.nModels),hashValue(mind.hashValue){
^
fastBMA.hpp: In instantiation of 'void PackedBitArray<T>::set(uint8_t, std::size_t, uint64_t) [with T = long long unsigned int; uint8_t = unsigned char; std::size_t = long long unsigned int; uint64_t = long long unsigned int]':
fastBMA.hpp:673:6: required from 'CompactModelIndices<T>::CompactModelIndices(ModelIndices&) [with T = long long unsigned int]'
fastBMA.hpp:787:16: required from 'ModelSet<T>::ModelSet(ModelIndices, T, T, double) [with T = double]'
fastBMA.hpp:1443:3: required from 'T chooseBestModels(double, T*, int, int, int, int*, T*, T, T, double*, int*, int*, double*, double, float) [with T = double]'
fastBMA.hpp:1425:117: required from 'int fastScanBMA_g(T*, T*, T, T, int, T*, bool, double*, int*, int, int, int, double, double, int, int, float) [with T = double]'
fastBMA.hpp:1779:159: required from 'int findRegulators(T, int, int, float, float, int, int, bool, int, T**, T**, int*, double*, T*, T*, int, int, int, int, int, int, float) [with T = double]'
bmaNoMPI.hpp:133:225: required from 'void findEdges(BMARetStruct*, T**, T**, std::vector<std::basic_string<char> >&, int, int, int, bool, bool, bool, int, int, int, int, float, float, float, float, float, float, float, int, int) [with T = double]'
fastBMAR.cpp:151:2: required from here
fastBMA.hpp:217:48: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
array[startIndex]=array[startIndex] & ˜mask | ((T) value << (tBits- bitOffset -elementSize));
^
fastBMA.hpp:230:61: warning: suggest parentheses around '-' inside '>>' [-Wparentheses]
array[startIndex]=(array[startIndex] & mask) | (T)(value >> elementSize - (tBits-bitOffset));
^
fastBMA.hpp:233:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=startIndex+1;i<endIndex;i++){
^
fastBMA.hpp:234:25: warning: suggest parentheses around '-' inside '>>' [-Wparentheses]
array[i]=(T) (value >> elementSize-bitsWritten-tBits);
^
fastBMA.hpp:240:15: warning: suggest parentheses around '-' inside '>>' [-Wparentheses]
mask= ones >> elementSize-bitsWritten;
^
fastBMA.hpp:241:43: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
array[endIndex]=array[endIndex] & mask | (T) (value << (tBits-(elementSize-bitsWritten)));
^
fastBMA.hpp: In function 'bool isTimedOut(timespec*, float)':
fastBMA.hpp:2402:36: warning: 'now.timespec::tv_sec' is used uninitialized in this function [-Wuninitialized]
int64_t sec = end_time->tv_sec - start_time->tv_sec;
^
fastBMA.hpp:2430:11: note: 'now' was declared here
timespec now;
^
fastBMA.hpp:2404:27: warning: 'now.timespec::tv_nsec' is used uninitialized in this function [-Wuninitialized]
if (end_time->tv_nsec >= start_time->tv_nsec) {
^
fastBMA.hpp:2430:11: note: 'now' was declared here
timespec now;
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o networkBMA.dll tmp.def MurmurHash3.o RcppExports.o ScanBMA_full.o fastBMAR.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lR
fastBMAR.o:fastBMAR.cpp:(.text+0x4dc): undefined reference to `cblas_sgemm'
fastBMAR.o:fastBMAR.cpp:(.text+0x553): undefined reference to `cblas_dgemm'
fastBMAR.o:fastBMAR.cpp:(.text+0x5bc): undefined reference to `cblas_sgemm'
fastBMAR.o:fastBMAR.cpp:(.text+0x633): undefined reference to `cblas_dgemm'
fastBMAR.o:fastBMAR.cpp:(.text+0x6a0): undefined reference to `cblas_dgemv'
fastBMAR.o:fastBMAR.cpp:(.text+0x709): undefined reference to `cblas_sgemv'
fastBMAR.o:fastBMAR.cpp:(.text+0x756): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text+0x776): undefined reference to `cblas_sdot'
fastBMAR.o:fastBMAR.cpp:(.text+0x798): undefined reference to `cblas_daxpy'
fastBMAR.o:fastBMAR.cpp:(.text+0x7c8): undefined reference to `cblas_saxpy'
fastBMAR.o:fastBMAR.cpp:(.text+0x816): undefined reference to `cblas_strsv'
fastBMAR.o:fastBMAR.cpp:(.text+0x856): undefined reference to `cblas_dtrsv'
fastBMAR.o:fastBMAR.cpp:(.text+0x8cb): undefined reference to `spotrf_'
fastBMAR.o:fastBMAR.cpp:(.text+0x731): undefined reference to `slartg_'
fastBMAR.o:fastBMAR.cpp:(.text$_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i[_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i]+0xd5): undefined reference to `cblas_dtrsv'
fastBMAR.o:fastBMAR.cpp:(.text$_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i[_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i]+0xf0): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i[_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i]+0x194): undefined reference to `cblas_dtrsv'
fastBMAR.o:fastBMAR.cpp:(.text$_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i[_Z8getR2_upIdET_R12ModelIndicesPS0_iS3_S0_S3_i]+0x1af): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z10getR2_downIdET_iR12ModelIndicesPS0_S0_S3_ii[_Z10getR2_downIdET_iR12ModelIndicesPS0_S0_S3_ii]+0x1b1): undefined reference to `cblas_dtrsv'
fastBMAR.o:fastBMAR.cpp:(.text$_Z10getR2_downIdET_iR12ModelIndicesPS0_S0_S3_ii[_Z10getR2_downIdET_iR12ModelIndicesPS0_S0_S3_ii]+0x1cc): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x1df): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x208): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x25f): undefined reference to `cblas_daxpy'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x27a): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x401): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x42a): undefined reference to `cblas_ddot'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x481): undefined reference to `cblas_daxpy'
fastBMAR.o:fastBMAR.cpp:(.text$_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif[_Z14findRegulatorsIdEiT_iiffiibiPPS0_S2_PiPdS1_S1_iiiiiif]+0x49c): undefined reference to `cblas_ddot'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'networkBMA'
* removing 'C:/Users/biocbuild/bbs-3.4-bioc/tmpdir/RtmpwhdmV3/Rinst16845a665fb/networkBMA'
-----------------------------------
ERROR: package installation failed
